Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,780,807 RAC: 5,492 |
No wonder that last batch of new work went so quickly. Wus with bugs, empty queues, lack of communications. This is why i reduce my cpu time in this project... |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
This is why i reduce my cpu time in this project...I used to run Rosetta by itself. Now I run SiDock too (both at 100%) and don't have to worry about switching anything. Of course, Rosetta then gets less total CPU time, but it appears that they don't need it/can't use it anyway. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,780,807 RAC: 5,492 |
Of course, Rosetta then gets less total CPU time, but it appears that they don't need it/can't use it anyway. It doesn't take much to keep the volunteers... |
Tom Send message Joined: 17 May 20 Posts: 2 Credit: 82,463 RAC: 0 |
I must agree with Brian, pretty disappointing that I have yet to see a project admin come in even acknowledging there is an issue. I'll give it to the end of the week. If it doesn't appear anyone is working on the problem I'll most likely drop Rosetta and look for a different project to donate processing to. |
Greger Send message Joined: 3 May 14 Posts: 10 Credit: 116,447,255 RAC: 27,086 |
<message> process exited with code 1 (0x1, -255)</message> ERROR: ERROR: FragmentIO: could not open file 00001.500.6mers ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
Returning to my anecdote about a remote PC I have being unable to download any Rosetta tasks, so running its backup project, WCG, 24/7, my local laptop is also doing weird things. It refuses to run a particular Rosetta task, so it's running those it has room for - a combination of WCG and later Rosetta tasks, but only 3 on 4 cores. Now I know it's definitely happening, I've set NNT and suspended all running tasks except for the one problem Rosetta task. It still refuses to run, even as the only task. No tasks are running in my experiment! The saga continues after a few tasks completed. The same two tasks refuse to run and other tasks run in their place - 2 out of 4 cores. I suspended all tasks except the ones waiting for memory and still they refused to run [Leave non-GPU tasks in memory while suspended - checked] I decide to abort the 2 tasks. Two new tasks run in their place and all 4 cores now in use. That took more messing around than I expected. Let's see how it goes from now on |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
Seeing as it seems to be whining season for the excessively-entitled it might be worth making myself as popular as usual by stating the obvious that I can't be the only one aware of. 1) Looking at my main PC, I've downloaded 54 tasks today across 10 separate downloads. Even my weirdly-running laptop managed 6 more. And my Android 4 more. For all the comments about it (none) it seems like I'm the only one. Of course, I'm not. 2) There are people here from all over the world, and a similar range of nationalities and creeds at UW from what I've observed, so some people may not be aware that UW is in the USA, which is a largely Christian country. Traditionally their institutions and work-places close for the Easter holidays which have been taking place over the last4 days, from "Good Friday" to "Easter Monday" even if some of the people working there don't personally celebrate. But, of course, during this holiday period people here expect to demand the creation and issue of sufficient work to serve at least a third of a million tasks per day to the world at large, with no respite. And the amazing thing is, a fair few do seem to have come down. Maybe my caches aren't quite completely full, but near enough. And as thanks, I see the usual levels of appreciation here, to wit, "if you don't supply what I need 24hrs a day, even during the holiday season, and provide chapter and verse on progress to tell us what we already know, loyalty will be shown by reducing contribution levels or leaving altogether" Maybe you should have the occasional day off from your disgusting levels or personal entitlement too. Though tbf, there's never any shortage of that. Yeah, save it. I heard last time too. And the time before that. And the time before that etc |
mrhastyrib Send message Joined: 18 Feb 21 Posts: 90 Credit: 2,541,890 RAC: 0 |
We had an interruption in power here last night (it happens), and when I got up this AM I found one of my hosts was completely dead. So, I restarted it and when I got into BOINC, I am finding that every task that I download aborts for "Computational Error" within about 20 seconds. While this was going on, I tried to add SiDock as another project, with the intent to diversify as some have suggested (currently running Rosetta only). That produced an error that said that I could not join because I am required to agree to the terms of service. Which I did. I tried it a couple more times to confirm it. Now I'm wondering if the power failure messed up something in BOINC, or if the problems are coincidental and not related to me. Any suggestions? {EDIT} I fixed the problems with joining SiDock. But all of the tasks from that project error out just like the ones for Rosetta. So I've suspended both projects until I can figure out a solution. |
mrhastyrib Send message Joined: 18 Feb 21 Posts: 90 Credit: 2,541,890 RAC: 0 |
