Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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Sid Celery Send message Joined: 11 Feb 08 Posts: 2059 Credit: 40,463,815 RAC: 2,908 ![]() |
Sid Celery wrote:I'm not getting that warning here I normally have the same options set as you, Peter, and got other errors but not anything about Peer certificates etc But using Brian's setting, the problem was revealed. And using Toby's replacement crt file from the other thread and copying it across to the Boinc directory worked. Upload errors solved, downloads solved too - thank you to everyone who investigated. As someone else asked, now how does this get solved for the 99% of people who don't read a very specific forum thread? If people can't automatically upload or download until it's fixed, how does the updated file get pushed out to them? ![]() ![]() |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
I also used Toby's replacement crt file from the other thread. It worked, and I didn't even have to shut down BOINC to make the change, I suspect that the fix for the 99% who don't read a relevant thread will have to be a new version of BOINC that include the new crt file instead of the old one. No other changes are essential, but it would be nice if it also modifies the way this file is used so that instead of failing at an expired entry, it checks the rest of the file to see if there's a replacement entry that isn't expired yet. |
IBM01902 Send message Joined: 23 Mar 20 Posts: 3 Credit: 43,044 RAC: 0 |
I've seen tasks crash or more frustrating, get through hours of processing and just start over from 0 in the morning. This particular project doesn't seem to handle checkpointing well, at least with me and my low memory, older processors, any brand. Anything I've got with an AMD processor, also older, I've surrendered and put them on World Community Grid work. At this point a few older Intel machines , I start them Saturday morning and let them run for the weekend days to try and get Rosetta a few runs, but this project just doesn't seem to be weak computer friendly. This project likes short deadlines and without checkpointing more frequently, mine can't do much during the week. I will say I haven't bothered the project team for help. I just figure if I can't figure it out, I know where they can be useful. I'm hoping you get a good answer I can use :) |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
I've seen tasks crash or more frustrating, get through hours of processing and just start over from 0 in the morning. How much memory do each of those older computers have? 2 GB per CPU core is enough to run some of the Rosetta@Home tasks, but not all of them. You have those computers set to be hidden, so I can't check rather than ask you. Under Your account, Computing preferences, you can adjust the fraction of the computer's memory BOINC is allowed to use. You can also adjust how often the tasks are allowed to ask to write a checkpoint (if they are at a point where a checkpoint will be useful); you may have this set too high. Of course, it is also possible that the Rosetta tasks have too few places where a checkpoint would be useful. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2059 Credit: 40,463,815 RAC: 2,908 ![]() |
I've seen tasks crash or more frustrating, get through hours of processing and just start over from 0 in the morning. I'm pretty sure we can't ask a task to checkpoint - we can only ask for tasks not to checkpoint too often. Checkpointing certainly has been an issue in the past, though in the most recent program version it's also certainly been improved. I'm under the impression (but may be wrong) that when RAM is tight or short, restarting at zero happens a lot more often. It's made worse by the significant increase in RAM demands of tasks since CV19 became a priority. I'm not sure anything can be done about that in order to return meaningful results. Certain types of tasks don't need high RAM, while others definitely do, so it's right to say this project is now very demanding and unforgiving of PCs that can no longer be seen as adequate in the modern day ![]() ![]() |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,524 RAC: 2,789 ![]() |
I've seen tasks crash or more frustrating, get through hours of processing and just start over from 0 in the morning. The worst machine I have is an old Acer laptop I got from freecycle in non-working order (busted hard disk, dodgy charger connection). Quad core Intel i3 M350 CPU, with 8GB RAM (I was given it with 3GB! Totally unusable for anything, the board won't take more than 8 though). 4 Rosettas fills the RAM up. So I set Boinc to use 80% of RAM, and limited in the app config of Rosetta to only run 3 at once, allowing the other core to get a Universe task which are tiny in RAM. It's quite happy with pausing and resuming tasks. You could: Limit how many Rosettas run at once in app config. Limit Boinc's total RAM usage. If it's a computer that's not turned off much, set the "change between applications" to a very high number (it will accept 100000 minutes), so it doesn't pause work units to do others, everything runs to completion in one go. ![]() |
Jim Martin Send message Joined: 9 Oct 05 Posts: 23 Credit: 1,372,336 RAC: 203 |
