Message boards : Number crunching : Rosetta@Home version 3.26
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cmiles Send message Joined: 4 Jan 11 Posts: 9 Credit: 0 RAC: 0 |
Rosetta@Home has been updated to version 3.26. If you encounter any problems, please let us know. Thank you for your continued support. This update improves performance of the hybrid protocol for comparative modeling on symmetric targets. |
Alberto Send message Joined: 21 Jan 09 Posts: 1 Credit: 337,930 RAC: 75 |
Rosetta@Home has been updated to version 3.26. If you encounter any problems, please let us know. Thank you for your continued support. Hi, today I downloaded some new jobs of Rosetta Mini 3.24 and I can't upload the results. Is it possible that the issue is the new version of project? Thanks |
Rocco Moretti Send message Joined: 18 May 10 Posts: 66 Credit: 585,745 RAC: 0 |
today I downloaded some new jobs of Rosetta Mini 3.24 and I can't upload the results. During updates, the servers get busy from everyone automatically downloading the updates. Boinc should keep retrying to send the results, and they should get through later, when the servers are less busy. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Rocco, everything is running nicely now with this version. The credits graph is climbing back up nicely now. Well done to the team. |
Snags Send message Joined: 22 Feb 07 Posts: 198 Credit: 2,888,320 RAC: 9 |
T0535_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46221_481 both copies failed immediately with: ERROR: unrecognized aa UNX ERROR:: Exit from: src/core/io/pdb/file_data.cc line: 972 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Hi. Got this error after 5min's running. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=453105707 rb_04_06_29941_60607__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_46687_40_0 Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 14400 SIGSEGV: segmentation violation Stack trace (12 frames): [0xa9660c7] [0xf7702400] [0x8a67102] [0x8a03fa9] [0x94100f0] [0x9412d6a] [0x958f221] [0x95f6945] [0x95f4175] [0x80547ed] [0xa9f6058] [0x8048131] Exiting... </stderr_txt> ]]> ![]() |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Task ID 497264845 Name T0543_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46232_627_0 CPU time 0 stderr out <core_client_version>6.12.34</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> ]]> application version 3.26 First one of the new version on my system to have problems. Everything else is running smoothly. |
Warped Send message Joined: 15 Jan 06 Posts: 48 Credit: 1,788,185 RAC: 0 |
Thank you for improving the interval between checkpoints. For those of us who reboot from time to time, the work lost is now minimal. Warped ![]() |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
Task ID 497264845 This suggests that a small change in future versions of minirosetta could be useful: Have them send the amount of disk space they are allowed to use to an output file before doing much else. At least the lowest limit that can be determined this early in the workunit. |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
All BOINC work units are shipped with a disk space limit. If a work unit runs past this, the BOINC Manager stops it. Rosetta Moderator: Mod.Sense |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
All BOINC work units are shipped with a disk space limit. If a work unit runs past this, the BOINC Manager stops it. Then just writing that limit to the log file may be enough. |
![]() Send message Joined: 1 Dec 05 Posts: 1958 Credit: 9,099,368 RAC: 978 ![]() |
A lot of errors like this: 498556225 BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 # cpu_run_time_pref: 7200 </stderr_txt> ]]> Validate state Invalid |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Task ID 497264845 What I forgot to add in was the CPU time was 0. This makes it an even more bizzare crash. https://boinc.bakerlab.org/rosetta/result.php?resultid=497264845 |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
Task ID 497264845 I'd expect that it mean that it tried to reserve all the space it needed very early in the workunit startup, was unable to do so, and therefore the failure was seen when the amount of CPU time used was still low enough to round off to zero. |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Hi. I was the second lucky winner of this one, first run had same error. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=454867641 T0624_CASP9_br_11_starts_with_abmodels_SAVE_ALL_OUT_47293_33_1 Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ERROR: ERROR: FragmentIO: could not open file boinc_input_files/aat000_.3mers.gz ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> ![]() |
Mike Send message Joined: 30 Apr 09 Posts: 44 Credit: 65,019 RAC: 0 |
Rosetta@Home has been updated to version 3.26. If you encounter any problems, please let us know. Thank you for your continued support. Please see my thread about viewing structure predictions as pdb files in the science forum.. I am posting here since I got no reply there |
Around Send message Joined: 16 Oct 11 Posts: 3 Credit: 474,717 RAC: 0 |
With the upgrade to the latest version of BOINC (7.0.25 (x64)), I seem to have a steady stream of "computational errors" with Rosettas Mini 3.26. Cheers, Adrian |
Torsten Persson Send message Joined: 11 Feb 08 Posts: 5 Credit: 31,281,798 RAC: 2,569 ![]() |
Hi! Something happened around March 18. The daily points from my Macs, all three of them, dropped down to approx. 20% of normal and have since stayed there. My Windows machines have not been affected. What´s up? Torsten |
Mike Send message Joined: 30 Apr 09 Posts: 44 Credit: 65,019 RAC: 0 |
The Result Graphs on the website is NOT WORKING... I hope I don't get the same slow response to this that I did with my other issue. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
Hi! This thread has some discussion about macintosh machines. However the version they were talking about was 3.24 not 3.26. So whatever was happening in .24 may have not been fixed in .26 when it comes to mac's. |
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Number crunching :
Rosetta@Home version 3.26
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