Problems and Technical Issues with Rosetta@home

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Sid Celery

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Message 87469 - Posted: 9 Oct 2017, 0:35:38 UTC - in response to Message 87468.  

Mini Rosetta tasks have just run out again

And some Robetta tasks have come through to fill the gap just in time to get through the weekend
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Admin
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Message 87474 - Posted: 9 Oct 2017, 18:43:49 UTC

Our minirosetta queue is pretty big now so I wouldn't expect it to run out anytime soon.

On a side note, please do not abort rosetta app jobs. Some researchers are starting to submit production jobs using the new app.
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Erich56

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Message 87516 - Posted: 14 Oct 2017, 5:24:55 UTC
Last modified: 14 Oct 2017, 5:26:11 UTC

Question: is there a way to choose only Minirosetta tasks for download?

The reason why I am asking this is that Rosetta 4.04 is using up a lot more RAM than Rosetta Mini 3.78 does (about 10 x more). Normally this would not matter that much, but on this machine I am running some other activities which take up quite some RAM. So the less RAM Rosetta uses, the better.
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Profile [VENETO] boboviz

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Message 87520 - Posted: 14 Oct 2017, 16:42:31 UTC - in response to Message 87516.  

Question: is there a way to choose only Minirosetta tasks for download?


Others asked this possibility in our profile preferences.
But admins said no.
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Usuario1_S

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Message 87580 - Posted: 29 Oct 2017, 7:19:29 UTC

Well 3 days without WUs, a few got to BOINC, but most of the days empty on Android client
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ta@HokkaidoUniv

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Message 87591 - Posted: 30 Oct 2017, 12:07:11 UTC
Last modified: 30 Oct 2017, 12:09:11 UTC

Hi moderators,

I don't know if this is the right thread, but I couldn't find "Minimum requirements" page, which was found on older website, on your new website.
(https://web.archive.org/web/20170110130953/http://boinc.bakerlab.org:80/rosetta/rah_requirements.php)

Adding it to the page for newbies would be helpful, I think.
(https://boinc.bakerlab.org/rosetta/join.php)
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Usuario1_S

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Message 87612 - Posted: 3 Nov 2017, 17:43:24 UTC - in response to Message 87591.  

Pretty much anything will do, I think probably, from Windows XP or better, contemporary Operating Systems probably would be about the same for Linux and MacOS, but it'd be better if you could make even minor upgrades, anything but the Motherboard/Mainbard, faster RAM, better CPU, and even a better GPU if you want to do some GPU computing withFolding@Homa, since Rosetta@Home doesn't have a GPU client at least yet IIRC, and you should be fine. ANyway BOINC will do a benchmark test, first time it runs, and from time to time, so it does know how much work to five you according to defaults and preferences that overwrite them
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Sid Celery

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Message 87643 - Posted: 9 Nov 2017, 0:52:08 UTC

I saw these messages earlier today on my PC in one location and assumed it was just temporary. I'm now at a completely different location and saw it again, even though the Server Status page shows no issues.

Thursday 09/11/2017 00:49:42 | Rosetta@home | update requested by user
Thursday 09/11/2017 00:49:45 | Rosetta@home | Sending scheduler request: Requested by user.
Thursday 09/11/2017 00:49:45 | Rosetta@home | Requesting new tasks for CPU
Thursday 09/11/2017 00:49:46 | Rosetta@home | Scheduler request failed: Server returned nothing (no headers, no data)
Thursday 09/11/2017 00:49:59 | | Project communication failed: attempting access to reference site
Thursday 09/11/2017 00:50:02 | | Internet access OK - project servers may be temporarily down.

Problem at your end?
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m

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Message 87644 - Posted: 9 Nov 2017, 1:13:21 UTC - in response to Message 87643.  

Problem at your end?

I'm now getting

Rosetta@home 09/11/2017 12:37:58 am 53 Temporarily failed upload of rb_10_30_78592_121217__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_528523_468_0_r1932281858_0: can't resolve hostname

so it looks like it.
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Profile shanen
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Message 87645 - Posted: 9 Nov 2017, 1:22:56 UTC - in response to Message 87644.  

Problem at your end?

I'm now getting

Rosetta@home 09/11/2017 12:37:58 am 53 Temporarily failed upload of rb_10_30_78592_121217__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_528523_468_0_r1932281858_0: can't resolve hostname

so it looks like it.


Your reference is unclear, but I think your final "it" might be a reference to packet filtering problems at their end?

By the way, it appears that these forums are being filtered quite strangely. If it is set to show newest posts firsts, then it starts you on the page with the oldest posts, but if you tell it to sort for oldest posts firsts, then you still wind up on a page with the oldest posts. That's for a thread like this one that has several pages of posts. On shorter threads, it still seems quite resistant to winding up where I'm expecting it to...
#1 Freedom = (Meaningful - Constrained) Choice{5} != (Beer^3 | Speech)
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JohnH

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Message 87714 - Posted: 19 Nov 2017, 20:05:29 UTC
Last modified: 19 Nov 2017, 20:08:14 UTC

Out of work units - only Android available.

