Posts by Path7

1) Message boards : Number crunching : Granted Credit taking forever.... (Message 63292) Posted 11 Sep 2009 by Path7 Post: Hello all, The Wu's with validate state: Workunit error - check skipped; now have credit granted. Claimed credit = Granted credit. Thanks team. I do wonder if these Wu's still have any scientific value. Path7.
2) Message boards : Number crunching : Too Many - Validate state Workunit error - check skipped (Message 63285) Posted 11 Sep 2009 by Path7 Post: Hello Team, The Wu's which were pending for a long time, now show a new Validate state: Workunit error - check skipped. And from the Workunit details page: errors – Cancelled validation – Pending I am wondering will these Wu's be validated / granted later on or else............? Have a nice day, Path7.
3) Message boards : Number crunching : Granted Credit taking forever.... (Message 63284) Posted 11 Sep 2009 by Path7 Post: Hello Gen_X_Accord, Evan's idea looks good to me. Don't think you will flood the servers; 221,150 Wu's a day = 9215 Wu's/hour = 2.56 Wu's each second How many seconds do you need to upload / report a single WU? The server has done lots of other Wu's in the meantime. About choosing between Rosetta & WCG: personally I think there is no wrong choice to make; its up to you. “Cancelled, in the error section” yes that is weird, I'll ask about that. Have a nice day, Path7.
4) Message boards : Number crunching : Task Pending!! (Message 63277) Posted 11 Sep 2009 by Path7 Post: Hello banano, The Team released some information about the pending Wu's. You can find the info at the homepage (halfway the page, right column) or all news page. Lets hope credits are granted soon. Have a nice day, Path7.
5) Questions and Answers : Windows : Granted credit is 'pending' (Message 63266) Posted 11 Sep 2009 by Path7 Post: The Team released some information about the pending Wu's. You can find the info at the homepage (halfway the page, right column) or all news page. Lets hope credits are granted soon. Path7.
6) Message boards : Number crunching : Latest WUs don't set check points. (Message 63225) Posted 9 Sep 2009 by Path7 Post: The next WU (most likely) didn't checkpoint: 1BRS.bound.mppk.min.pdb_dock_score12_ddg.xml_yfsong_14675_3545_0 ran ongoing for 2.5 hours (preference: switch between application every 1 hour has been denied) Ended by watchdog; 100 decoys. Path7.
7) Message boards : Number crunching : Latest WUs don't set check points. (Message 63224) Posted 9 Sep 2009 by Path7 Post: Something similar. This WU: 2PTC.bound.mppk.min.pdb_dock_score12_ddg.xml_yfsong_14675_3356_0 ran ongoing for nearly 2 hours (=processor time) when I switched my laptop off. Today I booted my laptop again and the WU started from 0:00. Seems to me there was no check-pointing. Path7.
8) Message boards : Number crunching : Minirosetta 1.97 (Message 63055) Posted 27 Aug 2009 by Path7 Post: Hello all, Another RAM hungry WU: 1u5p_D_194_G_ddg_predictions_82409_006_MUT.1u5p_D_194_G_.out_14656_1_0 At the first attempt it ran for about 17 minutes used more than 700 MB Ram and ended with: "waiting for memory". At the second attempt I changed the setting from "use at most 50 % RAM while in use" to 75 %. This time the WU kept on running with a peak RAM usage of 1104100 kB (some 1078 MB). Sad thing is the WU doesn't seem to proceed, stuck at 0.000 %. The graphics screen show me the WU still initializing. Running a single core AMD sempron with 1471.48 MB RAM Sorry, with my PC becoming sluggish I had to abort this WU. Path7.
9) Questions and Answers : Web site : Result plots not working? (Message 62891) Posted 11 Aug 2009 by Path7 Post: ..... But I suppose they are not mine. There are app. double number of results showed there (by the way quite few at all, I'm rookie). Or I missed something. With regards Hello macko, With some copy & paste I found your results. They look real to me. By the way these are my results. Perhaps someone with more technical or biological experience can give a better answer? Have a nice day, Path7.
