Message boards : Number crunching : Mini Rosetta 3.45
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Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 24,856,012 RAC: 3,916 ![]() |
Last error due to the double slash in the path to file? :) minirosetta_database//sampling/filtered.vall.dat.2006-05-05 Oh, no - in addition to double slash it try to use file that was removed from current database revision(minirosetta_database_rev52077.zip). It was in previos revision (minirosetta_database_rev52076.zip) but was removed with 3.43 version of minirosetta. So all WUs from this series will fail. |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Another two failed quickly with the same problem. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=495892637 hyb_am_bench_4G9Q_SAVE_ALL_OUT_IGNORE_THE_REST_65001_17_1 ------------------------------------ https://boinc.bakerlab.org/rosetta/workunit.php?wuid=495890875 hyb_am_bench_4F8X_SAVE_ALL_OUT_IGNORE_THE_REST_64927_41_1 ERROR: can't open file: minirosetta_database//sampling/filtered.vall.dat.2006-05-05 ERROR:: Exit from: src/core/fragment/picking_old/vall/vall_io.cc line: 63 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish # cpu_run_time_pref: 21600 </stderr_txt> ]]> ![]() |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Theses two failed quick ~ 5 sec. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=496220220 R2x2_UM21_K18_DE05_relax_SAVE_ALL_OUT_65314_137_0 ------------------------------------------------------------ https://boinc.bakerlab.org/rosetta/workunit.php?wuid=496218708 R2x2_UM21_K18_DE05_abinitio_SAVE_ALL_OUT_65314_16_0 ====================================== ERROR: unrecognized aa LG1 ERROR:: Exit from: src/core/io/pdb/file_data.cc line: 1238 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> ![]() |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Ploop4 tasks are defective as well <message> couldn't start CreateProcess() failed - Access is denied. (0x5): -148 </message> Total rubbish tasks..should not have been sent out in the first place. Test on Ralph first before putting them here...that's what Raph is for isn't it? Beta testing..... |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Sorry about comments for Ploop4. That seems to be ok. Found out in another thread what was going on. On a different note, why are LP5 tasks ignoring the max run time of 6hrs and going for 8? |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Sorry about comments for Ploop4. That seems to be ok. Never mind this either..timer on BOINC is way off on these tasks. Actual run time is 5.95 hrs. BOINC was showing 8hrs. |
![]() Send message Joined: 3 Nov 05 Posts: 1829 Credit: 119,133,504 RAC: 4,704 ![]() |
On a different note, why are LP5 tasks ignoring the max run time of 6hrs and going for 8? It seems I'm following you around the threads! It's just a run-time preference, not max run time- it'll not start any more tasks if it calculates that it won't finish them within that period, but if it's started one then it won't dump the work it's done to keep within the period. I just pulled up this LP5 one of yours: https://boinc.bakerlab.org/rosetta/result.php?resultid=545820019 which ran for 5.98 hours! [edit] Ah - you beat me to it ;) |
Link![]() Send message Joined: 4 May 07 Posts: 356 Credit: 382,349 RAC: 0 |
It's just a run-time preference, not max run time- it'll not start any more tasks if it calculates that it won't finish them within that period, but if it's started one then it won't dump the work it's done to keep within the period. Also note the wording "Target CPU run time". It's CPU time per WU preference, not run (elapsed) time preference. I have 18 hours preference, with the CPU doing a lot of other things most tasks finish for me after 20 hours elapsed time with <17 hours CPU time. . ![]() |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
and the hits keep on coming...ploop4 strikes again: ERROR: Cannot open PDB file "y367.pdb.gz" ERROR:: Exit from: ......srccoreimport_poseimport_pose.cc line: 198 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish https://boinc.bakerlab.org/rosetta/result.php?resultid=547070758 |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
