Problems with minirosetta version 1.+

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par

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Message 51483 - Posted: 18 Feb 2008, 16:04:07 UTC

Is it possible that minirosetta is incompatable with older boinc managers or when running as a service? My home machine runs boinc as a service and my office machine runs boinc as a user. The home machine has the 5.4 manager and the office maching is running 5.10.

I got my first minirosetta unit at home. It would not start running and would not terminate from task manager nor allow me to launch any new programs. I could not log off or restart. I had to suspend the unit and then pull the plug for the computer. I checked the office and the minirosetta units seem to be processing fine.
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Sid Celery

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Message 51489 - Posted: 18 Feb 2008, 21:06:23 UTC

New user here who only used v5.93 a few days before minirosetta 1.07 came down. I was going to post to say progress wasn't moving at all, but just as I was about to post it jumped up by 18.xx% then stuck again. It doesn't tick up in the way I was seeing with v5.93 - just big jumps.

Also, using Norton 360 here. No false positives about viruses (Norton actually has the best record of all AVs on that score)
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Stan Wells

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Message 51493 - Posted: 19 Feb 2008, 1:38:29 UTC

Back again - all minirosetta work units working well on WinXP machine - no problem with AVG anti-virus. Five minirosetta work units have now hung on the Linux box - all of them at just under the hour mark. stan
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Stan Wells

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Message 51494 - Posted: 19 Feb 2008, 1:57:49 UTC

Noted that the 5 work units hung at just under an hour were all the "score13_hb_envtest62_A_lcg5B_xxxx" series -don't know if there is a pattern here, but I will watch it. Also noted is that I had my preferences on this computer set to switch between projects at 60 minutes. It has never switched, but thought I would change it to 120 minutes to test if that has an effect on the fail rate. also, anyone want to explain what I am supposed to do to these - they don't seem to want to start back up again after a suspend. stan

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Profile [VENETO] Wizard83

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Message 51498 - Posted: 19 Feb 2008, 10:02:50 UTC

after a few hours that the mini-rosette client runs, the computer gets stuck and I must manually restart it.
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Profile sslickerson

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Message 51531 - Posted: 21 Feb 2008, 1:42:37 UTC

This WU=141716683 completed *1* decoy in 50,720 seconds (~14 hours). The WU was immediately tagged finished given that 2 decoys would have taken approx. 28 hours and my time limit for each WU is 24 hours. I'm not sure if this is a problem but it seems very strange to me.



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M.L.

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Message 51537 - Posted: 21 Feb 2008, 10:38:05 UTC
Last modified: 21 Feb 2008, 10:39:21 UTC

My last few tasks! AMD 4800 dual core, W.XP.
141703246 129097012 18 Feb 2008 7:52:50 UTC 21 Feb 2008 8:14:14 UTC Over Success Done 8,955.58 37.50 23.35
141702622 129056759 18 Feb 2008 7:48:40 UTC 21 Feb 2008 6:48:22 UTC Over Success Done 12,047.23 50.45 35.71
141680190 129076351 18 Feb 2008 5:28:00 UTC 21 Feb 2008 6:48:22 UTC Over Success Done 11,533.53 48.30 35.71
141661569 129059218 18 Feb 2008 3:22:49 UTC 21 Feb 2008 4:07:42 UTC Over Success Done 7,383.70 30.92 16.47
141648691 129047997 18 Feb 2008 1:58:54 UTC 21 Feb 2008 0:27:22 UTC Over Success Done 10,625.06 44.49 31.64
141640562 129040790 18 Feb 2008 1:04:43 UTC 20 Feb 2008 23:48:57 UTC Over Success Done 10,178.97 42.62 29.26
141629359 129030416 17 Feb 2008 23:50:28 UTC 20 Feb 2008 21:14:11 UTC Over Success Done 10,408.38 43.59 30.87
141628647 129029811 17 Feb 2008 23:46:19 UTC 20 Feb 2008 16:51:08 UTC Over Success Done 7,252.38 30.37 19.48
141620134 128909880 17 Feb 2008 22:50:23 UTC 20 Feb 2008 16:51:08 UTC Over Success Done 8,741.13 36.60 24.68
141619408 129021418 17 Feb 2008 22:46:13 UTC 20 Feb 2008 16:51:08 UTC Over Success Done 13,753.23 57.59 41.11

All are Mini tasks..
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TomaszPawel

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Message 51556 - Posted: 22 Feb 2008, 7:37:06 UTC

Hi

https://boinc.bakerlab.org/rosetta/result.php?resultid=141445600
https://boinc.bakerlab.org/rosetta/result.php?resultid=139389351
https://boinc.bakerlab.org/rosetta/result.php?resultid=139323708

Could someone tell me why i have this errors?
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Profile caesar1987
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Message 51820 - Posted: 5 Mar 2008, 21:22:58 UTC

today my boinc get to monirosetta.. but i cant see graphics (by screensaver i have only boinc logo and text runing rosetta...) how can i go back to old rosetta?
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Profile Ian_D

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Message 51821 - Posted: 5 Mar 2008, 22:14:54 UTC - in response to Message 51820.  
Last modified: 5 Mar 2008, 22:18:00 UTC

today my boinc get to monirosetta.. but i cant see graphics (by screensaver i have only boinc logo and text runing rosetta...) how can i go back to old rosetta?


Try this explanation

From the above link

the new version of rosetta is extremely powerful, but as it is very new, there are still some rare problems surfacing, and some of the bells and whistles, such as the screensaver, are not yet in place.