10) Questions and Answers : Web site : Result plots not working? (Message 62868) Posted 10 Aug 2009 by Path7 Post: Hi "Sorry, the data requested does not exist." message when I tried to view my results. Similar result when using the link from home and from account. Login/logout tried. Old problem again? Global issue or only my account sick? With regards Hello macko, Had the same issue yesterday. Right now the results for active workunits show up when I hit Results. Have a nice day, Path7.
11) Message boards : Number crunching : Signature Error (Message 62807) Posted 6 Aug 2009 by Path7 Post: Hello all, Just saw BOINC downloading a MiniRosetta 1.91 task: 6-8-2009 22:54:46\|rosetta@home\|Sending scheduler request: To fetch work. Requesting 21 seconds of work, reporting 0 completed tasks 6-8-2009 22:55:11\|rosetta@home\|Scheduler request failed: Couldn't connect to server Not smoothly: 6-8-2009 23:06:16\|rosetta@home\|Temporarily failed download of minirosetta_1.91_windows_intelx86.exe: system connect 6-8-2009 23:06:16\|rosetta@home\|Temporarily failed download of minirosetta_database_rev31589.zip: system connect But finally: 6-8-2009 23:20:10\|rosetta@home\|Started download of minirosetta_database_rev31589.zip 6-8-2009 23:22:26\|rosetta@home\|Finished download of minirosetta_1.91_windows_intelx86.exe 6-8-2009 23:24:56\|rosetta@home\|Temporarily failed download of minirosetta_database_rev31589.zip: http error 6-8-2009 23:24:58\|rosetta@home\|Started download of minirosetta_database_rev31589.zip 6-8-2009 23:31:53\|rosetta@home\|Finished download of minirosetta_database_rev31589.zip Download O.K.!!! (date = d-m-yyyy time = UTC +2 hour) Lets hope the best for 1.91. Path7.
12) Message boards : Number crunching : Minirosetta 1.90 and 1.91 (Message 62727) Posted 2 Aug 2009 by Path7 Post: I can no longer run Rosetta as none of my 4 machines will load minirosetta-database-rev31588.zip. This all started on the 30th of July. I have been running Rosetta since 2006 and this is the first time for this problem, however, it will run using version 5-10-45 ONLY. Is there a fix for this or do I just have to run the old version ?????????????? Hello Mel, Had the same problems: 2-8-2009 19:50:27\|rosetta@home\|[error] Signature verification failed for minirosetta_database_rev31588.zip 2-8-2009 19:50:27\|rosetta@home\|[error] Checksum or signature error for minirosetta_database_rev31588.zip This is on a Vista laptop & BOINC 5.10.45. I tried often to download a new WU without success. Yet i decided to reset the project and now the download proceeded successfully. I'm not sure whether I was just lucky or the reset did the trick. Good luck, Path7.
13) Message boards : Number crunching : Minirosetta 1.82/1.88 (Message 62690) Posted 31 Jul 2009 by Path7 Post: If these jobs are not valid, then where was the command from RAH to have the system delete them? How do you tell which ones were invalid and can be aborted and which ones will run ok? I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece. Hello Greg, The error reports above are all about: lrX_XX_seq_score_...... Wu's. The lrX_XX_mmbend_rlbd_ ..... Wu's are not mentioned in the error reports above. Be aware: it is sometimes difficult to download new Wu's. Good luck, Path7.
14) Message boards : Number crunching : Minirosetta 1.82/1.88 (Message 62602) Posted 29 Jul 2009 by Path7 Post: My first minirosetta 1.88 WU ended with an: incorrect function: lr8_B_seq_score12_ss5.0_rlbd_2uzr_IGNORE_THE_REST_DECOY_14598_374_0 ERROR: Option matching -detect_disulf not found in command line top-level context Edit: The same error on the second run.
