|
1)
Message boards :
Number crunching :
Waiting for memory, have 60 GB RAM and 30 cores available to Boinc.
(Message 109943)
Posted 30 Oct 2024 by Klimax Post: One of the major flaws of Windows, is if an application requests XXX amount of RAM to use, Windows reserves that XXX amount of RAM, even if the application never actually uses that XXX amount of RAM, but only X amount. And you don't have any control over what the application requests for RAM reservation requested. That comes from the task generator template values the admin/scientist sets up for the tasks to use for work generation. It should be noted that programmers can just reserve memory without actual allocation by using VirtualAlloc function with specific flags (https://learn.microsoft.com/en-us/windows/win32/api/memoryapi/nf-memoryapi-virtualalloc). Unfortunately, it means custom allocators. BTW: I thought Linux stopped by default overcommitting too some time ago. |
|
2)
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
(Message 109887)
Posted 17 Oct 2024 by Klimax Post: BTW: My cache is configured for 1+1. As long as computer is running 24h there soul be a day of reserve.Setting it that way may not give you what you might expect it to. After quick verification on another project... damn you are correct. I was misunderstanding that option for past 17 years or so. |
|
3)
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
(Message 109859)
Posted 13 Oct 2024 by Klimax Post: Also only three days of deadline?Which has been the case for years now, and which is why you don't return a large amount of the work you download- you miss the deadline almost 50% of the time. While on surface or first pass you'd be correct, things are bit more complex (Side note: My question about deadlines shows how long ago I fully paid attention to project). First, variable memory consumption. Often several tasks are waiting for others to finish or to drop currently allocated memory (Seems that nlike others, I got tasks that keep all 2GB allocated even way later). Second, BOINC or Rosetta has very weird accounting of remaining time to completion. (Lots of task are now around 50% mark yet estimated time to completion is still 12 hours, while waiting tasks have 8 hours. (And yes, my target runtime is 12 hours) All those canceled were in any case from beginning of month were computer was configured for all 20 cores to be used and ran out of memory very fast making lost of tasks waiting for memory and thus lots of cancellations. I have since then changed configuration to use only 10 cores, so same situation shouldn't occur. BTW: My cache is configured for 1+1. As long as computer is running 24h there soul be a day of reserve. ETA: Looks like some tasks finally dropped in memory usage to 1GB and one to 700MB. |
|
4)
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
(Message 109850)
Posted 12 Oct 2024 by Klimax Post: All of my tasks are using after several hours about 2GBs. Also only three days of deadline? Will be tight. |
|
5)
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
(Message 109801)
Posted 2 Oct 2024 by Klimax Post: So that explains why WUs are failing on one of my computers. 20 threads and only 16GB of RAM and fairly small paging file. They could have warned us...It's been the general rule of thumb since i've been here (a bit over 4 years)- 1.5GB of RAM per core/thread is needed in order to do Rosetta work. Argh. I just ( after writing a reply) realized what happened. NumberFields uses OpenCL for multiprecision arithmetic and OCL compiler will during compilation use up lots of RAM (sharp increase to few GBs, after it it will return back to fairly small footprint). So I have enough of virtual memory, when it's not being exhausted by another project... |
|
6)
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
(Message 109798)
Posted 2 Oct 2024 by Klimax Post: Glitch fixed, and lo and behold- new work! So that explains why WUs are failing on one of my computers. 20 threads and only 16GB of RAM and fairly small paging file. They could have warned us... |
|
7)
Message boards :
Rosetta@home Science :
Unable to get any work
(Message 108750)
Posted 7 Dec 2023 by Klimax Post: Hi there. Apologies if this is posted in the wrong area, but I am unable to get work. Also NumberFields support Intel GPUs. |
|
8)
Message boards :
Number crunching :
สล็อตเว็บตรง
(Message 108538)
Posted 28 Aug 2023 by Klimax Post: There might be a bug in report feature. (There's PHP warning message at the top of page on successful report) |
|
9)
Message boards :
News :
Rosetta's role in fighting coronavirus
(Message 108533)
Posted 27 Aug 2023 by Klimax Post: Is Rosetta@home still running? I've been a member of this project for years, and I'm not getting any tasks. I looked at my Projects page and it says "Won't get new tasks." What did I do? How do I get new tasks? Pretty sure "Won't get new tasks" tells BOINC not to request any new work from Project. Recently there were some new batches of work. |
|
10)
Message boards :
Cafe Rosetta :
DreamLab now available for Android and iOS
(Message 93954)
Posted 9 Apr 2020 by Klimax Post: Hm, mobile only and it is not clear if it is even available outside of UK. |
|
11)
Message boards :
Number crunching :
Rosetta@home using AVX / AVX2 ?
