Problems and Technical Issues with Rosetta@home

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kotenok2000
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Message 105247 - Posted: 26 Feb 2022, 19:06:42 UTC - in response to Message 105246.  

I think you can download osx version
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Tom Coradeschi

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Message 105248 - Posted: 26 Feb 2022, 19:15:31 UTC - in response to Message 105247.  

Thanks, all. The High Sierra machine is my workshop station, crunches WUs 24/7 unless I'm in the shop (like now, sharpening an axe), so maybe I'll give that a shot. The other is my wife's desktop system. Not gunna mess too much with that one.

Best regards,
Tom C
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Tom Coradeschi

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Message 105249 - Posted: 26 Feb 2022, 19:17:00 UTC - in response to Message 105248.  

And, while I was typing that, it downloaded 6 WUs. Murphy's Law!
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Profile Grant (SSSF)

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Message 105253 - Posted: 27 Feb 2022, 0:17:33 UTC

Well Python Tasks in progress has finally cracked 20,000.
Which is only 4% of the compute resources that are (or were) available for Rosetta 4.20.
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Jim1348

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Message 105256 - Posted: 27 Feb 2022, 2:17:38 UTC - in response to Message 105253.  

The number of jobs is also down considerably.
Total queued jobs: 1,649,208

It looks like they weeded out a lot of them, either because they were producing errors or they were of low scientific priority.
So they may be getting a bit more realistic, though they still have a way to go to improve their app.

This is their best hope.
https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14930&postid=105000#105000
But they have to have someone on the job to do it.
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Profile Greg_BE
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Message 105257 - Posted: 27 Feb 2022, 13:54:40 UTC - in response to Message 105256.  
Last modified: 27 Feb 2022, 13:57:00 UTC

This is their best hope.
https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14930&postid=105000#105000
But they have to have someone on the job to do it.



Who has the connection to the team?
Someone in touch with DEK?
He is the tech guru.
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Message 105258 - Posted: 27 Feb 2022, 13:55:55 UTC - in response to Message 105256.  
Last modified: 27 Feb 2022, 13:56:30 UTC

[quote]The number of jobs is also down considerably.
Total queued jobs: 1,649,208 [quote]

--------------

Queued job is not so important as unsent tasks.
That is what tells us what is coming really soon.
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Profile Greg_BE
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Message 105259 - Posted: 27 Feb 2022, 14:00:21 UTC

Tom Coradeschi - for #4 - choose some other projects to keep your system busy while waiting for non VM tasks (if that is all you want)

What do you want to do? Math, Astro, Health?
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Dave

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Message 105261 - Posted: 27 Feb 2022, 14:31:39 UTC

Pretty sure this will have been answered before but I didn't find it on a quick search. With nothing available from my normal projects I downloaded 16 tasks to run on my Ryzen7 All are showing

Sun 27 Feb 2022 11:26:55 GMT | Rosetta@home | Task aaam-ABU-PHE_pp-mNMABU-AMACBEN2_13_2375631_2_0 postponed for 86400 seconds: Communication with VM Hypervisor failed.



Ubuntu 21.10, BOINC7.19.0 (Built from source about two weeks ago.) VB6.1 installed.
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Jim1348

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Message 105262 - Posted: 27 Feb 2022, 17:01:04 UTC - in response to Message 105258.  
Last modified: 27 Feb 2022, 17:08:28 UTC

Queued job is not so important as unsent tasks.
That is what tells us what is coming really soon.

No, it is the opposite. Queued jobs are the total they have (that they are telling us about at any rate).
The unsent jobs are just the work buffer. If they have anything in the queue, then the buffer gets filled.

When the queued jobs go to zero, that is when we run out.
Though if you can't do the pythons, then you probably want to keep an eye on that part. I do both.
But it would be better if they showed the difference in the queue. That is probably what you are referring to.
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Tom Coradeschi

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Message 105263 - Posted: 27 Feb 2022, 17:41:44 UTC - in response to Message 105259.  

Tom Coradeschi - for #4 - choose some other projects to keep your system busy while waiting for non VM tasks (if that is all you want)

What do you want to do? Math, Astro, Health?


Yep - essentially what I was thinking with #3:-)
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Message 105264 - Posted: 27 Feb 2022, 19:17:04 UTC - in response to Message 105263.  

Well again, what are you looking for?

Lots of possibilities out there, a new one that has been mentioned that is not Vbox related is gene@home.
LHC@home for physics
Einstein for Gravity waves from black holes
SiDock (health related)
If you want to work your GPU's hard run Prime Grid.

Outside of BOINC some of us run folding at home.
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Message 105265 - Posted: 27 Feb 2022, 19:57:28 UTC - in response to Message 105264.  
Last modified: 27 Feb 2022, 19:58:22 UTC

Outside of BOINC some of us run folding at home.

