Problems and Technical Issues with Rosetta@home

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rholliday
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Joined: 24 Aug 07
Posts: 1
Credit: 3,534,413
RAC: 40
Message 96396 - Posted: 12 May 2020, 15:16:29 UTC
Last modified: 12 May 2020, 15:44:35 UTC

Not sure if this is the correct place for this, but I just noticed some work units starting with 8CHARACTER_UNIQUENAME instead of a project name or an actual 8 character unique identifier. Is this potentially a problem? They do appear to have unique identifiers later, albeit after the ignore flag.
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3id7ts5f_928224_2
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_1gd4cn8l_927782_2
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4sl0rv2n_928224_2
ID: 96396 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Sven

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Message 96399 - Posted: 12 May 2020, 16:12:04 UTC

Hi all,

I just found an old outsourced computer which would work pretty well just for crunching Rosetta tasks.
Unfortunately the computation stopps after some seconds with "computation error".

Does anyone have an idea, where the problem could be? See the event log below:


12/05/2020 13:41:12 | | cc_config.xml not found - using defaults
12/05/2020 13:41:12 | | Starting BOINC client version 7.14.2 for windows_intelx86
12/05/2020 13:41:12 | | log flags: file_xfer, sched_ops, task
12/05/2020 13:41:12 | | Libraries: libcurl/7.47.1 OpenSSL/1.0.2g zlib/1.2.8
12/05/2020 13:41:12 | | Data directory: C:Programmeboinc
12/05/2020 13:41:12 | | Running under account Sven
12/05/2020 13:41:12 | | No usable GPUs found
12/05/2020 13:41:12 | | Creating new client state file
12/05/2020 13:41:12 | | Host name: viperle
12/05/2020 13:41:12 | | Processor: 4 GenuineIntel Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz [Family 6 Model 15 Stepping 11]
12/05/2020 13:41:12 | | Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss htt tm pni ssse3 cx16 nx lm vmx tm2 pbe
12/05/2020 13:41:12 | | OS: Microsoft Windows XP: Professional x86 Edition, Service Pack 3, (05.01.2600.00)
12/05/2020 13:41:12 | | Memory: 3.25 GB physical, 5.09 GB virtual
12/05/2020 13:41:12 | | Disk: 146.48 GB total, 116.06 GB free
12/05/2020 13:41:12 | | Local time is UTC +2 hours
12/05/2020 13:41:12 | | Last benchmark was 18394 days 11:41:12 ago
12/05/2020 13:41:17 | | No general preferences found - using defaults
12/05/2020 13:41:17 | | Preferences:
12/05/2020 13:41:17 | | max memory usage when active: 1663.49 MB
12/05/2020 13:41:17 | | max memory usage when idle: 2994.28 MB
12/05/2020 13:41:17 | | max disk usage: 115.97 GB
12/05/2020 13:41:17 | | don't use GPU while active
12/05/2020 13:41:17 | | suspend work if non-BOINC CPU load exceeds 25%
12/05/2020 13:41:17 | | (to change preferences, visit a project web site or select Preferences in the Manager)
12/05/2020 13:41:17 | | Setting up project and slot directories
12/05/2020 13:41:17 | | Checking active tasks
12/05/2020 13:41:17 | | Setting up GUI RPC socket
12/05/2020 13:41:17 | | Checking presence of 0 project files
12/05/2020 13:41:17 | | This computer is not attached to any projects
12/05/2020 13:41:26 | | Fetching configuration file from https://boinc.bakerlab.org/rosetta/get_project_config.php
12/05/2020 13:41:45 | | Running CPU benchmarks
12/05/2020 13:41:45 | | Suspending computation - CPU benchmarks in progress
12/05/2020 13:42:16 | | Benchmark results:
12/05/2020 13:42:16 | | Number of CPUs: 4
12/05/2020 13:42:16 | | 2341 floating point MIPS (Whetstone) per CPU
12/05/2020 13:42:16 | | 5245 integer MIPS (Dhrystone) per CPU
12/05/2020 13:42:17 | | Resuming computation
12/05/2020 13:42:19 | Rosetta@home | Master file download succeeded
12/05/2020 13:42:24 | Rosetta@home | Sending scheduler request: Project initialization.
12/05/2020 13:42:24 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 13:42:26 | Rosetta@home | Scheduler request completed: got 1 new tasks
12/05/2020 13:42:26 | Rosetta@home | New computer location: home
12/05/2020 13:42:31 | | General prefs: from http://lhcathomeclassic.cern.ch/sixtrack/ (last modified 06-Mar-2015 20:46:54)
12/05/2020 13:42:31 | | Host location: none
12/05/2020 13:42:31 | | General prefs: using your defaults
12/05/2020 13:42:31 | | Preferences:
12/05/2020 13:42:31 | | max memory usage when active: 1663.49 MB
12/05/2020 13:42:31 | | max memory usage when idle: 2994.28 MB
12/05/2020 13:42:31 | | max disk usage: 73.24 GB
12/05/2020 13:42:31 | | Number of usable CPUs has changed from 4 to 2.
12/05/2020 13:42:31 | | max CPUs used: 2
12/05/2020 13:42:31 | | don't use GPU while active
12/05/2020 13:42:31 | | suspend work if non-BOINC CPU load exceeds 25%
12/05/2020 13:42:31 | | (to change preferences, visit a project web site or select Preferences in the Manager)
12/05/2020 13:42:32 | Rosetta@home | Started download of rosetta_4.21_windows_intelx86.exe
12/05/2020 13:42:32 | Rosetta@home | Started download of rosetta_graphics_4.21_windows_intelx86.exe
12/05/2020 13:43:01 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 13:43:01 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 13:43:03 | Rosetta@home | Scheduler request completed: got 1 new tasks
12/05/2020 13:44:14 | | General prefs: from http://lhcathomeclassic.cern.ch/sixtrack/ (last modified 06-Mar-2015 20:46:54)
12/05/2020 13:44:14 | | Host location: none
12/05/2020 13:44:14 | | General prefs: using your defaults
12/05/2020 13:44:14 | | Reading preferences override file
12/05/2020 13:44:14 | | Preferences:
12/05/2020 13:44:14 | | max memory usage when active: 1663.49 MB
12/05/2020 13:44:14 | | max memory usage when idle: 2994.28 MB
12/05/2020 13:44:14 | | max disk usage: 73.24 GB
12/05/2020 13:44:14 | | max CPUs used: 2
12/05/2020 13:44:14 | | suspend work if non-BOINC CPU load exceeds 25%
12/05/2020 13:44:14 | | (to change preferences, visit a project web site or select Preferences in the Manager)
12/05/2020 13:45:23 | Rosetta@home | Finished download of rosetta_graphics_4.21_windows_intelx86.exe
12/05/2020 13:45:23 | Rosetta@home | Started download of database_357d5d93529_n_methyl.zip
12/05/2020 13:45:29 | Rosetta@home | Finished download of rosetta_4.21_windows_intelx86.exe
12/05/2020 13:45:29 | Rosetta@home | Started download of LiberationSans-Regular.ttf
12/05/2020 13:45:31 | Rosetta@home | Finished download of LiberationSans-Regular.ttf