Other "older" applications (Rosetta Beta 5.93 / Rosetta 5.82) are still in the mix so just abort the mini's or just let them run through to completion, your choice.


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Profile caesar1987
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Message 51822 - Posted: 5 Mar 2008, 22:19:31 UTC - in response to Message 51821.  

Try this explanation

From the above link

the new version of rosetta is extremely powerful, but as it is very new, there are still some rare problems surfacing, and some of the bells and whistles, such as the screensaver, are not yet in place.

Other "older" applications (Rosetta Beta 5.93 / Rosetta 5.82) are still in the mix so just abort the mini's or just let them run through to completion, your choice.
thx... =)

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Profile dcdc

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Message 51823 - Posted: 5 Mar 2008, 22:49:01 UTC

out of curiosity, what's the minirosetta database file?
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DemRo

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Message 51834 - Posted: 7 Mar 2008, 9:57:50 UTC

When rosetta beta was replaced by minirosetta I counted 42 failed tasks (and 0 success) with "maximum memory exceed" error.
I hope this errors are just temporary effect and soon they will be fixed.
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M.L.

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Message 51845 - Posted: 7 Mar 2008, 19:44:21 UTC
Last modified: 7 Mar 2008, 19:48:04 UTC

Task ID 145897568
Name score12_hb_envtest62_A_1tig__2935_19641_0
Workunit 133002633
Created 5 Mar 2008 18:28:56 UTC
Sent 5 Mar 2008 18:29:28 UTC
Received 7 Mar 2008 19:29:34 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 735230
Report deadline 15 Mar 2008 18:29:28 UTC
CPU time 2055.751


stderr out

<core_client_version>5.10.30</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 14400
Graphics are disabled due to configuration...
Graphics are disabled due to configuration...
error: cannot delete old ./minirosetta_database/scoring/weights/dna.wts
error: cannot delete old ./minirosetta_database/scoring/weights/beta_soft_rep.wts
error: cannot delete old ./minirosetta_database/scoring/weights/gen_born.wts
error: cannot delete old ./minirosetta_database/scoring/weights/ligand_soft_rep_gen_born.wts
error: cannot delete old ./minirosetta_database/scoring/weights/score5.wts

ERROR: Unable to open weights. Neither ./score5 nor minirosetta_databasescoring/weights/score5.wtsexist
ERROR:: Exit from: ....srccorescoringScoreFunctionFactory.cc line: 57
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 8.46439133129388
Granted credit 0
application version 1.07

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M.L.

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Message 51846 - Posted: 7 Mar 2008, 19:49:31 UTC

Not sure what happened with these two tasks>

Task ID 145928336
Name score12_hb_envtest62_A_1a19A_2935_24190_0
Workunit 133029909
Created 5 Mar 2008 21:34:09 UTC
Sent 5 Mar 2008 21:34:50 UTC
Received 7 Mar 2008 19:38:37 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 0 (0x0)
Computer ID 735230
Report deadline 15 Mar 2008 21:34:50 UTC
CPU time 12.98438
stderr out

<core_client_version>5.10.30</core_client_version>
<![CDATA[
<stderr_txt>
Graphics are disabled due to configuration...
Graphics are disabled due to configuration...
Graphics are disabled due to configuration...
No heartbeat from core client for 30 sec - exiting
Graphics are disabled due to configuration...
Graphics are disabled due to configuration...
Too many restarts with no progress. Keep application in memory while preempted.
======================================================
DONE :: 1 starting structures 12.3906 cpu seconds
This process generated 0 decoys from 0 attempts
======================================================


BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>score12_hb_envtest62_A_1a19A_2935_24190_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

Validate state Invalid
Claimed credit 0.0534621525244184
Granted credit 0
application version 1.07
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mike46360

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Message 51849 - Posted: 7 Mar 2008, 23:48:13 UTC

I noticed I'm getting more Mini jobs..how far out is a graphics version? Any time lines?
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Klimax

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Message 51852 - Posted: 8 Mar 2008, 9:31:55 UTC - in response to Message 51849.  

I noticed I'm getting more Mini jobs..how far out is a graphics version? Any time lines?

Mini with graphic(simple) is just on RAPLH in testing...
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M.L.

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Message 51854 - Posted: 8 Mar 2008, 13:59:27 UTC

Re msg 51846 &51845.
Just realised that at the time these two tasks were running I was attacked by -MONARONADONA-.
Tech support at my ISP had to intervene and run their own cleaner, hopefully am now clean.
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Alan Roberts

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Message 52069 - Posted: 21 Mar 2008, 22:33:10 UTC

Just noticed three of my herd had stopped responding. Checked and found them stuck on MiniRosetta 1.07/1.09s, with either zero percent of job completed (after several days of elapsed), or stuck at 2-4% (again after several days).

Aborted WUs are: 132872148, 133115230, and 135200312. The machines are all dual-CPU Xeons, Win2K Server.

Unfortunately I don't have time to chase this thread right now ... If there is some action I need to take for a fix can somebody point me at the details?

Thanks,
Alan

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Paul

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Message 52358 - Posted: 10 Apr 2008, 10:10:44 UTC

What happened to Mini? I had hundreds of WUs a few weeks ago and now I have none. Did mini go back to Ralph for a while? When should we expect to see it again?
Thx!

Paul

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Message boards : Number crunching : Problems with minirosetta version 1.+



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