Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,014 |
Hello. After approx. 15 years with Baker Lab, I've experienced an interesting problem, under the general category, computer errors. [snip] This line seems to be the important one: ERROR: ERROR: FragmentIO: could not open file 00001.500.6mers I've seen such errors in most of my recent failed tasks from R@H, so it is probably an error in what was included in the workunit. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,014 |
[snip] Have you considered the possibility that many of those creating work-units are not yet very good at estimating how much RAM they will need to run? You appear to be assuming that those who write the code for the application are the same ones creating the workunits. They have to be taught at some time. Which activity do you think they are allowed to do first? Or do you think that they can start both at the same time, with no tests of what the are doing works properly? |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
Name ajzjTxIe_YBAABB_ABYBB_AAAAAAXB_AAY_CGGGGGGCCGGGGGCGGGGGGGGCGGGC_1-4_2-5_3-6.pdb_0001_abinitio_1_abinitio_SAVE_ALL_OUT_1389656_916_1 It seems to be the work units that have names that look like someone fell asleep at the keyboard or a tin o fizzy stuff gon sticky keys that are the worst with over 800 of the whack job units in my Error list, that's is a lot of duff guff to clog up the data base and turn it into more of a septic tank. |
mikey Send message Joined: 5 Jan 06 Posts: 1895 Credit: 9,214,047 RAC: 1,450 |
Name ajzjTxIe_YBAABB_ABYBB_AAAAAAXB_AAY_CGGGGGGCCGGGGGCGGGGGGGGCGGGC_1-4_2-5_3-6.pdb_0001_abinitio_1_abinitio_SAVE_ALL_OUT_1389656_916_1 Hopefully it means something to someone somewhere. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
Have you considered the possibility that many of those creating work-units are not yet very good at estimating how much RAM they will need to run? Christ... |
Brian Nixon Send message Joined: 12 Apr 20 Posts: 293 Credit: 8,432,366 RAC: 0 |
Hopefully it means something to someone somewhere.Ah: divided by a common language… :-) Perfectly comprehensible this side of the pond. tin o[f] fizzy stuff = can of soda duff = defective guff = nonsense Also “septic tank” is occasionally used as rhyming slang for “Yank”, but I don’t think that’s what’s meant here. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,780,807 RAC: 5,492 |
You appear to be assuming that those who write the code for the application are the same ones creating the workunits. I hope they work on the same office/building.....or that they keep in touch constantly! Or do you think that they can start both at the same time, with no tests of what the are doing works properly? Ralph@home exists for that. |
Brian Nixon Send message Joined: 12 Apr 20 Posts: 293 Credit: 8,432,366 RAC: 0 |
will just run SiDock@home, for awhile. Natalia has a cheerful, and informative approach to running things.Yeah – it’s a new project: they’re still keen. I dare say it was like that here in the early days, too? And that 15 years from now users will be moaning that the SiDock admins don’t talk to them any more… |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,780,807 RAC: 5,492 |
And that 15 years from now users will be moaning that the SiDock admins don’t talk to them any more… There are "old" projects that have active admins on forums. |
Dougga Send message Joined: 27 Nov 06 Posts: 28 Credit: 5,248,050 RAC: 0 |
My linux client appears to be stuck with issues with messaging from the server. I removed Rosetta and added it back. I'm not getting any work untis. It says ... Requesting new tasks from CPU Scheduler requests complete: got 0 tasks No tasks sent Project requested delay of 31s After the 31 seconds, no further requests are made Manual requests reruns the loop I've uninstalled the program, rebooted etc... |
Brian Nixon Send message Joined: 12 Apr 20 Posts: 293 Credit: 8,432,366 RAC: 0 |
I'm not getting any work untis.Neither is anybody else. There is no work that needs doing at the moment. Try again in a couple of days’ time. |
PorkyPies Send message Joined: 6 Apr 20 Posts: 45 Credit: 1,650,779 RAC: 0 |
I'm getting new work. My larger x64 machines are only getting 11 per request so it takes a few goes to get enough for all cores. On the Pi4 4GB I'm still getting; Rosetta@home 9/04/2021 9:16:50 AM Message from server: Rosetta needs 6675.72 MB RAM but only 3460.72 MB is available for use. The 6.6GB free memory requirement hasn't changed. MarksRpiCluster |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
Hopefully it means something to someone somewhere.Ah: divided by a common language… :-) Lol! Too much information. Wrt whether that's what was meant, I didn't think it was wrt the slang. I thought it was wrt to the CGCCGGG stuff in the task names Isn't that genetic code? I've assumed it was. Whether it is or not, it's only important it means something to them, not to us. Unless they're too dumb to understand what they're naming means - far be it for me to exclude all possibilities... |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Maybe it has something to do with the recent SSL post they posted on the Forum News.What post do you refer to? I can't see one in the news section of the forums, apart from the 200 post long thread from last year. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
The reason I didn't see it is I don't use that horrid black and white neanderthal Boinc Manager, I use Boinctasks. If Boinctasks didn't exist, I wouldn't be running Boinc.Where is this button? I've never seen it. I assumed that it changed mine to local because I changed a local setting - eg the buffer size.Unless you have set it to use local settings, it will use whatever you have set in your account's Computing preferences section.What causes it to switch to local settings? I never changed it to local, I would have remembered doing that, especially since I've installed Boinc on new machines recently. So I guess it changes to local the first time you input a local setting. And yes, I subconsciously ignore anything bright, larger, flashing, etc, as it's probably an advert. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
I allocate 28Gb from 32Gb totalOnce you've started them, I wonder if Boinc adjusts to what they're actually using, or leaves the requested 6.5GB there just in case? You could see what happens if you try to run only Rosettas. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Why not? It's a word for teenagers to use, no matter when they were born. I'm no longer a teenager unfortunately.When I was a teenager, |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Stating "when I was a teenager" only implies I'm at least 20.There’s nothing we can do about it |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
What? It's a valid point. Why would you think a biologist knows about the code?They have to be taught at some time. Which activity do you think they are allowed to do first? Or do you think that they can start both at the same time, with no tests of what the are doing works properly? |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
I sent an email like that, or rather my cat did. The cat I found a new home for when it decided the monitor was a toilet. Cost me money and you leave.Name ajzjTxIe_YBAABB_ABYBB_AAAAAAXB_AAY_CGGGGGGCCGGGGGCGGGGGGGGCGGGC_1-4_2-5_3-6.pdb_0001_abinitio_1_abinitio_SAVE_ALL_OUT_1389656_916_1 |
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
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