12/05/2020 13:45:31 | Rosetta@home | Started download of flags_covid_groove2
12/05/2020 13:45:32 | Rosetta@home | Finished download of flags_covid_groove2
12/05/2020 13:45:32 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.zip
12/05/2020 13:45:38 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.zip
12/05/2020 13:45:38 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.flags
12/05/2020 13:45:39 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.flags
12/05/2020 13:45:39 | Rosetta@home | Started download of r3x_0904_data.zip
12/05/2020 13:45:40 | Rosetta@home | Finished download of r3x_0904_data.zip
12/05/2020 14:07:32 | Rosetta@home | Finished download of database_357d5d93529_n_methyl.zip
12/05/2020 14:15:53 | Rosetta@home | Starting task Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0
12/05/2020 14:16:08 | Rosetta@home | Computation for task Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0 finished
12/05/2020 14:16:08 | Rosetta@home | Output file Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0_r924213539_0 for task Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0 absent
12/05/2020 14:16:12 | Rosetta@home | Starting task r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0
12/05/2020 14:16:16 | Rosetta@home | Computation for task r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0 finished
12/05/2020 14:16:16 | Rosetta@home | Output file r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0_r1563406117_0 for task r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0 absent
12/05/2020 14:16:34 | Rosetta@home | update requested by user
12/05/2020 14:16:39 | Rosetta@home | Sending scheduler request: Requested by user.
12/05/2020 14:16:39 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:16:39 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:16:42 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:16:44 | Rosetta@home | Started download of flags_dummy
12/05/2020 14:16:44 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.zip
12/05/2020 14:16:46 | Rosetta@home | Finished download of flags_dummy
12/05/2020 14:16:46 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.flags
12/05/2020 14:16:47 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.flags
12/05/2020 14:16:47 | Rosetta@home | Started download of fp200511_C2_pair139_X_fnr_9_193_fragments_fold_data.zip
12/05/2020 14:16:55 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.zip
12/05/2020 14:17:06 | Rosetta@home | Finished download of fp200511_C2_pair139_X_fnr_9_193_fragments_fold_data.zip
12/05/2020 14:22:42 | Rosetta@home | Starting task fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0
12/05/2020 14:22:50 | Rosetta@home | Computation for task fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0 finished
12/05/2020 14:22:50 | Rosetta@home | Output file fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0_r1926040998_0 for task fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0 absent
12/05/2020 14:22:53 | Rosetta@home | Starting task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0
12/05/2020 14:23:00 | Rosetta@home | Computation for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0 finished
12/05/2020 14:23:00 | Rosetta@home | Output file 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0_r336126669_0 for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0 absent
12/05/2020 14:25:24 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:25:24 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:25:24 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:25:26 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:25:28 | Rosetta@home | Started download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.zip
12/05/2020 14:25:28 | Rosetta@home | Started download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.flags
12/05/2020 14:25:30 | Rosetta@home | Finished download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.zip
12/05/2020 14:25:30 | Rosetta@home | Finished download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.flags
12/05/2020 14:25:30 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta_FLAGS
12/05/2020 14:25:30 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta.zip
12/05/2020 14:25:33 | Rosetta@home | Starting task new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1
12/05/2020 14:25:34 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta_FLAGS
12/05/2020 14:25:34 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta.zip
12/05/2020 14:25:34 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.3mers.index.gz
12/05/2020 14:25:34 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.5mers.index.gz
12/05/2020 14:25:36 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.3mers.index.gz
12/05/2020 14:25:36 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.5mers.index.gz
12/05/2020 14:25:39 | Rosetta@home | Starting task rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1
12/05/2020 14:25:49 | Rosetta@home | Computation for task rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1 finished
12/05/2020 14:25:49 | Rosetta@home | Output file rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1_r858648371_0 for task rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1 absent
12/05/2020 14:27:49 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:27:49 | Rosetta@home | Reporting 1 completed tasks
12/05/2020 14:27:49 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:27:51 | Rosetta@home | Scheduler request completed: got 1 new tasks
12/05/2020 14:27:53 | Rosetta@home | Started download of flags_covid_groove2
12/05/2020 14:27:53 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.zip
12/05/2020 14:27:55 | Rosetta@home | Finished download of flags_covid_groove2
12/05/2020 14:27:55 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.flags
12/05/2020 14:27:56 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.flags
12/05/2020 14:28:00 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.zip
12/05/2020 14:28:48 | Rosetta@home | Computation for task new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1 finished
12/05/2020 14:28:48 | Rosetta@home | Output file new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1_r1150183738_0 for task new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1 absent
12/05/2020 14:28:51 | Rosetta@home | Starting task Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0
