Rosetta 4.1+

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James W

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Message 90455 - Posted: 1 Mar 2019, 7:47:57 UTC

Application version Rosetta for Android v4.10
Device 3396190, Task 1059800641, and WU 954742471.
Status: Error while computing.
Exit status: 0 (0x00000000)

CPU type ARM AArch64 Processor rev 3 (aarch64)
Operating System Android 3.18.19-g407ac4f82ff (Android 5.1.1)
Device: Amazon Fire tablet
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu @rb_02_26_1347_1493_ab_t000__h001_robetta_FLAGS -in::file::fasta t000__h001.fasta -psipred_ss2 t000__h001.spider3_ss2 -kill_hairpins t000__h001.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_26_1347_1493_ab_t000__h001_robetta.zip -frag3 rb_02_26_1347_1493_ab_t000__h001_robetta.200.3mers.index.gz -fragA rb_02_26_1347_1493_ab_t000__h001_robetta.200.15mers.index.gz -fragB rb_02_26_1347_1493_ab_t000__h001_robetta.200.5mers.index.gz -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1840497

WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x26cc
WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
Too many restarts with no progress. Keep application in memory while preempted.

The two warnings above repeat numerous times.
upload failure: <file_xfer_error>
<file_name>rb_02_26_1347_1493_ab_t000__h001_robetta_IGNORE_THE_REST_05_15_818663_8_0_r313824602_0</file_name>
<error_code>-161 (not found)</error_code></file_xfer_error>
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James W

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Message 90456 - Posted: 1 Mar 2019, 8:08:56 UTC

Application version Rosetta for Android v4.10
Device 3396190, Task 1060134981, and WU 955048899
Status: Error while computing.
Errors: Too many errors (may have bug). Too many total results.
Exit status: 0 (0x00000000)

CPU type ARM AArch64 Processor rev 3 (aarch64)
Operating System Android 3.18.19-g407ac4f82ff (Android 5.1.1)
Device: Amazon Fire tablet
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu @rb_02_26_1346_1490_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_26_1346_1490_ab_t000__robetta.zip -frag3 rb_02_26_1346_1490_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_26_1346_1490_ab_t000__robetta.200.16mers.index.gz -fragB rb_02_26_1346_1490_ab_t000__robetta.200.10mers.index.gz -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1861768

WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x26cc
WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
Too many restarts with no progress. Keep application in memory while preempted.

The two warnings above repeat numerous times.
<message>upload failure: <file_xfer_error>
<file_name>rb_02_26_1346_1490_ab_t000__robetta_IGNORE_THE_REST_10_16_818658_17_0_r1934950353_0</file_name>
<error_code>-161 (not found)</error_code></file_xfer_error>

Mine was the first task as noted above.
Second task failed due to "Error while downloading."
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James W

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Message 90460 - Posted: 2 Mar 2019, 7:41:15 UTC

Application version Rosetta for Android v4.10
Device 3396190, Task 1060169629, and WU 955080582.
Status: Error while computing.
Exit status: 0 (0x00000000)

CPU type ARM AArch64 Processor rev 3 (aarch64)
Operating System Android 3.18.19-g407ac4f82ff (Android 5.1.1)
Device: Amazon Fire tablet
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu @rb_02_26_1338_1483_ab_t000__h001_robetta_FLAGS -in::file::fasta t000__h001.fasta -psipred_ss2 t000__h001.spider3_ss2 -kill_hairpins t000__h001.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_26_1338_1483_ab_t000__h001_robetta.zip -frag3 rb_02_26_1338_1483_ab_t000__h001_robetta.200.3mers.index.gz -fragA rb_02_26_1338_1483_ab_t000__h001_robetta.200.5mers.index.gz -fragB rb_02_26_1338_1483_ab_t000__h001_robetta.200.8mers.index.gz -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1934536

WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x26cc
WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
Too many restarts with no progress. Keep application in memory while preempted.

The two warnings above repeat numerous times.
upload failure: <file_xfer_error>
<file_name>rb_02_26_1338_1483_ab_t000__h001_robetta_IGNORE_THE_REST_08_05_818648_19_0_r1385013819_0</file_name>
<error_code>-161 (not found)</error_code></file_xfer_error>
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James W

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Message 90465 - Posted: 3 Mar 2019, 1:52:38 UTC

Application version Rosetta for Android v4.10
Device 3396190, Task 1060310226, and WU 955205123.
Status: Error while computing.
Exit status: 0 (0x00000000)

CPU type ARM AArch64 Processor rev 3 (aarch64)
Operating System Android 3.18.19-g407ac4f82ff (Android 5.1.1)
Device: Amazon Fire tablet
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu @rb_02_26_1343_1487_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_26_1343_1487_ab_t000__robetta.zip -frag3 rb_02_26_1343_1487_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_26_1343_1487_ab_t000__robetta.200.18mers.index.gz -fragB rb_02_26_1343_1487_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1884457

WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x26cc
WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
Too many restarts with no progress. Keep application in memory while preempted.

