Rosetta@Home version 3.26

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cmiles

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Message 72675 - Posted: 5 Apr 2012, 17:30:13 UTC

Rosetta@Home has been updated to version 3.26. If you encounter any problems, please let us know. Thank you for your continued support.

This update improves performance of the hybrid protocol for comparative modeling on symmetric targets.
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Alberto

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Message 72683 - Posted: 5 Apr 2012, 21:57:27 UTC - in response to Message 72675.  

Rosetta@Home has been updated to version 3.26. If you encounter any problems, please let us know. Thank you for your continued support.

This update improves performance of the hybrid protocol for comparative modeling on symmetric targets.


Hi,
today I downloaded some new jobs of Rosetta Mini 3.24 and I can\'t upload the results.
Is it possible that the issue is the new version of project?
Thanks
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Rocco Moretti

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Message 72685 - Posted: 6 Apr 2012, 0:04:27 UTC - in response to Message 72683.  

today I downloaded some new jobs of Rosetta Mini 3.24 and I can\'t upload the results.


During updates, the servers get busy from everyone automatically downloading the updates. Boinc should keep retrying to send the results, and they should get through later, when the servers are less busy.
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Profile Greg_BE
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Message 72691 - Posted: 6 Apr 2012, 23:55:02 UTC

Rocco, everything is running nicely now with this version.
The credits graph is climbing back up nicely now.
Well done to the team.
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Snags

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Message 72695 - Posted: 7 Apr 2012, 20:26:58 UTC
Last modified: 7 Apr 2012, 20:27:46 UTC

T0535_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46221_481

both copies failed immediately with:

ERROR: unrecognized aa UNX
ERROR:: Exit from: src/core/io/pdb/file_data.cc line: 972
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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P . P . L .

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Message 72696 - Posted: 8 Apr 2012, 3:30:54 UTC

Hi.

Got this error after 5min\'s running.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=453105707

rb_04_06_29941_60607__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_46687_40_0

Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 14400
SIGSEGV: segmentation violation
Stack trace (12 frames):
[0xa9660c7]
[0xf7702400]
[0x8a67102]
[0x8a03fa9]
[0x94100f0]
[0x9412d6a]
[0x958f221]
[0x95f6945]
[0x95f4175]
[0x80547ed]
[0xa9f6058]
[0x8048131]

Exiting...

</stderr_txt>
]]>

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Profile Greg_BE
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Message 72710 - Posted: 9 Apr 2012, 7:11:22 UTC
Last modified: 9 Apr 2012, 7:13:26 UTC

Task ID 497264845
Name T0543_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46232_627_0
CPU time 0
stderr out

<core_client_version>6.12.34</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>
application version 3.26

First one of the new version on my system to have problems.
Everything else is running smoothly.
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Warped

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Message 72757 - Posted: 14 Apr 2012, 13:13:15 UTC

Thank you for improving the interval between checkpoints. For those of us who reboot from time to time, the work lost is now minimal.
Warped

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Profile robertmiles

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Message 72761 - Posted: 14 Apr 2012, 21:44:22 UTC - in response to Message 72710.  

Task ID 497264845
Name T0543_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46232_627_0
CPU time 0
stderr out

<core_client_version>6.12.34</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>
application version 3.26

First one of the new version on my system to have problems.
Everything else is running smoothly.


This suggests that a small change in future versions of minirosetta could be useful:

Have them send the amount of disk space they are allowed to use to an output file before doing much else. At least the lowest limit that can be determined this early in the workunit.
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Mod.Sense
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Message 72762 - Posted: 15 Apr 2012, 0:01:40 UTC

All BOINC work units are shipped with a disk space limit. If a work unit runs past this, the BOINC Manager stops it.
Rosetta Moderator: Mod.Sense
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Profile robertmiles

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Message 72764 - Posted: 15 Apr 2012, 0:35:25 UTC - in response to Message 72762.  

All BOINC work units are shipped with a disk space limit. If a work unit runs past this, the BOINC Manager stops it.