12/05/2020 14:28:53 | Rosetta@home | Computation for task Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0 finished
12/05/2020 14:28:53 | Rosetta@home | Output file Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0_r1359986480_0 for task Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0 absent
12/05/2020 14:31:28 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:31:28 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:31:28 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:31:31 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:31:33 | Rosetta@home | Started download of flags_dummy
12/05/2020 14:31:33 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.zip
12/05/2020 14:31:35 | Rosetta@home | Finished download of flags_dummy
12/05/2020 14:31:35 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.flags
12/05/2020 14:31:36 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.flags
12/05/2020 14:31:36 | Rosetta@home | Started download of r3x_3679_data.zip
12/05/2020 14:31:37 | Rosetta@home | Finished download of r3x_3679_data.zip
12/05/2020 14:31:40 | Rosetta@home | Starting task r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0
12/05/2020 14:31:48 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.zip
12/05/2020 14:31:50 | Rosetta@home | Starting task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0
12/05/2020 14:31:51 | Rosetta@home | Computation for task r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0 finished
12/05/2020 14:31:51 | Rosetta@home | Output file r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0_r460780872_0 for task r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0 absent
12/05/2020 14:31:59 | Rosetta@home | Computation for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0 finished
12/05/2020 14:31:59 | Rosetta@home | Output file 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0_r529209938_0 for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0 absent
12/05/2020 14:35:52 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:35:52 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:35:52 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:35:55 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:35:57 | Rosetta@home | Started download of flags_covid_groove2
12/05/2020 14:35:57 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.zip
12/05/2020 14:35:59 | Rosetta@home | Finished download of flags_covid_groove2
12/05/2020 14:35:59 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.flags
12/05/2020 14:36:00 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.flags
12/05/2020 14:36:00 | Rosetta@home | Started download of fp200511_allo2_pair125_X_fnr_8_042_fragments_fold_data.zip
12/05/2020 14:36:04 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.zip
12/05/2020 14:36:07 | Rosetta@home | Starting task Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0
12/05/2020 14:36:11 | Rosetta@home | Computation for task Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0 finished
12/05/2020 14:36:11 | Rosetta@home | Output file Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0_r1031802064_0 for task Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0 absent
12/05/2020 14:36:24 | Rosetta@home | Finished download of fp200511_allo2_pair125_X_fnr_8_042_fragments_fold_data.zip
12/05/2020 14:36:27 | Rosetta@home | Starting task fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0
12/05/2020 14:36:34 | Rosetta@home | Computation for task fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0 finished
12/05/2020 14:36:34 | Rosetta@home | Output file fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0_r585054160_0 for task fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0 absent
12/05/2020 14:36:52 | Rosetta@home | work fetch suspended by user
12/05/2020 14:38:53 | Rosetta@home | Sending scheduler request: To report completed tasks.
12/05/2020 14:38:53 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:38:53 | Rosetta@home | Not requesting tasks: "no new tasks" requested via Manager
12/05/2020 14:38:55 | Rosetta@home | Scheduler request completed
12/05/2020 18:04:27 | | Suspending computation - CPU is busy
12/05/2020 18:05:37 | | Resuming computation
12/05/2020 18:06:47 | Rosetta@home | work fetch resumed by user
12/05/2020 18:06:50 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 18:06:50 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 18:06:53 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 18:06:55 | Rosetta@home | Started download of flags
12/05/2020 18:06:55 | Rosetta@home | Started download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.zip
12/05/2020 18:06:57 | Rosetta@home | Finished download of flags
12/05/2020 18:06:57 | Rosetta@home | Started download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.flags
12/05/2020 18:06:58 | Rosetta@home | Finished download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.zip
12/05/2020 18:06:58 | Rosetta@home | Finished download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.flags
12/05/2020 18:06:58 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta_FLAGS
12/05/2020 18:06:58 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.zip
12/05/2020 18:07:00 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta_FLAGS
12/05/2020 18:07:00 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.zip
12/05/2020 18:07:00 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.200.3mers.index.gz
12/05/2020 18:07:00 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.200.10mers.index.gz
12/05/2020 18:07:01 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.200.3mers.index.gz
12/05/2020 18:07:01 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.200.10mers.index.gz
12/05/2020 18:07:01 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.200.6mers.index.gz
12/05/2020 18:07:02 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.200.6mers.index.gz
12/05/2020 18:07:05 | Rosetta@home | Starting task rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0
12/05/2020 18:07:17 | Rosetta@home | Computation for task rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0 finished
12/05/2020 18:07:17 | Rosetta@home | Output file rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0_r1393946342_0 for task rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0 absent
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Profile robertmiles

