Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
Previous · 1 . . . 130 · 131 · 132 · 133 · 134 · 135 · 136 . . . 278 · Next
Author | Message |
---|---|
Sid Celery Send message Joined: 11 Feb 08 Posts: 1990 Credit: 38,522,839 RAC: 15,277 ![]() |
After getting a nudge <cough> from Grant I asked about all this. The reply as follows There is no server issue failing to create Rosetta 4.20 tasks. We have run out. All those 2.3 million queued tasks on the front page really are all Python tasks. In their words "a huge queue" However, regarding the shortage and re-supply of Rosetta 4.20 tasks: "This will be temporary since there will be many more protein protein interaction Rosetta design jobs loaded into the queue" That comes across to me like they're preparing them now and it won't be too much longer before we see them, though no actual ETA, nor any clue how many "many" is. So, don't panic, more work will arrive before too long. Famous last words... Also, while people do disappear around the bigger holiday periods like Christmas and New Year, I've often had replies on Saturdays and Sundays, so things do happen at weekends. Just that I think it's unreasonable to expect that will always be the case. ![]() ![]() |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
After getting a nudge <cough> from Grant I asked about all this. The reply as follows If there are so many Python tasks, then why can't I get them? I've monkeyed around with all the parameters in BOINC and I get nothing. Right now due to the last monkeying around the queue to each project is all messed up so I am playing catch up. About the only thing I have not done is remove the project from BOINC, do a system clean and reinstall RAH on BOINC. |
![]() Send message Joined: 28 Mar 20 Posts: 1486 Credit: 14,660,127 RAC: 13,901 ![]() |
If there are so many Python tasks, then why can't I get them?One last wild guess- Clean up any left over VMs that are gumming things up. To completely delete any virtual machine from VirtualBox on Mac, Windows, or Linux, simply do the following:Remove an OS and Delete a Virtual Machine in VirtualBox Grant Darwin NT |
Bryn Mawr Send message Joined: 26 Dec 18 Posts: 375 Credit: 10,725,699 RAC: 5,010 ![]() |
After getting a nudge <cough> from Grant I asked about all this. The reply as follows Many thanks for the update. At the rate it’s going it will take years to get through a couple of million Python tasks so the best of luck with that, I’ll wait for the normal Rosetta tasks. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
have a look at VM cpu count, my frankenstine app_config for RPP duz do `something` https://boinc.bakerlab.org/rosetta/result.php?resultid=1449470255 have a look at my valid RPP tasks [I dident get it working on all of them] or whatever it is doing https://boinc.bakerlab.org/rosetta/results.php?userid=139198&offset=0&show_names=0&state=4&appid=9 <stderr_txt> -snip- 2021-11-14 04:18:14 (1236): Create VM. (boinc_abea2fc7e66074d6, slot#8) 2021-11-14 04:18:14 (1236): Setting Memory Size for VM. (6144MB) 2021-11-14 04:18:15 (1236): Setting CPU Count for VM. (5) 2021-11-14 04:18:15 (1236): Setting Chipset Options for VM. 2021-11-14 04:18:15 (1236): Setting Boot Options for VM. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
If there are so many Python tasks, then why can't I get them?One last wild guess- Clean up any left over VMs that are gumming things up. I knew how to remove VM's, maybe I will remove Oracle Vbox (via Revo Uninstaller) and remove Rosetta from the list and clean my drive with CCcleaner and Wise365 and then reinstall Vbox and add Rosetta back to the list. If this fails I have no freaking idea what to do other than complete all my work and unistall BOINC (via Revo) and clean the drive and reinstall it. Then its fresh. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
11/14/2021 3:58:02 PM | Rosetta@home | update requested by user 11/14/2021 3:58:06 PM | Rosetta@home | Sending scheduler request: Requested by user. 11/14/2021 3:58:06 PM | Rosetta@home | Requesting new tasks for CPU 11/14/2021 3:58:08 PM | Rosetta@home | Scheduler request completed: got 0 new tasks 11/14/2021 3:58:08 PM | Rosetta@home | No tasks sent 11/14/2021 3:58:08 PM | Rosetta@home | Project requested delay of 31 seconds Tasks ready to send 5000 rosetta python projects 5000 23096 RAH was removed and added back Vbox was removed, registry cleaned, drive cleaned, rebooted after install. No VM's are active at this time. NO LHC running. No app_config No cc_config limiting RAH Just a GPU restriction to put prime grid on my 1080. Preferences set for "Home" all settings are default. There is NOTHING on my end restricting RAH from doing anything. Yet all it wants is 4.2 So what the %$#&%& is wrong with RAH? |
Sid Celery Send message Joined: 11 Feb 08 Posts: 1990 Credit: 38,522,839 RAC: 15,277 ![]() |