Then just writing that limit to the log file may be enough.
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Profile [VENETO] boboviz

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Message 72767 - Posted: 15 Apr 2012, 6:58:22 UTC

A lot of errors like this:
498556225



BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
# cpu_run_time_pref: 7200

</stderr_txt>
]]>

Validate state Invalid
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Profile Greg_BE
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Message 72768 - Posted: 15 Apr 2012, 11:56:09 UTC - in response to Message 72761.  

Task ID 497264845
Name T0543_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46232_627_0
CPU time 0
stderr out

<core_client_version>6.12.34</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>
application version 3.26

First one of the new version on my system to have problems.
Everything else is running smoothly.


This suggests that a small change in future versions of minirosetta could be useful:

Have them send the amount of disk space they are allowed to use to an output file before doing much else. At least the lowest limit that can be determined this early in the workunit.


What I forgot to add in was the CPU time was 0.
This makes it an even more bizzare crash.
http://boinc.bakerlab.org/rosetta/result.php?resultid=497264845
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Profile robertmiles

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Message 72780 - Posted: 16 Apr 2012, 3:48:30 UTC - in response to Message 72768.  
Last modified: 16 Apr 2012, 3:50:02 UTC

Task ID 497264845
Name T0543_boinc_casp9_abinitio_smooth_abrelax_smooth_cmiles_SAVE_ALL_OUT_46232_627_0
CPU time 0
stderr out

<core_client_version>6.12.34</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>
application version 3.26

First one of the new version on my system to have problems.
Everything else is running smoothly.


This suggests that a small change in future versions of minirosetta could be useful:

Have them send the amount of disk space they are allowed to use to an output file before doing much else. At least the lowest limit that can be determined this early in the workunit.


What I forgot to add in was the CPU time was 0.
This makes it an even more bizzare crash.
http://boinc.bakerlab.org/rosetta/result.php?resultid=497264845


I\'d expect that it mean that it tried to reserve all the space it needed very early in the workunit startup, was unable to do so, and therefore the failure was seen when the amount of CPU time used was still low enough to round off to zero.
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Message 72782 - Posted: 16 Apr 2012, 9:06:46 UTC

Hi.

I was the second lucky winner of this one, first run had same error.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=454867641

T0624_CASP9_br_11_starts_with_abmodels_SAVE_ALL_OUT_47293_33_1

Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.

ERROR: ERROR: FragmentIO: could not open file boinc_input_files/aat000_.3mers.gz
ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>

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Mike

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Message 72791 - Posted: 16 Apr 2012, 16:48:11 UTC - in response to Message 72675.  

Rosetta@Home has been updated to version 3.26. If you encounter any problems, please let us know. Thank you for your continued support.

This update improves performance of the hybrid protocol for comparative modeling on symmetric targets.



Please see my thread about viewing structure predictions as pdb files in the science forum.. I am posting here since I got no reply there
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Around

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Message 72820 - Posted: 18 Apr 2012, 20:26:51 UTC

With the upgrade to the latest version of BOINC (7.0.25 (x64)), I seem to have a steady stream of \"computational errors\" with Rosettas Mini 3.26.

Cheers,

Adrian
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Torsten Persson

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Message 72822 - Posted: 18 Apr 2012, 22:40:16 UTC

Hi!
Something happened around March 18. The daily points from my Macs, all three of them, dropped down to approx. 20% of normal and have since stayed there. My Windows machines have not been affected. What´s up?

Torsten
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Mike

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Message 72824 - Posted: 18 Apr 2012, 22:59:15 UTC

The Result Graphs on the website is NOT WORKING... I hope I don\'t get the same slow response to this that I did with my other issue.
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Profile Greg_BE
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Message 72825 - Posted: 18 Apr 2012, 23:11:21 UTC - in response to Message 72822.  

Hi!
Something happened around March 18. The daily points from my Macs, all three of them, dropped down to approx. 20% of normal and have since stayed there. My Windows machines have not been affected. What´s up?

Torsten



This thread has some discussion about macintosh machines. However the version they were talking about was 3.24 not 3.26. So whatever was happening in .24 may have not been fixed in .26 when it comes to mac\'s.
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Message boards : Number crunching : Rosetta@Home version 3.26



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