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Message 96416 - Posted: 13 May 2020, 0:21:13 UTC - in response to Message 96399.  

Hi all,

I just found an old outsourced computer which would work pretty well just for crunching Rosetta tasks.
Unfortunately the computation stopps after some seconds with "computation error".

Does anyone have an idea, where the problem could be? See the event log below:

[snip]

You're looking at the wrong log file to see much about THIS problem.

To see the one with more information for this problem:

If you're using the simple view of the BOINC Manager, find View near the top line, click on it, then click on Advanced View.

Click on Projects in one of the top lines, then Rosetta@home, then Your tasks.

In the Status column, find one of the failed tasks. Ignore those shown as In progress - they don't have the other log file yet. Ignore those shown as Completed and validated for now unless you want to see one without errors for comparison purposes.

When you find one, click on the number in this line, but in the Task column. This gives the log file specific to that task.

Scroll down as needed. In this case, look at the line starting with unzip, which shows the error triggering all other errors for this task,

I've looked at this file for some of your failed tasks, and have thought of three possibilities:

1. The task was built improperly, and the list of files it needs left out one or two of the zip files. It may have assumed, incorrectly, that some previous task had downloaded it or them.

2. Your antivirus program hid one or both of those files. You might check the log file of your antivirus program, if it has one.

3. These tasks used version v4.21 of the Rosetta application, which I have not seen mentioned before. That version might have the wrong builtin names for files to send to unzip.

For 1, about all you can do is wait for more tasks that fix this problem.

For 2, you might have to tell your antivirus program not to scan the directories for BOINC.

For 3, you might watch the forums for mentions of that version, to see if similar problems are reported by others.

On another subject, I also looked at the specs for that computer, which runs Windows XP. You might look for threads on whether the current versions of Rosetta are compatible with Windows XP.

The current tasks take up to 2 GB of memory each and sometimes more, so you may have problems with the tasks running out of memory once you can get them to run longer, if you allow one task each for the 4 virtual CPU cores on that computer. You may have to limit it to only one task at a time. That computer has only 4 GB of main memory, and some of it is reserved for the Windows operating system.
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Profile robertmiles

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Message 96417 - Posted: 13 May 2020, 0:28:05 UTC - in response to Message 96396.  

Not sure if this is the correct place for this, but I just noticed some work units starting with 8CHARACTER_UNIQUENAME instead of a project name or an actual 8 character unique identifier. Is this potentially a problem? They do appear to have unique identifiers later, albeit after the ignore flag.
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3id7ts5f_928224_2
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_1gd4cn8l_927782_2
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4sl0rv2n_928224_2

Probably not a problem as long as only ONE batch has names starting that way. Likely to cause confusion in the server database if there is more than one such batch, and therefore there are often two or more workunits with the same full name
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MarkJ

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Message 96426 - Posted: 13 May 2020, 6:15:09 UTC - in response to Message 96417.  

8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3id7ts5f_928224_2
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_1gd4cn8l_927782_2
8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4sl0rv2n_928224_2

Probably not a problem as long as only ONE batch has names starting that way. Likely to cause confusion in the server database if there is more than one such batch, and therefore there are often two or more workunits with the same full name

There are a bunch of "yournamehere" ones as well. Probably the person submitting them didn't know what to do when filling out the job template.
BOINC blog
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Profile Grant (SSSF)

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Message 96427 - Posted: 13 May 2020, 6:15:37 UTC - in response to Message 96399.  

Does anyone have an idea, where the problem could be? See the event log below
Some people are able to run using WInXP without problems, others are unable to get things to run on XP.
I'd suggest using a more recent OS.
I would also limit the number of cores you use to process work with- even with all the RAM available using a 64bit OS, you will still not have enough RAM to run some Tasks while using all cores- you generally need to allow 1.3GB RAM per Task to avoid out of memory issues.
Grant
Darwin NT
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Rob R

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Message 96431 - Posted: 13 May 2020, 6:51:20 UTC

In the last couple days I've noticed a number of failed tasks, they all start with 3cl in the name, here is an example.
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=1057932888
The tasks run for about 8-15 seconds then return compute error. System is a Ryzen 5 3600, 16gb ram.
Hope this helps with troubleshooting!
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Message 96433 - Posted: 13 May 2020, 7:03:02 UTC - in response to Message 96431.  
Last modified: 13 May 2020, 7:39:51 UTC

In the last couple days I've noticed a number of failed tasks, they all start with 3cl in the name, here is an example.
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=1057932888
The tasks run for about 8-15 seconds then return compute error. System is a Ryzen 5 3600, 16gb ram.
Hope this helps with troubleshooting!
Try limiting the number of cores you use to process work (or add more system RAM) - it's a memory issue.
I used to get the same errors that you are getting when i was running all 6c/12t with only 16GB of RAM, once i upgraded my system to 32GB RAM i've had no such errors since.

You generally need to allow for 1.3GB of RAM per running Task. Many Tasks use a lot lot less, quite few Tasks use a hell of a lot more. If a Task requires more RAM, it should gracefully suspend until there's enough RAM to continue, but that isn't always the case.



Edit- having said that, i just had one of those WUs do the same thing on my system, yet was processed OK on another system, and even though i've processed several others of the same type with no problems.

