Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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EHM-1 Send message Joined: 21 Mar 20 Posts: 23 Credit: 183,782 RAC: 0 |
What's easiest is to set Rosetta at say 50%, WCG at 25% and some orther project at 25% andlet Boinc figure it out,which it will do over time.Just besure to keep your cache sizes small so you don't run into deadline problems. With Rosetta's 3 day deadline if you have 3 days of work NO other projects will crunch because their deadline will be further out than 3 days. Where are these resource share settings hidden? Eric system: up-to-date Windows 10, Intel quad-core 3.6 GHz processor, 8 GB RAM |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
Apart from laptops, I've never known a CPU overheat, even on stock fans. I didn't like to say... When I first began overclocking, but before I began to take cooling seriously, I took my PC to a repair shop only to be shown the sockets I had literally melted. And over a few processors in this machine, I've blown two other motherboards. But apart from that, never... |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1734 Credit: 18,532,940 RAC: 17,945 |
I was trying to get the six Rosetta tasks completed by their 2 July deadline, but that didn't work out. Today I had 13 download failures and one upload failure and they're all gone. Rosetta is trying to download 6 more, but they are taking very long and I they may fail as well. No, the problem (apart from the download issues) is that you keep fiddling with things. As long as you set things, then let BOINC do it's job then they will settle down. But if you keep suspending, unsuspending, changing when BOINC can & can't run, then there is no chance of things ever settling down. Grant Darwin NT |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1734 Credit: 18,532,940 RAC: 17,945 |
In your account, Rosetta@ home preferences, Resource share.What's easiest is to set Rosetta at say 50%, WCG at 25% and some orther project at 25% andlet Boinc figure it out,which it will do over time.Just besure to keep your cache sizes small so you don't run into deadline problems. With Rosetta's 3 day deadline if you have 3 days of work NO other projects will crunch because their deadline will be further out than 3 days.Where are these resource share settings hidden? The number there isn't a percentage. It makes up the ratio for the work to be done with the values from you other projects. And changing that, will delay even further your Resource share settings being met. Grant Darwin NT |
EHM-1 Send message Joined: 21 Mar 20 Posts: 23 Credit: 183,782 RAC: 0 |
In your account, Rosetta@ home preferences, Resource share.What's easiest is to set Rosetta at say 50%, WCG at 25% and some orther project at 25% and let Boinc figure it out,which it will do over time. Just be sure to keep your cache sizes small so you don't run into deadline problems. With Rosetta's 3 day deadline if you have 3 days of work NO other projects will crunch because their deadline will be further out than 3 days.Where are these resource share settings hidden? Thanks, Grant. I've always just used the local preferences in BOINC. I now see what I presume is the default setting of 100 in my Rosetta prefs. But no corresponding setting in WCG (my one other project). No matter as I'm planning to continue sitting back per your suggestion and watch how BOINC balances the two projects. It piques my curiosity when, as it has a couple times over the past couple days, BOINC pauses a nearly complete Rosetta unit due in less than 2 days to download and start processing a shorter-duration OpenPandemic unit that is due in five days. All shall be revealed in the fullness of time. Eric system: up-to-date Windows 10, Intel quad-core 3.6 GHz processor, 8 GB RAM |
robertmiles Send message Joined: 16 Jun 08 Posts: 1234 Credit: 14,338,560 RAC: 826 |
[snip] Thanks, Grant. I've always just used the local preferences in BOINC. I now see what I presume is the default setting of 100 in my Rosetta prefs. But no corresponding setting in WCG (my one other project). No matter as I'm planning to continue sitting back per your suggestion and watch how BOINC balances the two projects. It piques my curiosity when, as it has a couple times over the past couple days, BOINC pauses a nearly complete Rosetta unit due in less than 2 days to download and start processing a shorter-duration OpenPandemic unit that is due in five days. All shall be revealed in the fullness of time. WCG places that setting under Device Profiles. Once you select which profile to edit, you may need to select Custom Profile, then scroll down to the bottom of the page to see where you can set it, labelled Project weight. |
EHM-1 Send message Joined: 21 Mar 20 Posts: 23 Credit: 183,782 RAC: 0 |