All those 2.3 million queued tasks on the front page really are all Python tasks. In their words "a huge queue" I don't know. Why can't you? I'm a complete beginner on the subject. I did a little reading a week or two back and the only thing I picked up was that there are some quirks/differences/nuances with Virtual Box versions/settings so it's recommended to get the package from the Boinc download page. While I was away (again) I decided to do that on the PC I had there - a 4-core i3-8350K with 16Gb RAM. What a terrible mistake that turned out to be. All started well enough. I had to increase my disk allocation from 15Gb to 25Gb, then to 35Gb, then 40Gb, then 45Gb to get tasks to come down, but they arrived easy enough. I had the space available. And the first started easy enough - so I went off to work. 14hrs later I came back and the 1st task was still running, but 90% complete. So I looked at the task detail. No recorded runtime, no recorded CPU time/ Both showed "---". Oh... A 2nd python task had started too and reached 7hrs. Also no recorded runtime or CPU time and the 2nd task was now waiting for memory. On a 4-core machine, no 3rd or 4th tasks were running. Neither further python tasks nor WCG tasks that were part of my cache. So I aborted the non-running 2nd Python task to see if that gave room for something else to run. It may have - I can't recall now. So I rebooted the PC and a few Python tasks started to run but stopped before a minute was up, some saying "waiting for memory" and some saying "Postponed: VM environment needed to be cleaned up" Programmers don't tend to be the most literate people in the world, so it wasn't clear to me whether the VM environment had needed (past tense) to be cleaned up and that was now done, or whether it still needed to be cleaned up Either way, nothing was running. Is that what you meant too when you wrote "each project is all messed up"? Maybe not, but it rather seems to me that the only thing worse than not being able to get VM tasks to download is successfully getting them to download. That PC is currently a disaster zone for Boinc. After 2 days, nothing is running right, so I've left it while I have a think or get advice. I tried to uninstall Boinc, hoping it would uninstall Virtual Box too, but Virtual Box seems to have remained in place and I can't see how to remove it. I've looked at Grant's link to how to remove Virtual Box and the first line says "Open VirtualBox and go to the VM VirtualBox Manager screen". I failed there. I have no idea where it is. Is your problem worse than mine? I very much doubt it. At the start I said I was a beginner. Or a novice. Maybe the best word is "dunce". If you haven't previously installed Virtual Box and got it to work successfully, whatever you do, don't install this one. Run a mile and wait for Rosetta 4.20 tasks, however long they take. I did ask about my VM problems and the reply I got was "I also am not that familiar with how the client handles the VM jobs with other projects but it seems to work ok on my lab workstation" so if anyone's expect help from above, I doubt it's going to come. My impression is that you guys here will have better practical knowledge on the subject, so I'll ask for help here rather than via Rosetta's admin. That's maybe not what anyone wants to read, but better I say it than someone expect the cavalry to arrive over the hill to sort things out. ![]() ![]() |
Sid Celery Send message Joined: 11 Feb 08 Posts: 1990 Credit: 38,522,839 RAC: 15,277 ![]() |
RAH was removed and added back Your post crossed over while I was typing. Maybe your problems are as bad as mine after all. My experience isn't any better. I wish I knew how to remove Vbox so I could be in as bad a state as you. Welcome to the new normal. ![]() ![]() |
Falconet Send message Joined: 9 Mar 09 Posts: 350 Credit: 1,017,068 RAC: 223 |
To remove Virtualbox on Windows 10, you can simply go to the Start Menu and type "add or remove programs" It should show up immediately. Alternatively, find the "Oracle VM VirtualBox" folder, click on it and right-click on "Orable VM VirtualBox". An option to uninstall should appear on the menu. After that, find VirtualBox on the list and proceed with the uninstall process. ![]() |
![]() Send message Joined: 16 Jun 08 Posts: 1225 Credit: 13,858,370 RAC: 2,151 ![]() |
[snip] There is NOTHING on my end restricting RAH from doing anything. You might check how much of your computer's memory BOINC is allowed to use. The python tasks reserve almost 8 GB of memory, even if they don't actually use it. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