Robert -- I tried to delete the certificates, after turning off BOINC, but was unsuccessful. Will waiting for BOINC people to address this issue 'be better? No uploading of wu's. It seems it's a BOINC problem, to fix, and not mine (one of 99%). Thanks, for your efforts, however, on ca-bundle.crt ps, I have a Dell E7240, with Windows 7. No problems, until now (Have run rosetta@home, since 2005.) |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
Jim - see here: https://boinc.bakerlab.org/rosetta/forum_thread.php?id=8452&postid=96958#96958 very easy to to, you don't even have to shut down BOINC for replacing the file in the BOINC folder. |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
Robert -- I tried to delete the certificates, after turning off BOINC, but was unsuccessful. Will waiting for BOINC people to address this issue I finally downloaded the updated ca-bundle.crt file, renamed the old one, and then copied the updated one into the directory that held the old one. I don't know how to edit that file either. I've asked the group that maintains BOINC to consider a new version of BOINC, with that file updated, to handle the users who can't deal with updating just the certificates file. |
Jim Martin Send message Joined: 9 Oct 05 Posts: 23 Credit: 1,372,336 RAC: 203 |
Erich -- Thanks, for the info., leading to OneDrive. I installed it, and am now waiting for the uploads It appears there are a lot, ahead of me. Cheers, ps, I installed, w/o (trying) to delete the previous certificate dates. Assume that was ok. |
Patrick Meyer Send message Joined: 21 May 20 Posts: 2 Credit: 1,201,075 RAC: 0 |
i have been have trouble uploading working units i have about 20 that will not upload |
Brian Nixon Send message Joined: 12 Apr 20 Posts: 293 Credit: 8,432,366 RAC: 0 |
Patrick Meyer wrote: i have been have trouble uploading working units i have about 20 that will not upload This is a known issue that started yesterday. Please read this thread: Peer certificate cannot be authenticated with given CA certificates |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
ps, I installed, w/o (trying) to delete the previous certificate dates. Assume that was ok.you were not asked whether the exesting file with same name should be replaced? This normal Windiws procedure. Did you get new Rosetta tasks downloaded okay? |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
I've asked the group that maintains BOINC to consider a new version of BOINC, with that file updated, to handle the users who can't deal with updating just the certificates file.any reaction from their side so far? |
Brian Nixon Send message Joined: 12 Apr 20 Posts: 293 Credit: 8,432,366 RAC: 0 |
Erich56 wrote: robertmiles wrote:I've asked the group that maintains BOINC to consider a new version of BOINC The issue is being discussed in the BOINC forums: Peer certificate cannot be authenticated with given CA certificates. And there’s a GitHub issue open against the client: Client: security certificate expired (#3789). That’s marked as Priority: Blocker, which should get the devs’ attention… |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
The issue is being discussed in the BOINC forums: Peer certificate cannot be authenticated with given CA certificates. ah, thanks for the information :-) |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 477 ![]() |
I've asked the group that maintains BOINC to consider a new version of BOINC, with that file updated, to handle the users who can't deal with updating just the certificates file.any reaction from their side so far? Not yet. |
Jim Martin Send message Joined: 9 Oct 05 Posts: 23 Credit: 1,372,336 RAC: 203 |
I'll re-allow more rosetta@home tasks. As for knowledge of normal Microsoft procedures, I don't feel I should have to know all that, to run Baker Lab wu's. After all, "You don't have to be a Scientist to do Science". Well, I'm not a software/IT engineer, either. So, I rely on the experts to make it a simple op. This problem should have never had to be brought to our attention. A fix, before a problem. |
IBM01902 Send message Joined: 23 Mar 20 Posts: 3 Credit: 43,044 RAC: 0 |
Your worst has 4x more memory than some of mine and the processors are too old too. I don't even think they support PAE and it's getting harder to find a Linux that will support them. I agree there's not enough memory for Rosetta as I've tried limiting the number of consecutive tasks and moving all the other params to free up what little ram they have. Off to WCG with those old laptops and then eventually admit their just room heaters. |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,524 RAC: 2,789 ![]() |
Your worst has 4x more memory than some of mine and the processors are too old too. I don't even think they support PAE and it's getting harder to find a Linux that will support them. I agree there's not enough memory for Rosetta as I've tried limiting the number of consecutive tasks and moving all the other params to free up what little ram they have. Cram as much RAM in the board as it will take (old memory is dirt cheap on Ebay), then run whatever it will run. I select different projects (or even sub-projects) depending on what the computer is capable of. At the moment in the piping hot weather in Scotland, I've got an air conditioner running! Probably competing against the computers. And no I can't open the windows, I have parrots flying around the house. ![]() |
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
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