15) Message boards : Number crunching : Cannot download new work (Message 62512) Posted 27 Jul 2009 by Path7 Post: Yes David, if you have a look around, you aren't the only one. I myself have been trying to force a new WU to download to just test that the signature issue is resolved, and have been unable to get any tasks assigned. My other projects are happy to use the lull. I suggest you add ("attach") another project of your choice and change it's resource share to something smaller. Even if you only allocate 1% to a project, BOINC will work on it if it has nothing else to do. Once work does become available, it can help if you change your preferences to keep more days of work on hand. That is another way to assure you have work to crunch on even if there are short term problems with the servers. Most projects will not have work 365 days a year. Rosetta comes very close and we're all so accustomed to having things run smoothly that we sometimes forget. Hello Mod.Sense, Today I was able to download a 1.86 WU on a computer. The message from BOINC was however: 27-7-2009 18:55:00\|rosetta@home\|[error] Signature verification failed for minirosetta_database_rev31588.zip 27-7-2009 18:55:00\|rosetta@home\|[error] Check-sum or signature error for minirosetta_database_rev31588.zip Time zone: UTC +2 hours. Checked the md5 check-sums of the minirosetta_database_rev31588.zip: July 26: md5: 46b5d9302d65782d7d5815301703cc39 July 27: md5: 46b5d9302d65782d7d5815301703cc39 Thanks for your support, Path7.
16) Questions and Answers : Windows : A Rosetta task won't upload (Message 62466) Posted 26 Jul 2009 by Path7 Post: Hello Mod.Sense, Thanks for the update. Path7.
17) Questions and Answers : Windows : A Rosetta task won't upload (Message 62454) Posted 26 Jul 2009 by Path7 Post: Hello Flooter, Welcome to Rosetta@home. This job has tried repeatedly tried to upload. Everything else works. Have the same problem. Does anybody have any ideas about it?? The server seems to have some problems, I saw this messages from BOINC: zo 26 jul 2009 10:52:57 CEST\|rosetta@home\|Sending scheduler request: To fetch work. Requesting 3745 seconds of work, reporting 1 completed tasks zo 26 jul 2009 10:54:58 CEST\|\|Project communication failed: attempting access to reference site zo 26 jul 2009 10:54:59 CEST\|\|Access to reference site succeeded - project servers may be temporarily down. zo 26 jul 2009 10:54:59 CEST\|rosetta@home\|Scheduler request failed: Timeout was reached Note: This is (the old) BOINC 5.10.45, BOINC 6.xx.xx might give slightly different messages. Server problems were also reported by other Rosetta crunchers in some posts: SERVER PROBLEMS (scroll down) and: Internet access OK - project servers may be temporarily down However it is early Sunday morning in the USA I do hope someone of the Project team will fix the server problems (soon). Have a nice day, Path7.
18) Message boards : Number crunching : Problems with Minirosetta 1.80 (Message 62016) Posted 30 Jun 2009 by Path7 Post: The next task: real_core_1.5_low200_beta_low200_start_hb_t308__IGNORE_THE_REST_13046_407_0 Didn't switch to another application after 1 hour – ran on for over 7 hours. Didn't stop after runtime preference of 6 hours – was ended by the watchdog after 10 hours. Didn't checkpoint regular – rebooting after 9 hours runtime: the WU started from 2 hours runtime. The good thing: Outcome: Success. Path7.
19) Questions and Answers : Macintosh : Boinc and Time Capsule (Message 61988) Posted 28 Jun 2009 by Path7 Post: I am very new in using the system ... I would like to know where the Boinc files are created .................. Luc Hello Luc & Emigdio, Not a Mac user myself, I searched at: http://boinc.berkeley.edu/ and found a related link: http://boinc.berkeley.edu/wiki/Tools_for_Mac_OS_X You should read from: “Moving BOINC Manager or BOINC Data Folder to a Different Drive” Good Luck, Path7.
20) Message boards : Number crunching : Problems with Minirosetta 1.75 (Message 61789) Posted 16 Jun 2009 by Path7 Post: Outcome: Validate error on the next WU: looprebuild_t374_nat_6_12863_1367_0 # cpu_run_time_pref: 21600 ====================================================== DONE :: 1 starting structures 2411.7 cpu seconds This process generated 99 decoys from 99 attempts ====================================================== Boinc 5.10.45. – Windows Vista-home SP1 The second run also resulted in a validate error: Workunit: 236251112 Have a nice day, Path7.

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