(Message 93952)
Posted 9 Apr 2020 by Klimax Post: It's time for SSEx/Avx support?? It should be noted, that x86-64 mandates SSE2 support and as such any 64-bit CPU supports it. |
|
12)
Message boards :
Number crunching :
How might memory effect R@h processing?
(Message 93463)
Posted 5 Apr 2020 by Klimax Post: [snip] Resource contention, nothing less, nothing more. Nothing exotic or unknowable. ZEN architecture is strong on memory bandwidth but bad on memory latency. Even if you have relatively larger cache there will be still lots of memory access that has to be fulfilled from main memory. Because of that too many core doing access will overload memory bus and their performance will drop of sharply. (Especially when latency of memory access is already high) I suggest you experiment with number of concurrent task for RAH to find equilibrium. Alternately, you could try to see if you can get memory to higher frequency without worsening its timing. Also ensure that there is no swapping. (IIRC each 4.12 task needs about 2GB of RAM which amounts to about 128GB of RAM in use beside all other processes already running) |
|
13)
Message boards :
Number crunching :
Stalled downloads
(Message 93194)
Posted 3 Apr 2020 by Klimax Post: So maybe allow repeated attempts to download for a maximum 24hrs, else abort? But could be a loss of connectivity at the user end, or at the project end? I think it is work around for various captive portals and security appliances/gateways that might block connection with custom error page. |
|
14)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 92859)
Posted 1 Apr 2020 by Klimax Post: Would it be possible to support Windows on ARM (WOA) too? |
|
15)
Message boards :
News :
Rosetta's role in fighting coronavirus
(Message 92718)
Posted 31 Mar 2020 by Klimax Post: I was surprised when I saw a comment from someone who had queue for a couple of days. I joined the project about 10 days ago and I usually got 2-3 extra tasks besides the 12 running tasks. My tasks take 7-8 hours to complete so I never got a large queue. Wonder why there's such a big difference. BOINC settings. For example I have 1 day of work + extra 1 day as a buffer with Rosetta runtime set at 12 hours. |
|
16)
Message boards :
Number crunching :
Problems with Minirosetta v1.54
(Message 60540)
Posted 7 Apr 2009 by Klimax Post: Klimax, why don't you go ahead and take a dump and EMail it to me, along with details on what you observered with it as it ran. I will forward it to the Project Team. Ups,didn't know :-( Last time I reported it,I was told to let it finish and upload.(IIRC) Mail is being prepared. |
|
17)
Message boards :
Number crunching :
Problems with Minirosetta v1.54
(Message 60526)
Posted 7 Apr 2009 by Klimax Post: Again another task is now not crunching due to "Accepted Energy:1.#QNAN" and "Accpeted RMSD:1.#QQ". It is 39.50% Complete ; Model:11 Step 7788. I have now suspended task. I can create dump file.Should I? Or is it already fixed in next version? |
|
18)
Message boards :
Cafe Rosetta :
S'tel klat drawkcab!
(Message 59708)
Posted 21 Feb 2009 by Klimax Post: Siht si ssendab... |
|
19)
Message boards :
Number crunching :
Problems with Minirosetta v1.54
(Message 59465)
Posted 8 Feb 2009 by Klimax Post: Hello. OK,set runtime at 8hours,so watchdog would cut it at 24hours.It has now uploaded and reported it.I have dump files as well,if somebody in team is interested.(Captured at reported time and step) And I see I was not alone... :-( |
|
20)
Message boards :
Number crunching :
Problems with Minirosetta v1.54
(Message 59418)
Posted 7 Feb 2009 by Klimax Post: Hello. Following task (http://boinc.bakerlab.org/rosetta/result.php?resultid=225859224) is suspended as it has produced "accepted energy": QNAN(Not a Number?) and RMSD: QO.Model number 25 step 9518. Running time: 20h 2min 21sec. Set runtime 24h. For now suspended.No crash before. OS:Windows 7 beta.I can create dump file using task manager. Should I let it try to finish? Thanks |
©2026 University of Washington
https://www.bakerlab.org