Postponed: VM environment needed to be cleaned up This means your virtual box program has a bunch of dead tasks in it and you need to open it up and go to each red icon task and right click and select remove virtual machine or some wording to that effect. Then you confirm delete and it goes away. You can actually hold the shift button down and click on each red icon machine and then right click and remove and confirm. They should all go away. Then your VM environment is clean. It is probably the remnants of all the tasks you aborted. Since I haven't run python in a long time I am not sure what is going on. The other guys can help you with that. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
[snip] Memory is set for 100% 11/14/2021 4:04:59 PM | | max memory usage when active: 24501.59 MB 11/14/2021 4:04:59 PM | | max memory usage when idle: 24501.59 MB Currently with no Atlas I am using only 7.6GB of that sum. And being there is no way that I am aware of to block 4.2 tasks in app_config and no way to tell RAH that for python use only X amount of RAM or X number of cores, I am trapped with no tasks. |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
Welcome to the new normal. If you do manage to get the pythons, you will wish that you hadn't. I can get them on Ubuntu 20.04.3 easily, but they don't run well anyway, even with lots of memory. I have 96 GB, and have tried restricting them to 10 work units max on a Ryzen 3900X (24 cores), and half of them still hang up. And that is if they don't stop with "Vm job unmanageable" suspensions. https://boinc.bakerlab.org/rosetta/forum_thread.php?id=6893&postid=103230#103230 https://boinc.bakerlab.org/rosetta/forum_thread.php?id=6893&postid=103232#103232 I am not sure how Rosetta is manged these days, but getting stuff to work is not high on their priority list. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
RAH was removed and added back Sid it's easy to remove Vbox. Just the same as you remove any other program. Right click the start menu icon of Vbox and remove it. I use Revo unistaller because it has the option to scan for registry remnants and delete them. I use Wise365 to clean up everything else that may have been missed by Revo. Then I know the system is totally clean. |
![]() ![]() Send message Joined: 30 May 06 Posts: 5664 Credit: 5,710,284 RAC: 2,004 ![]() |
11/14/2021 7:23:23 PM | Rosetta@home | Resetting project 11/14/2021 7:25:24 PM | Rosetta@home | update requested by user 11/14/2021 7:25:27 PM | Rosetta@home | Master file download succeeded 11/14/2021 7:25:32 PM | Rosetta@home | Sending scheduler request: Requested by user. 11/14/2021 7:25:32 PM | Rosetta@home | Requesting new tasks for CPU 11/14/2021 7:25:35 PM | Rosetta@home | Scheduler request completed: got 0 new tasks 11/14/2021 7:25:35 PM | Rosetta@home | No tasks sent 11/14/2021 7:25:35 PM | Rosetta@home | Project requested delay of 31 seconds Again..no app_config or cc_config that applies to this project. Clean slate. I give up. USELESS! And as usual no one from the project cares to read anything here. I have been with RAH for a long time, its a shame they have resorted to leaving everyone in the dark now and no responding to PM or anything. Again USELESS. Total credit 5,116,352 Recent average credit 2,969.42 Rosetta@home member since 30 May 2006 - 15 years and they now start to ignore everyone. Really really smart. |
![]() Send message Joined: 1 Dec 05 Posts: 1864 Credit: 8,185,649 RAC: 7,167 ![]() |
I give up. USELESS! And as usual no one from the project cares to read anything here. I hope that ALL these problems with virtual wus will, despite all, help to boost scientific research of the project. But it's clear that they have a LOT of problems to interface with volunteers |
Sid Celery Send message Joined: 11 Feb 08 Posts: 1990 Credit: 38,522,839 RAC: 15,277 ![]() |
To remove Virtualbox on Windows 10, you can simply go to the Start Menu and type "add or remove programs" It should show up immediately. I went to "add or remove programs". I couldn't see it anywhere. I'll look again now I know what name to look for, but I won't be at that PC for another 3 or 4 days. Out of sight, out of mind. ![]() ![]() |
Sid Celery Send message Joined: 11 Feb 08 Posts: 1990 Credit: 38,522,839 RAC: 15,277 ![]() |
Postponed: VM environment needed to be cleaned up Thanks. If I ever find the folder where they reside I'll try it. No clue where that would be though. ![]() ![]() |
Sid Celery Send message Joined: 11 Feb 08 Posts: 1990 Credit: 38,522,839 RAC: 15,277 ![]() |
There is NOTHING on my end restricting RAH from doing anything. I appreciate the help. I'll come back to your messages and look more closely when I return to that PC. I didn't mention I also put it it on a 2nd PC too before I realised all the issues I had, because I didn't want to look like I was even more of an idiot than I am. Well, I am... <sigh> ![]() ![]() |
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
©2024 University of Washington
https://www.bakerlab.org