Thanks, Grant. I've always just used the local preferences in BOINC. I now see what I presume is the default setting of 100 in my Rosetta prefs. But no corresponding setting in WCG (my one other project). No matter as I'm planning to continue sitting back per your suggestion and watch how BOINC balances the two projects. It piques my curiosity when, as it has a couple times over the past couple days, BOINC pauses a nearly complete Rosetta unit due in less than 2 days to download and start processing a shorter-duration OpenPandemic unit that is due in five days. All shall be revealed in the fullness of time. Thanks, Robert. I feel a bit silly having missed Device Manager. Now I see under the custom option that it's set to 60% max. Tempted to adjust that now, but restraining myself for the time being. Eric system: up-to-date Windows 10, Intel quad-core 3.6 GHz processor, 8 GB RAM |
mikey Send message Joined: 5 Jan 06 Posts: 1895 Credit: 9,217,610 RAC: 822 |
Thanks, Grant. I've always just used the local preferences in BOINC. I now see what I presume is the default setting of 100 in my Rosetta prefs. But no corresponding setting in WCG (my one other project). No matter as I'm planning to continue sitting back per your suggestion and watch how BOINC balances the two projects. It piques my curiosity when, as it has a couple times over the past couple days, BOINC pauses a nearly complete Rosetta unit due in less than 2 days to download and start processing a shorter-duration OpenPandemic unit that is due in five days. All shall be revealed in the fullness of time. Thanks, Robert. I feel a bit silly having missed Device Manager. Now I see under the custom option that it's set to 60% max. Tempted to adjust that now, but restraining myself for the time being. Eric You can see what the setting is set to right now in the Boinc Manager under the Projects tab, it's one of the colums. |
Keith Myers Send message Joined: 29 Mar 20 Posts: 97 Credit: 332,619 RAC: 10 |
Another knob to twist is a setting in the cc_config.xml file. It shortens the averaging period of your projects credit accumulation in BOINC's attempt to balance credit weighting. <rec_half_life_days>1.000000</rec_half_life_days> is the value I use. REC stands for Recent Estimated Credit. The client default is ten days and that means it takes a solid two weeks of constant production before the credit scales balance between all your projects. And what that means is that it takes that long before the resource share ratio between all your projects takes at least two weeks to stabilize. You still have to deal with the differences in project work deadlines if there is a great disparity from one to the others. By shortening the balance averaging period to a single day, projects play nicely with each other . . . . mostly. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1234 Credit: 14,338,560 RAC: 826 |
Recently, I've been stepping down my target time from 22 hours to 8 hours. Now that it's at 8 hours, I'm getting more tasks that have COVID in their names. This COULD mean that the project scientists want their COVID-19 work returned fast, even if less time is spent on it. Could those who have been experimenting with target times below 8 hours mention how those times affect how often you get COVID-19 tasks? Also, I've noticed that the initial value of time remaining seems now seems to be about 8 hours, regardless of what target time you have set. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1734 Credit: 18,532,940 RAC: 17,945 |
Recently, I've been stepping down my target time from 22 hours to 8 hours. Now that it's at 8 hours, I'm getting more tasks that have COVID in their names. This COULD mean that the project scientists want their COVID-19 work returned fast, even if less time is spent on it.Or just the fact you are doing more Tasks, so there is a a greater chance of getting a particular type of Task if it is available at the time as you are requesting work more often. Also, I've noticed that the initial value of time remaining seems now seems to be about 8 hours, regardless of what target time you have set.If that is the case, then there is a problem with the Projects revised Estimated deadline mechanism. It should be based on the users Target CPU time setting, not the project's default Target CPU time setting. Grant Darwin NT |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 828 |
I've noticed the same: Tasks are arriving with an 8 hour estimated completion time. Setting is at 12 hours. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1234 Credit: 14,338,560 RAC: 826 |
Recently, I've been stepping down my target time from 22 hours to 8 hours. Now that it's at 8 hours, I'm getting more tasks that have COVID in their names. This COULD mean that the project scientists want their COVID-19 work returned fast, even if less time is spent on it.Or just the fact you are doing more Tasks, so there is a a greater chance of getting a particular type of Task if it is available at the time as you are requesting work more often. I'm seeing a higher percentage of the tasks on my computer at any one time having COVID in their names. That will indirectly mean more total tasks with COVID in their names, but that's not the point. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