This one failed after 1min, 40sec's. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=498118247 rb_12_03_34782_65400__t000__1_C1_SAVE_ALL_OUT_IGNORE_THE_REST_66465_163_0 Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev52077.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_rb_12_03_34782_65400__t000__1_C1_robetta.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 21600 dof_atom1 atomno= 3 rsd= 1 atom1 atomno= 1 rsd= 1 atom2 atomno= 2 rsd= 1 atom3 atomno= 5 rsd= 1 atom4 atomno= 6 rsd= 1 THETA1 nan THETA3 nan PHI2 0 ERROR: AtomTree::torsion_angle_dof_id: angle range error ERROR:: Exit from: src/core/kinematics/AtomTree.cc line: 780 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> ![]() |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
This thing ran for over ten hours(10), on my 6hr limit then failed. Others had had this fail as well, Thanks for nothing! hyb_af_bench_4aimA_SAVE_ALL_OUT_IGNORE_THE_REST_57052_456_2 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=496983312 Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 21600 BOINC:: CPU time: 36354.1s, 14400s + 21600s[2012-12-11 17:50: 2:] :: BOINC WARNING! cannot get file size for default.out.gz: could not open file. Output exists: default.out.gz Size: -1 InternalDecoyCount: 0 (GZ) ----- 0 ----- Stream information inconsistent. Writing W_0000001 ====================================================== DONE :: 1 starting structures 36354.1 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== called boinc_finish </stderr_txt> ]]> Validate state Workunit error - check skipped Claimed credit 277.111340820468 Granted credit 0 application version 3.45 ![]() |
Warped Send message Joined: 15 Jan 06 Posts: 48 Credit: 1,788,185 RAC: 0 |
This thing ran for over ten hours(10), on my 6hr limit then failed. I try to remember to abort these "hyb" tasks as soon as they arrive. However, I just discovered one and it's already way over limit without a single checkpoint :-( Warped ![]() |
![]() Send message Joined: 1 Dec 05 Posts: 1958 Credit: 9,099,368 RAC: 978 ![]() |
Screensaver crash on all "endo_aa_Pan" wus (on win xp and win7) |
Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 24,856,012 RAC: 3,916 ![]() |
Screensaver crash on all "endo_aa_Pan" wus (on win xp and win7) I confirm this Screensaver(/show grapchics) crash (or hangs in some cases) on endo_aa_Pan... WUs |
![]() Send message Joined: 1 Dec 05 Posts: 1958 Credit: 9,099,368 RAC: 978 ![]() |
I confirm this And also problem with checkpoint in endo_aa_Pan... |
Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 24,856,012 RAC: 3,916 ![]() |
Confirm promlems with checkpoint too: All my endo_aa_ WUs fall back to 0.0% progress after restart. And not only "endo_aa_Pan..." but all "endo_aa_..." (endo_aa_AaeI... endo_aa_BcuI... etc.) |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
This failed after about 2min. rb_12_17_34962_66206__t000__1_C1_SAVE_ALL_OUT_IGNORE_THE_REST_68957_485_0 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=500612816 # cpu_run_time_pref: 21600 dof_atom1 atomno= 3 rsd= 1 atom1 atomno= 1 rsd= 1 atom2 atomno= 2 rsd= 1 atom3 atomno= 5 rsd= 1 atom4 atomno= 6 rsd= 1 THETA1 nan THETA3 nan PHI2 0 ERROR: AtomTree::torsion_angle_dof_id: angle range error ERROR:: Exit from: src/core/kinematics/AtomTree.cc line: 780 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ![]() |
![]() Send message Joined: 1 Dec 05 Posts: 1958 Credit: 9,099,368 RAC: 978 ![]() |
Confirm promlems with checkpoint too: Again.... Please, fix it |
![]() Send message Joined: 1 Dec 05 Posts: 1958 Credit: 9,099,368 RAC: 978 ![]() |
Confirm promlems with checkpoint too: Same problems (screen and checkpoint) on all my CDPK_aa_ |
Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 24,856,012 RAC: 3,916 ![]() |
Confirm problem with graphics app on CDPK_aa_... WUs too. Not sure about checkpoints yet. (only 2 WUs atm) |
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Number crunching :
Mini Rosetta 3.45
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