A lot of people apparently avoid Folding because it uses its own client software. But I think it is probably the most innovative and useful project around.
It used to share that status with Rosetta in my estimation, but it is hard to justify that these days (for the work that they send to us at any rate).

I run both, usually using Folding on the GPU and BOINC on the CPU of any given machine. You just delete the CPU slot in Folding for that, and then reserve a core in BOINC for Folding on the GPU.
In fact, increasingly I am running the CPUs on Folding too. They don't get as many points as the GPU, but it is somewhat different science on smaller molecules (peptides) that appears to be quite important.
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Message 105267 - Posted: 27 Feb 2022, 22:27:21 UTC - in response to Message 105265.  

Outside of BOINC some of us run folding at home.

A lot of people apparently avoid Folding because it uses its own client software. But I think it is probably the most innovative and useful project around.
It used to share that status with Rosetta in my estimation, but it is hard to justify that these days (for the work that they send to us at any rate).

I run both, usually using Folding on the GPU and BOINC on the CPU of any given machine. You just delete the CPU slot in Folding for that, and then reserve a core in BOINC for Folding on the GPU.
In fact, increasingly I am running the CPUs on Folding too. They don't get as many points as the GPU, but it is somewhat different science on smaller molecules (peptides) that appears to be quite important.



It's not about points to me. Its about advancing the science with the hope they can use it to fight whatever they are looking at. You don't get anything for points, just a status symbol among BOINC users.
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Message 105268 - Posted: 27 Feb 2022, 22:29:23 UTC - in response to Message 105262.  

Queued job is not so important as unsent tasks.
That is what tells us what is coming really soon.

No, it is the opposite. Queued jobs are the total they have (that they are telling us about at any rate).
The unsent jobs are just the work buffer. If they have anything in the queue, then the buffer gets filled.

When the queued jobs go to zero, that is when we run out.
Though if you can't do the pythons, then you probably want to keep an eye on that part. I do both.
But it would be better if they showed the difference in the queue. That is probably what you are referring to.



But is the queue shown on the page the real queue?
I would love to see the breakdown by task type vs some number.
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Message 105272 - Posted: 28 Feb 2022, 2:17:30 UTC - in response to Message 105267.  

It's not about points to me. Its about advancing the science with the hope they can use it to fight whatever they are looking at. You don't get anything for points, just a status symbol among BOINC users.

Certainly. But it is a little more subtle on Folding, since both GPUs and CPUs do the same sort of thing, molecular dynamics (MD). So it is often thought that since the GPUs are getting more points, they are more valuable. But that is not quite how it works, since they are doing different types of work on different types of molecules. It helps to see the task descriptions, which the researcher provides for every work unit at Folding. That is quite different than here, to make an obvious point.
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Message 105275 - Posted: 28 Feb 2022, 3:41:49 UTC - in response to Message 105257.  

This is their best hope.
https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14930&postid=105000#105000
But they have to have someone on the job to do it.

Who has the connection to the team?
Someone in touch with DEK?
He is the tech guru.

I have passed on those details from a PM sent to me.
The info was given in a very clear way, but I'm not certain if it's been acted upon or not.
I'll try to find my email and give a little nudge.
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Profile Grant (SSSF)

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Message 105277 - Posted: 28 Feb 2022, 6:27:51 UTC - in response to Message 105268.  

But is the queue shown on the page the real queue?
Yes.


I would love to see the breakdown by task type vs some number.
Computing, Server status, Tasks by application. Unsent numbers.

But as far as the main page Total queued jobs is concerned, you just have to remember roughly what that number was before any Rosetta 4.20 are sent out to have an idea of just how many Rosetta 4.20 Tasks there are queued up to go out (when there are some to actually go out).
Grant
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Message 105279 - Posted: 28 Feb 2022, 8:29:39 UTC - in response to Message 105275.  

I have passed on those details from a PM sent to me.
The info was given in a very clear way, but I'm not certain if it's been acted upon or not.
I'll try to find my email and give a little nudge.


Well done. My little help: i wrote a message about "multiattach" on IPD, R@H, RosettaCommons twitter accounts.
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Message 105289 - Posted: 28 Feb 2022, 14:33:42 UTC - in response to Message 105279.  

I have passed on those details from a PM sent to me.
The info was given in a very clear way, but I'm not certain if it's been acted upon or not.
I'll try to find my email and give a little nudge.

Well done. My little help: I wrote a message about "multiattach" on IPD, R@H, RosettaCommons twitter accounts.

I would've sent the message of 4th February, having been sent it on 3rd Feb...
...it's not looking good, is it.
All my VB tasks are failing at the download stage atm. I'm running nothing at all for anyone :(
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Message boards : Number crunching : Problems and Technical Issues with Rosetta@home



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