In your account, Rosetta@ home preferences, Resource share.What's easiest is to set Rosetta at say 50%, WCG at 25% and some orther project at 25% andlet Boinc figure it out,which it will do over time.Just besure to keep your cache sizes small so you don't run into deadline problems. With Rosetta's 3 day deadline if you have 3 days of work NO other projects will crunch because their deadline will be further out than 3 days.Where are these resource share settings hidden? Yes, it isn't a %age. I've seen someone's now pointed out where the setting is at WCG, but I could never find it before, so I just increased Rosetta to 2900. Amounts to the same thing |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
I've noticed the same: Tasks are arriving with an 8 hour estimated completion time. Definitely, yes. During the last outage I increased my runtimes to 12hrs to eke my last few out, and they ran for 12hrs, but when new tasks came through, the unstarted ones still showed 8hrs. I've reduced my runtimes back to 8hrs. Boinc has enough trouble with scheduling without me or Rosetta making it worse. |
Stevie G Send message Joined: 15 Dec 18 Posts: 108 Credit: 866,895 RAC: 389 |
[quote] 8Gb RAM ought to be plenty for a 2-core processor. Have you looked at the previous advice in this thread and compared to your own settings (even though the advice was for a different machine)? There should be plenty for you to consider. Boinc <ought> to be able to give your other projects enough time to complete before their deadlines without you having to suspend them. The longer you can run without interfering, the better Boinc will be able to decide for you.[quote] For some reason, the computer shut down and was unresponsive for 48 hours. No action from the power button, hard drive, etc. Nada, nichts, zip. Power cable was OK, I don't think there's an inline fuse, so I dunno. There's a reset button on the power supply, but I didn't mess with that and the button is not popped out. Overheat? Usually, that just results in a restart. To be safe, I just vacuumed out all the accumulated cat hair and dust. We had some thunderstorms here last night, so maybe there was a power interruption. But nothing else in the house was affected and this machine is on a UPS backup, which did not register any action. A deep mystery But when I just now turned it et Voila!! It awoke from its coma. Which is how I'm writing to you at this moment.{:>) No explanation for that, but I'll take it. However, I've been out of business for more than two days, with deadlines rapidly approaching. So I will take your suggestion under advisement and scrutinize my settings and preferences. Thanks again. SGaber |
robertmiles Send message Joined: 16 Jun 08 Posts: 1234 Credit: 14,338,560 RAC: 826 |
[snip] For some reason, the computer shut down and was unresponsive for 48 hours. No action from the power button, hard drive, etc. Nada, nichts, zip. The shutdown is typical after a momentary loss of power. The UPS may have let its battery or batteries run too low. For example, if its rating was too low for your computer. If so, it would eventually recharge it or them after long enough with the computer using no power. You may have needed to unplug it to keep it from being confused about whether it was still running. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
8Gb RAM ought to be plenty for a 2-core processor. That's not a great sign. It's quite an old PC and must have done a lot of work in its time. The best thing you've done is vacuum it out, because it sounds heat-related to me and you'll have helped it run cooler by getting rid of the junk, which will extend its remaining life. I'm actually in much the same situation myself and considering what my next PC should be within my budget. |
justsomeguy Send message Joined: 24 May 17 Posts: 1 Credit: 375,643 RAC: 0 |
Recently, I started seeing a lot of jobs completing with a status of "aborted by project". They were completed prior to the deadline, but it doesn't appear that I get any credit for them either. Any ideas/thoughts on this? |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 828 |
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=1092259599 Both tasks errored out after just a few seconds. Slightly different error codes but the same "upload failure": </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>TFSCAFFOLD0001_6_SAVE_ALL_OUT_IGNORE_THE_REST_0ub6wd0j_953357_1_1_r1180454695_0</file_name> <error_code>-240(stat() failed)</error_code> </file_xfer_error> </message> ]]> </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>TFSCAFFOLD0001_6_SAVE_ALL_OUT_IGNORE_THE_REST_0ub6wd0j_953357_1_0_r1298488601_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]> EDIT: Got another FSCAFFOLD0001 WU, also errored after just a few seconds. Bad batch? https://boinc.bakerlab.org/rosetta/result.php?resultid=1217236062 </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>TFSCAFFOLD0001_2_SAVE_ALL_OUT_IGNORE_THE_REST_1xl5lk3f_953353_2_0_r1523244009_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> </message> ]]> |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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