Minirosetta 3.62-3.65

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Profile David E K
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Message 79387 - Posted: 9 Jan 2016, 20:43:37 UTC

The limit is set based on the BOINC client benchmark results and our server side fpops limit configuration setting (rsc_fpops_bound) and since your new computer is very fast and you have a relatively long run time setting, it was hitting the limit. This is explained well here:

http://climateapps2.oerc.ox.ac.uk/cpdnboinc/forum_thread.php?id=5512

which I found googling the topic. This also explains how to fix it on the client side as a temporary fix. Since I\'ve updated our rsc_fpops_bound value on our server, new jobs should have a value that allows your fast computer to run the 2 day run time.
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Message 79395 - Posted: 11 Jan 2016, 16:50:39 UTC
Last modified: 11 Jan 2016, 16:52:11 UTC

Great news! Thank you very much.
Ich will switch back to two days if all my current work is done.
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Message 79434 - Posted: 23 Jan 2016, 5:40:43 UTC

Hi.

Since there is not a tread for app 3.67 I\'ll put this here, it erred after 48 min this morning it was one of the last for the old app I had left.


P75901_PF03239_1-266_REDO_cst_v02_t000__krypton_SAVE_ALL_OUT_03_09_320949_609_2

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=710119997

Starting work on structure: _00001
# cpu_run_time_pref: 14400

ERROR: unknown atom_name: VRT N
ERROR:: Exit from: src/core/chemical/ResidueType.cc line: 3187
[0xd0a3b23]
[0xcaa8dc9]
[0xa2e271f]
[0xa2e49d2]
[0xa398686]
[0xa2a7765]
[0xa2aafdd]
[0xabc1534]
[0xabb9c72]
[0x89dcccf]
[0x89e0bfd]
[0x89f950a]
[0x89a4dbe]
[0x89aeab5]
[0x8049c59]
[0xd27d8f8]
[0x8048131]
*** glibc detected *** ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.67_i686-pc-linux-gnu: munmap_chunk(): invalid pointer: 0x12d13f20 ***
======= Backtrace: =========
[0xd2aac45]
[0xd26bfe1]
[0xc9a1813]
[0xc967b46]
[0xc036fe7]
[0xc037be8]
[0x89a7898]
[0x89aeab5]
[0x8049c59]
[0xd27d8f8]
[0x8048131]
======= Memory map: ========
08048000-0dff8000 r-xp 00000000 08:01 133486 /var/lib/boinc-client/projects/boinc.bakerlab.org_rosetta/minirosetta_3.67_i686-pc-linux-gnu
0dff8000-0e001000 rw-p 05faf000 08:01 133486 /var/lib/boinc-client/projects/boinc.bakerlab.org_rosetta/minirosetta_3.67_i686-pc-linux-gnu
0e001000-0e304000 rw-p 00000000 00:00 0
0f98d000-131e1000 rw-p 00000000 00:00 0 [heap]
b4500000-b45b5000 rw-p 00000000 00:00 0
b45b5000-b4600000 ---p 00000000 00:00 0
b4600000-b46b6000 rw-p 00000000 00:00 0
b46b6000-b4700000 ---p 00000000 00:00 0
b4700000-b4800000 rw-p 00000000 00:00 0
b4900000-b49d7000 rw-p 00000000 00:00 0
b49d7000-b4a00000 ---p 00000000 00:00 0
b4a00000-b4b00000 rw-p 00000000 00:00 0
b4b00000-b4bfb000 rw-p 00000000 00:00 0
b4bfb000-b4c00000 ---p 00000000 00:00 0
b4c00000-b4d00000 rw-p 00000000 00:00 0
b4d00000-b4e00000 rw-p 00000000 00:00 0
b4f00000-b5000000 rw-p 00000000 00:00 0
b505f000-b5100000 rw-p 00000000 00:00 0
b5100000-b5200000 rw-p 00000000 00:00 0
b5300000-b5400000 rw-p 00000000 00:00 0
b549d000-b5741000 rw-p 00000000 00:00 0
b5741000-b5742000 ---p 00000000 00:00 0
b5742000-b6344000 rw-p 00000000 00:00 0 [stack:15704]
b6344000-b7658000 rw-s 00000000 08:01 134834 /var/lib/boinc-client/slots/6/boinc_minirosetta_6
b7658000-b7659000 ---p 00000000 00:00 0
b7659000-b765c000 rw-p 00000000 00:00 0 [stack:15686]
b765c000-b765e000 rw-s 00000000 08:01 134716 /var/lib/boinc-client/slots/6/boinc_mmap_file
b765e000-b775b000 rw-p 00000000 00:00 0
b775b000-b775c000 r-xp 00000000 00:00 0 [vdso]
bfac0000-bfaf1000 rw-p 00000000 00:00 0 [stack]
SIGABRT: abort called
Stack trace (16 frames):
[0xd1d9dff]
[0xb775b404]
[0xd2c86a0]
[0xd285880]
[0xd29f2db]
[0xd2aac45]
[0xd26bfe1]
[0xc9a1813]
[0xc967b46]
[0xc036fe7]
[0xc037be8]
[0x89a7898]
[0x89aeab5]
[0x8049c59]
[0xd27d8f8]
[0x8048131]

Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 19.6384448376039
Granted credit 0
application version 3.67

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Message boards : Number crunching : Minirosetta 3.62-3.65



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