Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Hopefully it means something to someone somewhere.Ah: divided by a common language… :-) I was going to say that, but what about the Y B and X? |
strombergFs Send message Joined: 18 Mar 21 Posts: 11 Credit: 150,490 RAC: 0 |
same here, 10x C4s waiting for work due to the 6GB requirement. Hopefully soon there will be a lot of tasks for the small computers available. In the meanwhile i let them crunch WCG. |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
I have never seen such easy Rosettas. They all under 500 MB on 50 Ryzen 3000 cores (Ubuntu 20.04.2). But there is always WCG. PS - Even less on Win10. Under 200 MB on 10 Ryzen3600 cores. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,014 |
I have never seen such easy Rosettas. They all under 500 MB on 50 Ryzen 3000 cores (Ubuntu 20.04.2). Those may be taking advantage of a way that compilers often organize the compiled code. The read-write sections cannot be shared between tasks, but all the tasks running can share a read-only section. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
I allocate 28Gb from 32Gb totalOnce you've started them, I wonder if Boinc adjusts to what they're actually using, or leaves the requested 6.5GB there just in case? You could see what happens if you try to run only Rosettas. I've speculated that's the case too. Demand a maximum amount to start, then let the task decide once it's running. I cleared all the problem tasks on my laptop before by setting NNT to Rosetta & WCG and only when all other tasks had completed did my problem task start. That was a while ago. Now I've got another one problem Rosetta task. I've suspended all unstarted Rosetta tasks, set NNT again, kept my last few WCG tasks so that as each of the 3 running Rosetta tasks finish, it switches to less-demanding WCG tasks to see if enough RAM is freed up. If it isn't, let the WCG tasks complete as well until there's only the one problem Rosetta task. If it runs, fine. If it doesn't, abort it. What a performance... |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
Hopefully it means something to someone somewhere.Ah: divided by a common language… :-) 1) I don't know 2) It's none of my business and doesn't impinge on me or anyone else in any way |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
What? It's a valid point. Why would you think a biologist knows about the code?They have to be taught at some time. Which activity do you think they are allowed to do first? Or do you think that they can start both at the same time, with no tests of what the are doing works properly? When you're in a hole, stop digging |
mrhastyrib Send message Joined: 18 Feb 21 Posts: 90 Credit: 2,541,890 RAC: 0 |
What? It's a valid point. Why would you think a biologist knows about the code? All the cool kids who work on projects like this one, using proprietary software, know how to code, grandpa. Like just about everything else in life, some are better at it than others. Some are experienced and others are not. SiDock@home is chugging along merrily on most of my boxes. I'm getting the memory appetite notice on the boxes with less than 8gb of RAM. One box scooped up some projects for Rosetta@home, so the comment that they are squeezing out a few every so often seems to be correct. |
Bryn Mawr Send message Joined: 26 Dec 18 Posts: 398 Credit: 12,294,748 RAC: 6,222 |
Over the course of this afternoon I’ve had 6 segv errors, all on files starting miniprotien. Anyone else? Or do I start checking my hardware? |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
Over the course of this afternoon I’ve had 6 segv errors, all on files starting miniprotien. I got a signal 11, but nothing about a segv. https://boinc.bakerlab.org/rosetta/result.php?resultid=1365882560 |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
I have never seen such easy Rosettas. They all under 500 MB on 50 Ryzen 3000 cores (Ubuntu 20.04.2).WCG are not getting any tasks from me. Their admins are too arrogant. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
If it's too big, I run it on a bigger machine. My PCs have 8, 8, 8, 16, 36, 36, and 64GB.I allocate 28Gb from 32Gb totalOnce you've started them, I wonder if Boinc adjusts to what they're actually using, or leaves the requested 6.5GB there just in case? You could see what happens if you try to run only Rosettas. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Sometimes they're interesting. There's the drhicks ones. Some Universe tasks said "on_error" which is rather pessimistic. I wonder what Rosetta's "save all out" means?Hopefully it means something to someone somewhere.Ah: divided by a common language… :-) |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
I'm not in a hole and I think you're confusing the two people you're replying to.What? It's a valid point. Why would you think a biologist knows about the code?They have to be taught at some time. Which activity do you think they are allowed to do first? Or do you think that they can start both at the same time, with no tests of what the are doing works properly? |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
I disagree. I'm sure you can become a brilliant biologist without knowing the first thing about coding.What? It's a valid point. Why would you think a biologist knows about the code? |
Bryn Mawr Send message Joined: 26 Dec 18 Posts: 398 Credit: 12,294,748 RAC: 6,222 |
Over the course of this afternoon I’ve had 6 segv errors, all on files starting miniprotien. Yes, signal 11 is a segv fault. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,780,807 RAC: 5,492 |
All the cool kids who work on projects like this one, using proprietary software, know how to code, grandpa. +1 They are not pure coders, they are biologists that use code. They want results, not to create "beautiful" (and optimized) code. And, in the past, Rsj5, analizing the rosetta sw said that is "fluffy code". |
DizzyD Send message Joined: 23 Nov 20 Posts: 6 Credit: 1,438,330 RAC: 0 |
I just suspended a task that has been running for 16:19:35 (stuck at 00:10:15 remaining). Any ideas how to get this one to finish and get credit for it? |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,014 |
I just suspended a task that has been running for 16:19:35 (stuck at 00:10:15 remaining). Any ideas how to get this one to finish and get credit for it? It sometimes helps to shut down BOINC, then restart BOINC and then the task. Progress seeming to freeze near the end of a task is often a sign that the task was created with a severe underestimate of how long the task would run. |
DizzyD Send message Joined: 23 Nov 20 Posts: 6 Credit: 1,438,330 RAC: 0 |
It sometimes helps to shut down BOINC, then restart BOINC and then the task. OK, thank you. I just tried that (rebooted in between as well), and it reset to ~16% complete... Maybe I just kill it if it's going to run forever? |
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
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