Maybe you should have the occasional day off from your disgusting levels or personal entitlement too. You said it yourself: there's a lot of diversity here. Some people are easygoing; others are more anal for whatever reason. Me, I have obsessive-compulsive tendencies, so it rubs me the wrong way when I can't get the idealized version of Rosetta participation that I envision. Some people might find that disgusting. I know that others dislike the use of "@" and the slag use of "dude." People have bad days sometimes, and it's easy to take it out on an online project that seems to be more machine than human. Speaking of Easter and bad days, just for kicks, I bought some cool egg decorating kits, which contained markers, stickers, stencils, etc. I was trying to do an elaborate floral pattern on my eggs, to give it some "wow" cred, but the stencil kept slipping. I became frustrated, and then distraught. More distraught than I am now, with one of my hosts not producing anything. More distraught than I had any right to be. But no matter how carefully I worked at it, I couldn't get the stencil to stay in the right place. I guess that you could say I was having an eggs 'n stencil crisis. |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 2,018 |
I received 5 Rosetta work units on my laptop today. They all errored out. The desktop also received 8 work units, 6 of which errored out. |
Bryn Mawr Send message Joined: 26 Dec 18 Posts: 398 Credit: 12,294,748 RAC: 6,222 |
We had an interruption in power here last night (it happens), and when I got up this AM I found one of my hosts was completely dead. So, I restarted it and when I got into BOINC, I am finding that every task that I download aborts for "Computational Error" within about 20 seconds. At the moment every Rosetta task I get is bombing Computation Error within 25 seconds of starting. |
Brian Nixon Send message Joined: 12 Apr 20 Posts: 293 Credit: 8,432,366 RAC: 0 |
Ignore the …_abinitio_1_abinitio_… tasks; lots of people are reporting problems with those. For the others, this is a clue that all is not well: couldn't start app: Input file rosetta_4.20_x86_64-pc-linux-gnu missing or invalid: file missingTry Reset project under Project commands (Simple view) or on the Projects tab (Advanced view). Not sure about the SiDock issue; try the forums over there. {EDIT, though we’re way off topic here} You’re missing some prerequisite system libraries (glibc-2.27) which are newer than your version of Linux. It might be possible to install those alongside your system glibc, or it might be easier to update the whole OS. SiDock uses much more modern software than Rosetta; I have the same problem that I can’t run it on the ancient version of Windows on my crunchers… |
mrhastyrib Send message Joined: 18 Feb 21 Posts: 90 Credit: 2,541,890 RAC: 0 |
You’re missing some prerequisite system libraries (glibc-2.27) Woah, dude, you can tell that even though my system was turned off? Did you find the horse porn folder too? That was from...uh, my kid brother. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,014 |
We had an interruption in power here last night (it happens), and when I got up this AM I found one of my hosts was completely dead. So, I restarted it and when I got into BOINC, I am finding that every task that I download aborts for "Computational Error" within about 20 seconds. The last dozen I received also failed within 25 seconds. All of them had log files mentioning a missing file with 6mers in its name. It looks like the project staff contains some students who still need lessons on how to read the task log files and correct any errors they find. |
DizzyD Send message Joined: 23 Nov 20 Posts: 6 Credit: 1,438,330 RAC: 0 |
Maybe we are all just waiting for the resurrection of this project? Isn't that what Easter is all about? |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,380,064 RAC: 20,136 |
The last dozen I received also failed within 25 seconds. All of them had log files mentioning a missing file with 6mers in its name.And only being able to get 2 new Tasks at a time it's going to take a long time for all of these duds to be cleared out. My maximum Tasks per day & the number of errors i'm returning are rapidly approaching each other. At this rate no one will be able to get more than a couple of Tasks (when some that can be processed without error are eventually released) because they will have used up all of their Maximum Tasks per day credit. It'll take 8 hours to return a valid result (with luck) & then bump up the limit to a couple of Tasks, Another 8 hours to return some more Valid results, and bump up the limit by a few more Tasks. It's leading to an extremely ugly mess. Grant Darwin NT |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,380,064 RAC: 20,136 |
Ignore the …_abinitio_1_abinitio_… tasks; lots of people are reporting problems with those.Of the ones i have had, i have 6 running, and 475 - so far - that errored out in seconds. Grant Darwin NT |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,780,807 RAC: 5,492 |
Ignore the …_abinitio_1_abinitio_… tasks; lots of people are reporting problems with those.Of the ones i have had, i have 6 running, and 475 - so far - that errored out in seconds. So errors are in: - _abinitio_1_abinitio_ - 6mers Practicaly, all wus!! |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2140 Credit: 41,518,559 RAC: 10,612 |
But, of course, during this holiday period people here expect to demand the creation and issue of sufficient work to serve at least a third of a million tasks per day to the world at large, with no respite. Everything running great last night. Got up to see 3 remaining running tasks and the entire rest of my cache with the Computation errors we've all now seen. So much for rushing through fresh tasks. Slower and more sure may be the better policy. Took WCG off NNT. 217 tasks came down... That should certainly provide some breathing space |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Unless you have set it to use local settings, it will use whatever you have set in your account's Computing preferences section.What causes it to switch to local settings? |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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