Rosetta 0 904 7.68 (0.89 - 28.18) 123
Rosetta Mini 0 311739 6.44 (0.34 - 90.26) 12069
Rosetta Mini for Android 9990 31670 1.3 (0.36 - 50.7) 1868
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Sid Celery

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Message 87721 - Posted: 21 Nov 2017, 19:59:19 UTC
Last modified: 21 Nov 2017, 20:00:22 UTC

Does someone need to touch file_upload_handler.log ?
Tuesday 21/11/2017 19:45:49 | Rosetta@home | Computation for task amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0 finished
Tuesday 21/11/2017 19:45:52 | Rosetta@home | Starting task amir_11_16_junc_HHH_rd4_0603.min_rise1.41_0001_fragments_abinitio_SAVE_ALL_OUT_533984_1067_0
Tuesday 21/11/2017 19:45:52 | Rosetta@home | [cpu_sched] Starting task amir_11_16_junc_HHH_rd4_0603.min_rise1.41_0001_fragments_abinitio_SAVE_ALL_OUT_533984_1067_0 using minirosetta version 378 in slot 3
Tuesday 21/11/2017 19:45:54 | Rosetta@home | Started upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0
Tuesday 21/11/2017 19:45:57 | Rosetta@home | [error] Error reported by file upload server: can't open log file '../log_bwsrv2/file_upload_handler.log' (errno: 9)
Tuesday 21/11/2017 19:45:57 | Rosetta@home | Temporarily failed upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0: transient upload error
Tuesday 21/11/2017 19:45:57 | Rosetta@home | Backing off 00:03:05 on upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0
Tuesday 21/11/2017 19:49:02 | Rosetta@home | Started upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0
Tuesday 21/11/2017 19:49:04 | Rosetta@home | [error] Error reported by file upload server: can't open log file '../log_bwsrv2/file_upload_handler.log' (errno: 9)
Tuesday 21/11/2017 19:49:04 | Rosetta@home | Temporarily failed upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0: transient upload error
Tuesday 21/11/2017 19:49:04 | Rosetta@home | Backing off 00:04:51 on upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0
Tuesday 21/11/2017 19:51:53 | Rosetta@home | Started upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0
Tuesday 21/11/2017 19:51:56 | Rosetta@home | [error] Error reported by file upload server: can't open log file '../log_bwsrv2/file_upload_handler.log' (errno: 9)
Tuesday 21/11/2017 19:51:56 | Rosetta@home | Temporarily failed upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0: transient upload error
Tuesday 21/11/2017 19:51:56 | Rosetta@home | Backing off 00:08:06 on upload of amir_11_16_junc_HHH_rd4_0853.min_rise1.84_0001_fragments_abinitio_SAVE_ALL_OUT_533987_873_0_r2015715927_0

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Sid Celery

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Message 87722 - Posted: 21 Nov 2017, 20:04:38 UTC - in response to Message 87721.  

Cancel that. Went straight through on the next try.
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Profile [VENETO] boboviz

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Message 87764 - Posted: 28 Nov 2017, 11:44:20 UTC - in response to Message 87722.  

Empty queue.....
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JohnH

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Message 87768 - Posted: 29 Nov 2017, 11:00:41 UTC

No Rosetta or Rosetta mini tasks - only Android.
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Jim1348

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Message 87770 - Posted: 29 Nov 2017, 17:00:07 UTC

Very empty. Now I have to find a backup project.
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mmonnin

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Message 87771 - Posted: 29 Nov 2017, 18:32:35 UTC

I see about 10k Mini tasks now. Another 10k for Android.
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JohnH

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Message 87789 - Posted: 2 Dec 2017, 12:41:04 UTC

No Rosetta tasks A G A I N. Who minds this store??
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New Laptop

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Message 87795 - Posted: 2 Dec 2017, 20:35:52 UTC
Last modified: 2 Dec 2017, 20:36:39 UTC

New member here.

Boinc is not transferring data for Rosetts@home to my laptop. Communication has been continually deferred all night long.

Other Boinc projects are working fine.

Any ideas?
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Profile robertmiles

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Message 87797 - Posted: 3 Dec 2017, 4:38:36 UTC - in response to Message 87795.  
Last modified: 3 Dec 2017, 4:49:33 UTC

New member here.

Boinc is not transferring data for Rosetts@home to my laptop. Communication has been continually deferred all night long.

Other Boinc projects are working fine.

Any ideas?

You might mention some details that could affect transfers. For example, what version of BOINC are you running? What operating system are you using (for example, Windows 10)? 32-bit or 64-bit? What CPU does your computer use?

How much memory does your computer have? Rosetta@Home requires more than most other BOINC projects.

Have Rosetta@Home tasks been failing on your computer lately? If enough have, expect rather few tasks for the next few days.

Note that if you're running Windows 10 and have installed the recent Fall Update, expect some things not to work until you turn your computer off for at least one minute, then turn it on and let it reboot. The usual restart without power off is NOT adequate just after installing this update.

What share of time on your computer did you assign Rosetta@Home? If 0, then expect Rosetta@Home tasks only when BOINC has tried and failed to get tasks from all other BOINC projects it is participating in.
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Message boards : Number crunching : Problems and Technical Issues with Rosetta@home



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