3cl_7aa_6lu7_modified_AVLstub_relaxed_renumbered_0074_110_extract_B_SAVE_ALL_OUT_927956_74_0

[pre]<core_client_version>7.6.33</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @3cl_7aa_6lu7_modified_AVLstub_relaxed_renumbered_0074_110_extract_B.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2443625
Using database: database_357d5d93529_n_methylminirosetta_database


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00007FF63B7D1D48

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 7.9.0


Dump Timestamp : 05/12/20 22:11:33
Install Directory : C:Program FilesBOINC
Data Directory : C:ProgramDataBOINC
Project Symstore : https://boinc.bakerlab.org/rosetta/symstore
LoadLibraryA( C:ProgramDataBOINCdbghelp.dll ): GetLastError = 126
Loaded Library : dbghelp.dll
LoadLibraryA( C:ProgramDataBOINCsymsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( C:ProgramDataBOINCsrcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( C:ProgramDataBOINCversion.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:ProgramDataBOINCslots5;C:ProgramDataBOINCprojectsboinc.bakerlab.org_rosetta;srv*C:ProgramDataBOINCprojectsboinc.bakerlab.org_rosettasymbols*http://msdl.microsoft.com/download/symbols;srv*C:ProgramDataBOINCprojectsboinc.bakerlab.org_rosettasymbols*https://boinc.bakerlab.org/rosetta/symstore


ModLoad: 0000000037c20000 00000000057ef000 C:ProgramDataBOINCprojectsboinc.bakerlab.org_rosettarosetta_4.20_windows_x86_64.exe (-exported- Symbols Loaded)
Linked PDB Filename : C:cygwin64homeboinc4.17RosettamainsourceideVisualStudiox64BoincReleaserosetta_4.20_windows_x86_64.pdb

ModLoad: 00000000f3140000 00000000001f0000 C:WINDOWSSYSTEM32ntdll.dll (6.2.18362.719) (-exported- Symbols Loaded)
Linked PDB Filename : ntdll.pdb
File Version : 10.0.18362.329 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.329

ModLoad: 00000000f1500000 00000000000b2000 C:WINDOWSSystem32KERNEL32.DLL (6.2.18362.329) (-exported- Symbols Loaded)
Linked PDB Filename : kernel32.pdb
File Version : 10.0.18362.329 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.329

ModLoad: 00000000f06e0000 00000000002a3000 C:WINDOWSSystem32KERNELBASE.dll (6.2.18362.719) (-exported- Symbols Loaded)
Linked PDB Filename : kernelbase.pdb
File Version : 10.0.18362.329 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.329

ModLoad: 00000000f18a0000 000000000006f000 C:WINDOWSSystem32WS2_32.dll (6.2.18362.387) (-exported- Symbols Loaded)
Linked PDB Filename : ws2_32.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000f1710000 0000000000120000 C:WINDOWSSystem32RPCRT4.dll (6.2.18362.628) (-exported- Symbols Loaded)
Linked PDB Filename : rpcrt4.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000f1b20000 0000000000194000 C:WINDOWSSystem32USER32.dll (6.2.18362.719) (-exported- Symbols Loaded)
Linked PDB Filename : user32.pdb
File Version : 10.0.17134.343 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.343

ModLoad: 00000000f00d0000 0000000000021000 C:WINDOWSSystem32win32u.dll (6.2.18362.719) (-exported- Symbols Loaded)
Linked PDB Filename : win32u.pdb
File Version : 10.0.18362.719 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.719

ModLoad: 00000000f28e0000 0000000000026000 C:WINDOWSSystem32GDI32.dll (6.2.18362.1) (-exported- Symbols Loaded)
Linked PDB Filename : gdi32.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000f0100000 0000000000194000 C:WINDOWSSystem32gdi32full.dll (6.2.18362.719) (-exported- Symbols Loaded)
Linked PDB Filename : gdi32full.pdb
File Version : 10.0.18362.719 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.719

ModLoad: 00000000f04f0000 000000000009e000 C:WINDOWSSystem32msvcp_win.dll (6.2.18362.387) (-exported- Symbols Loaded)
Linked PDB Filename : msvcp_win.pdb
File Version : 10.0.18362.387 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.387

ModLoad: 00000000f05e0000 00000000000fa000 C:WINDOWSSystem32ucrtbase.dll (6.2.18362.387) (-exported- Symbols Loaded)
Linked PDB Filename : ucrtbase.pdb
File Version : 10.0.18362.387 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.387

ModLoad: 00000000f15c0000 00000000000a3000 C:WINDOWSSystem32ADVAPI32.dll (6.2.18362.329) (-exported- Symbols Loaded)
Linked PDB Filename : advapi32.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000f1250000 000000000009e000 C:WINDOWSSystem32msvcrt.dll (7.0.18362.1) (-exported- Symbols Loaded)
Linked PDB Filename : msvcrt.pdb
File Version : 7.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 7.0.18362.1

ModLoad: 00000000f1670000 0000000000097000 C:WINDOWSSystem32sechost.dll (6.2.18362.693) (-exported- Symbols Loaded)
Linked PDB Filename : sechost.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000f2440000 000000000002e000 C:WINDOWSSystem32IMM32.DLL (6.2.18362.387) (-exported- Symbols Loaded)
Linked PDB Filename : imm32.pdb
File Version : 10.0.18362.387 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.387

ModLoad: 00000000f00b0000 0000000000011000 C:WINDOWSSystem32kernel.appcore.dll (6.2.18362.1) (-exported- Symbols Loaded)
Linked PDB Filename : Kernel.Appcore.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000ef060000 0000000000031000 C:WINDOWSSYSTEM32ntmarta.dll (6.2.18362.1) (-exported- Symbols Loaded)
Linked PDB Filename : ntmarta.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000e1640000 00000000001f4000 C:WINDOWSSYSTEM32dbghelp.dll (6.2.18362.1) (-exported- Symbols Loaded)
Linked PDB Filename : dbghelp.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1

ModLoad: 00000000f1110000 0000000000080000 C:WINDOWSSystem32bcryptPrimitives.dll (6.2.18362.295) (-exported- Symbols Loaded)
Linked PDB Filename : bcryptprimitives.pdb
File Version : 10.0.18362.295 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.295

ModLoad: 00000000eafb0000 000000000000a000 C:WINDOWSSYSTEM32version.dll (6.2.18362.1) (-exported- Symbols Loaded)
Linked PDB Filename : version.pdb
File Version : 10.0.18362.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.18362.1