The two warnings above repeat numerous times.
upload failure: <file_xfer_error>
<file_name>rb_02_26_1343_1487_ab_t000__robetta_IGNORE_THE_REST_07_18_818655_28_0_r238708826_0</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
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James W

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Message 90466 - Posted: 3 Mar 2019, 5:39:22 UTC

Application version Rosetta for Android v4.10
Device 3182472, Task 1060286201, and WU 955183565.
Status: Error while computing.
Exit status: 11 (0x0000000B) Unknown error code

CPU type ARM ARMv7 Processor rev 0 (v7l)
Operating System: Android 3.10.49-9411209 (Android 6.0.1)
Device: Samsung SM-S320VL - SDK:23 ABI: armeabi-v7a
process got signal 11
</message><stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.10_arm-android-linux-gnu @rb_02_26_1343_1487_ab_t000__h002_robetta_FLAGS -in::file::fasta t000__h002.fasta -psipred_ss2 t000__h002.spider3_ss2 -kill_hairpins t000__h002.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_26_1343_1487_ab_t000__h002_robetta.zip -frag3 rb_02_26_1343_1487_ab_t000__h002_robetta.200.3mers.index.gz -fragA rb_02_26_1343_1487_ab_t000__h002_robetta.200.14mers.index.gz -fragB rb_02_26_1343_1487_ab_t000__h002_robetta.200.3mers.index.gz -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1873660
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hoarfrost

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Message 90590 - Posted: 28 Mar 2019, 9:23:58 UTC
Last modified: 28 Mar 2019, 9:24:12 UTC

Got new 4 tasks. All completed and validated successfully. Problem that noted previously - did not happen, but only 4 tasks crunched simultaneosuly. Could you generate new bunch of tasks but send 1 or 2 tasks per device, or limit the number of tasks run on device depending on it's RAM?

Thank you for science!
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James W

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Message 91255 - Posted: 12 Oct 2019, 9:51:15 UTC

Application version: Rosetta for Android v4.11
Device 3182472, Task 1098710718, and WU 989434812.
Status: Error while computing.
Errors: Too many errors (may have bug). Too many total results.
Exit status: 194 (0x000000C2) EXIT_ABORTED_BY_CLIENT

CPU type ARM - ARM ARMv7 Processor rev 0 (v7l)
Operating System Android 3.10.49-9411209 (Android 6.0.1)
Device: Samsung SM-S320VL phone
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.11_arm-android-linux-gnu @PJSI28K_android_PJS-I-28K_7_DALA_0001.flags -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1618567

<message>finish file present too long</message>
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James W

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Message 91279 - Posted: 17 Oct 2019, 7:57:14 UTC

Application version: Rosetta for Android v4.11
Device: 3182472, Task: 1099197108, and WU: 990066716.
Status: Error while computing.
Exit status: 194 (0x000000C2) EXIT_ABORTED_BY_CLIENT

CPU type ARM - ARM ARMv7 Processor rev 0 (v7l)
Operating System Android 3.10.49-9411209 (Android 6.0.1)
Device: Samsung SM-S320VL phone
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.11_arm-android-linux-gnu @23Dxtlgp_913_2339_0001_d.flags -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1330378

<message>finish file present too long</message>
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James W

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Message 91290 - Posted: 20 Oct 2019, 8:41:28 UTC

Application version: Rosetta for Android v4.11
Device: 3182472, Task: 1099197072, and WU: 990066644.
Status: Error while computing.
Exit status: 194 (0x000000C2) EXIT_ABORTED_BY_CLIENT

CPU type ARM - ARM ARMv7 Processor rev 0 (v7l)
Operating System Android 3.10.49-9411209 (Android 6.0.1)
Device: Samsung SM-S320VL phone
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.11_arm-android-linux-gnu @23Dxtlgp_913_2339_0001_d.flags -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1330450

<message>finish file present too long</message>
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James W

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Message 91297 - Posted: 22 Oct 2019, 5:45:33 UTC

Application version Rosetta for Android v4.10
Device 3396190, Task 1098727938, and WU 989435867.
Status: Error while computing.
Exit status: 196 (0x000000C4) EXIT_DISK_LIMIT_EXCEEDED
Errors: Too many errors (may have bug) Too many total results

CPU type ARM AArch64 Processor rev 3 (aarch64)
Operating System Android 3.18.19-g1a1ee9cbdeb (Android 5.1.1)
Device: Amazon Fire tablet
<message>Maximum disk usage exceeded</message>
WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.11_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.11_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x26a0

The two warnings above repeat numerous times.
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Message boards : Number crunching : Rosetta 4.1+



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