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 5000, Write: 662, Other 13721

- I/O Transfers Counters -
Read: 14491204, Write: 9881, Other 6728

- Paged Pool Usage -
QuotaPagedPoolUsage: 317448, QuotaPeakPagedPoolUsage: 317752
QuotaNonPagedPoolUsage: 6792, QuotaPeakNonPagedPoolUsage: 7352

- Virtual Memory Usage -
VirtualSize: 83140608, PeakVirtualSize: 895655936

- Pagefile Usage -
PagefileUsage: 83140608, PeakPagefileUsage: 83140608

- Working Set Size -
WorkingSetSize: 103694336, PeakWorkingSetSize: 103698432, PageFaultCount: 25722

*** Dump of thread ID 9108 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00007FF63B7D1D48

- Registers -
rax=000000000000003a rbx=0000000060d95750 rcx=00000000617a2ac0 rdx=0000000061882bf8 rsi=000000000000000b rdi=00000000617a2ac0
r8=000000000000003a r9=0000000000000421 r10=000000003b7c6e80 r11=00000000b6545480 r12=0000000037c20000 r13=00000000b655fba0
r14=00000000b6545bc0 r15=000000000048b215 rip=000000003b7d1d48 rsp=00000000b65454f8 rbp=0000000000000000
cs=0033 ss=002b ds=002b es=002b fs=0053 gs=002b efl=00010202

- Callstack -
ChildEBP RetAddr Args to Child
b65454f0 380f831c 00000000 3b7c6d60 3b7c6e80 3b7abe78 rosetta_4.20_windows_x86_64!xmlValidateNotationDecl+0x0
b6545520 380b935d 60d95750 b65455c0 b6545d40 380a355d rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0
b6545550 3b227f10 3c110150 b655fba0 00000000 380a3265 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0
b6545580 380a39e8 b6546230 e0000000 b6545b88 b6545c10 rosetta_4.20_windows_x86_64!xmlValidateNotationDecl+0x0
b65455f0 f31e121f 00000000 b6545b70 b6546230 b6546230 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0
b6545620 f31aa289 00000001 37c20000 00000000 3d1ba32c ntdll!__chkstk+0x0
b6545d30 f31dfe8e 00000030 b6545e09 3b89a450 f317ba17 ntdll!RtlRaiseException+0x0
b65464c0 38363e2b fffffffe 65103d58 ffffffff 383718c5 ntdll!KiUserExceptionDispatcher+0x0
b6546510 38373690 3b89a3a0 65103ab0 3b89a3a0 b6546609 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0
b6546640 38489ee8 64a9d698 65479d00 65103ab0 65479d00 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0
b65471f0 38424b6c 6556ac10 f317ba17 60cd0000 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b65473f0 3842488e b65474d8 00000000 b65476c0 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6547550 38383da1 b65476c8 00000000 60d95410 b6547790 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6547910 38389f08 b6547c60 b6547c60 b6547c60 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6547f60 383884db 613cac90 b6547fc0 613bb580 613bb580 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b65480c0 382f1fb7 00000000 b65481d0 613bb580 b65483d0 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6548230 382f57a6 00000005 38095190 612dfb10 612dfb10 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0
b65482a0 382f56cc b65485a8 b6548419 b65485a8 613bb580 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0
b6548350 383bb6f5 b65485a8 b6548841 00000000 380b75e8 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0
b6548470 383ba592 00000005 b65485a8 b6548780 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6548540 383bad06 00000000 00000000 b6548e60 60cd0000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b65486e0 388171a3 b6548780 b6548e60 ffffff01 380a3e73 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b65489d0 38819d09 00000000 00000001 b6548ae0 b6548e60 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6548d60 38812f8a b6548da0 b6548e60 6459df80 613720c0 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6548dc0 38a2cc70 b6548e60 b6549588 612dfb10 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6549550 38a2c6e4 654196d0 654755c0 3d095cc0 380975a6 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b65495b0 38a3603e b65496a0 65419400 b65496c0 b6549e10 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6549d30 38a356d4 911ecceb 911ecbfb 3d007f70 38a56cb4 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6549dc0 38a3578e 00000005 b654a368 613720c0 00000001 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b6549f60 380a081d 61673820 61673820 613720c0 60d96d01 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0
b655fb90 380ab215 00000000 00000000 3cfcccf8 00000000 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0
b655fbd0 f1517bd4 00000000 00000000 00000000 00000000 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0
b655fc00 f31aced1 00000000 00000000 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0
b655fc80 00000000 00000000 00000000 00000000 00000000 ntdll!RtlUserThreadStart+0x0

*** Dump of thread ID 32764 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 6.000000, User Time: 0.000000, Wait Time: 2744734720.000000

- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000 ss=0000 ds=0000 es=0000 fs=0000 gs=0000 efl=00000000

- Callstack -
ChildEBP RetAddr Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !+0x0

*** Dump of thread ID 30812250 (state: Unknown): ***

- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 17179869184.000000, User Time: 21474836480.000000, Wait Time: 0.000000

- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000 ss=0000 ds=0000 es=0000 fs=0000 gs=0000 efl=00000000

- Callstack -
ChildEBP RetAddr Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !+0x0


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>[pre]
Grant
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Message 96434 - Posted: 13 May 2020, 7:15:51 UTC - in response to Message 96416.  
Last modified: 13 May 2020, 7:16:58 UTC

Hi all,

I just found an old outsourced computer which would work pretty well just for crunching Rosetta tasks.
Unfortunately the computation stopps after some seconds with "computation error".

Does anyone have an idea, where the problem could be? See the event log below:

[snip]

You're looking at the wrong log file to see much about THIS problem.

To see the one with more information for this problem:

If you're using the simple view of the BOINC Manager, find View near the top line, click on it, then click on Advanced View.

Click on Projects in one of the top lines, then Rosetta@home, then Your tasks.

In the Status column, find one of the failed tasks. Ignore those shown as In progress - they don't have the other log file yet. Ignore those shown as Completed and validated for now unless you want to see one without errors for comparison purposes.

When you find one, click on the number in this line, but in the Task column. This gives the log file specific to that task.

Scroll down as needed. In this case, look at the line starting with unzip, which shows the error triggering all other errors for this task,

I've looked at this file for some of your failed tasks, and have thought of three possibilities:

1. The task was built improperly, and the list of files it needs left out one or two of the zip files. It may have assumed, incorrectly, that some previous task had downloaded it or them.

2. Your antivirus program hid one or both of those files. You might check the log file of your antivirus program, if it has one.

3. These tasks used version v4.21 of the Rosetta application, which I have not seen mentioned before. That version might have the wrong builtin names for files to send to unzip.

For 1, about all you can do is wait for more tasks that fix this problem.

For 2, you might have to tell your antivirus program not to scan the directories for BOINC.

For 3, you might watch the forums for mentions of that version, to see if similar problems are reported by others.

On another subject, I also looked at the specs for that computer, which runs Windows XP. You might look for threads on whether the current versions of Rosetta are compatible with Windows XP.

The current tasks take up to 2 GB of memory each and sometimes more, so you may have problems with the tasks running out of memory once you can get them to run longer, if you allow one task each for the 4 virtual CPU cores on that computer. You may have to limit it to only one task at a time. That computer has only 4 GB of main memory, and some of it is reserved for the Windows operating system.



Here we are, one of the failed tasks with its specific log file:
Don't know where to get the minirosetta database from if it's not downloaded by Boinc itself.

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
Unzul´┐Żssige Funktion.
(0x1) - exit code 1 (0x1)</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.21_windows_intelx86.exe -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--covid_groove_design_boinc_v1_mod.xml @flags_covid_groove2 -in:file:silent Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4gv6ne9i.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4gv6ne9i.zip @Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4gv6ne9i.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3074316
Extracting in slot directory: minirosetta_database.zip
unzip: cannot find either ../../projects/boinc.bakerlab.org_rosetta/database_357d5d93529_n_methyl.zip or ../../projects/boinc.bakerlab.org_rosetta/database_357d5d93529_n_methyl.zip.zip.
Using database: minirosetta_database
Cannot find database: minirosetta_database

</stderr_txt>
]]>
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Message 96435 - Posted: 13 May 2020, 7:31:46 UTC - in response to Message 96434.  

I guess it would be worth it to try and install a parallel running Linux distribution on this machine.

Adjusting the antivirus settings didn't work at all and it seems to be generally problematic with running on Windows XP.

My lack of memory would still be unsolved.
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Message 96449 - Posted: 13 May 2020, 16:34:33 UTC

i also have lots of failed WUs.

53 just yesterday and today! Lots of them with wasted CPU-Time.
What the hell is wrong again?

All of them have error-code "139 (0x0000008B) Unknown error code" and all of them failed on my System with Ryzen 5 3600X and 32GB @ 3200Mhz (standard) of Ram.
the other system (R5 3600 (withoutX) with 32GB@ 3000Mhz (standard)) is running fine.
Both Systems are not overclocked on CPU and have XMP turned on.
No Gameboost or anything else, Fans at 100%
Temperatures are fine. Both are Watercooled in one loop with two 280mm radiators.

some examples:
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178373908
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178374184
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178329397
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178275970
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178221426
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178221294

somebody any Ideas?
its frustrating to see the wasted time without result and no points.
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Message 96453 - Posted: 13 May 2020, 17:27:57 UTC - in response to Message 96449.  
Last modified: 13 May 2020, 17:28:12 UTC

You're not the only person experiencing signal 11. Please post in the other thread: https://boinc.bakerlab.org/rosetta/forum_thread.php?id=13941
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Message 96455 - Posted: 13 May 2020, 18:29:47 UTC - in response to Message 96449.  

i also have lots of failed WUs.

53 just yesterday and today! Lots of them with wasted CPU-Time.
What the hell is wrong again?

All of them have error-code "139 (0x0000008B) Unknown error code" and all of them failed on my System with Ryzen 5 3600X and 32GB @ 3200Mhz (standard) of Ram.
the other system (R5 3600 (withoutX) with 32GB@ 3000Mhz (standard)) is running fine.
Both Systems are not overclocked on CPU and have XMP turned on.
No Gameboost or anything else, Fans at 100%
Temperatures are fine. Both are Watercooled in one loop with two 280mm radiators.

some examples:
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178373908
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178374184
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178329397
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178275970
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178221426
https://boinc.bakerlab.org/rosetta/result.php?resultid=1178221294

somebody any Ideas?
its frustrating to see the wasted time without result and no points.

Each of your examples ran under Linux, If you scroll down to the stderr output of each, you will see that each of them gave signal 11.

Under Linux, signal 11 means segmentation error - in other words, the program tried to execute something that was not marked as executable code.

Error code 139 came from a higher level, which did not know what to do about signal 11.

This means that there's an error somewhere in the Linux version of Rosetta 4.20. You can't fix that. You can only wait for tasks that either use a corrected version of the program, or have the input files adjusted so that they don't try to use the part of the program that triggers the error.
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Message 96459 - Posted: 13 May 2020, 20:27:01 UTC - in response to Message 96455.  


Each of your examples ran under Linux, If you scroll down to the stderr output of each, you will see that each of them gave signal 11.

Under Linux, signal 11 means segmentation error - in other words, the program tried to execute something that was not marked as executable code.

Error code 139 came from a higher level, which did not know what to do about signal 11.

This means that there's an error somewhere in the Linux version of Rosetta 4.20. You can't fix that. You can only wait for tasks that either use a corrected version of the program, or have the input files adjusted so that they don't try to use the part of the program that triggers the error.



thank you.

any ideas for solving this problem? maybe reinstall ubuntu or something? yesterday i did the update to 20.04. think thats the problem.
but both systems are identical(software). both have same version and i did same update on both.
the first system is runing into this problem, the secound is forking fine.
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Message 96466 - Posted: 13 May 2020, 22:50:08 UTC - in response to Message 96433.  

In the last couple days I've noticed a number of failed tasks, they all start with 3cl in the name, here is an example.
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=1057932888
The tasks run for about 8-15 seconds then return compute error. System is a Ryzen 5 3600, 16gb ram.
Hope this helps with troubleshooting!
Try limiting the number of cores you use to process work (or add more system RAM) - it's a memory issue.
I used to get the same errors that you are getting when i was running all 6c/12t with only 16GB of RAM, once i upgraded my system to 32GB RAM i've had no such errors since.

You generally need to allow for 1.3GB of RAM per running Task. Many Tasks use a lot lot less, quite few Tasks use a hell of a lot more. If a Task requires more RAM, it should gracefully suspend until there's enough RAM to continue, but that isn't always the case.

Edit- having said that, i just had one of those WUs do the same thing on my system, yet was processed OK on another system, and even though i've processed several others of the same type with no problems.


Yea, my settings were set to max 50% of ram. I upped it to 75% but I don't think that's the problem. At the time it failed their was only a total of 6.5G ram in use and the 50% limit would have allowed 8GB ram. The absolute limit is set to 10G. Several of the 3cl* tasks have completed just fine it seams to just be a select few that have some kind of problem.
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Message 96469 - Posted: 13 May 2020, 23:48:00 UTC - in response to Message 96459.  

[snip]

thank you.

any ideas for solving this problem? maybe reinstall ubuntu or something? yesterday i did the update to 20.04. think thats the problem.
but both systems are identical(software). both have same version and i did same update on both.
the first system is runing into this problem, the secound is forking fine.

I doubt if you can fix it by doing anything on that computer. You probably have to wait for the project people to do it for you.
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Message 96470 - Posted: 13 May 2020, 23:54:23 UTC

This WU:
https://boinc.bakerlab.org/rosetta/result.php?resultid=1177441830 has only progressed 2 minutes in the last 12 hours. My phone is running other WUs just fine - having reported 4 valid WUs today for Rosetta, and more for smaller projects like WCG. It just isn't running.

I'll provide any additional information as requested, as soon as possible. Its deadline is tomorrow, and it has been stuck at 16% (4 hrs 10 minutes, now up to 12 minutes) for ages. What should I do?
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Message 96471 - Posted: 14 May 2020, 0:11:58 UTC - in response to Message 96470.  
Last modified: 14 May 2020, 0:12:54 UTC

This WU:
https://boinc.bakerlab.org/rosetta/result.php?resultid=1177441830 has only progressed 2 minutes in the last 12 hours. My phone is running other WUs just fine - having reported 4 valid WUs today for Rosetta, and more for smaller projects like WCG. It just isn't running.

I'll provide any additional information as requested, as soon as possible. Its deadline is tomorrow, and it has been stuck at 16% (4 hrs 10 minutes, now up to 12 minutes) for ages. What should I do?

For tasks like that, I'd let try to run for about twice the time limit set for your Rosetta@home tasks, then abort it. This is in case the problem is only in reporting the progress.

Aborting it is in case it is now waiting for something that will never happen,

In the meantime, you might try making more memory available for it, by blocking any other tasks from starting but allowing any tasks that have started to continue until they finish.
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Message 96474 - Posted: 14 May 2020, 4:08:27 UTC - in response to Message 96471.  

This WU:
https://boinc.bakerlab.org/rosetta/result.php?resultid=1177441830 has only progressed 2 minutes in the last 12 hours. My phone is running other WUs just fine - having reported 4 valid WUs today for Rosetta, and more for smaller projects like WCG. It just isn't running.

I'll provide any additional information as requested, as soon as possible. Its deadline is tomorrow, and it has been stuck at 16% (4 hrs 10 minutes, now up to 12 minutes) for ages. What should I do?

For tasks like that, I'd let try to run for about twice the time limit set for your Rosetta@home tasks, then abort it. This is in case the problem is only in reporting the progress.

Aborting it is in case it is now waiting for something that will never happen,

In the meantime, you might try making more memory available for it, by blocking any other tasks from starting but allowing any tasks that have started to continue until they finish.


Hmm - I paused one or two other WUs - and it started working again. Rip. I'll have to babysit Rosetta WUs on that device to make sure no more than 3 of them are running at once. At least it's a phone - so it won't be as much of a bother. Thanks so much, Robert.
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Message 96500 - Posted: 14 May 2020, 20:10:06 UTC

I posted a question over in the Q&A Android forum about a large number of error 11 returns on my Android 5.1.1 phone (Galaxy J3 2016). The phone does return some valid work units, and the work units seem to complete when they are sent to someone else's computer, so I suspect my phone is acting up, but I don't really have any good leads. Does anyone have any thoughts?

Thanks!
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