Rosetta@Home version 3.31

Message boards : Number crunching : Rosetta@Home version 3.31

To post messages, you must log in.

Previous · 1 · 2 · 3 · 4

AuthorMessage
Nightwish
Avatar

Send message
Joined: 29 Mar 12
Posts: 10
Credit: 307,377
RAC: 0
Message 73377 - Posted: 6 Jul 2012, 5:46:21 UTC

Four Client errors in a row. Here's one: <core_client_version>7.0.25</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2012- 7- 5 21:25: 9:] :: BOINC:: Initializing ... ok.
[2012- 7- 5 21:25: 9:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev48292.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/T0722_ab_t000___dekim_06_13.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
# cpu_run_time_pref: 28800
[2012- 7- 5 22:44: 1:] :: BOINC:: Initializing ... ok.
[2012- 7- 5 22:44: 1:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev48292.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/T0722_ab_t000___dekim_06_13.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success!
# cpu_run_time_pref: 28800
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk4_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk5_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk6_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk7_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk8_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk9_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk10_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk11_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk12_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk13_fa ... success!
Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk14_fa ... success!
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005

</stderr_txt>
]]>
Validate state Invalid
Claimed credit 17.1638733855513
Granted credit 0
application version 3.31
FYI, Nightwish
ID: 73377 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
[AF>france>pas-de-calais]symaski62

Send message
Joined: 19 Sep 05
Posts: 47
Credit: 33,871
RAC: 0
Message 73382 - Posted: 7 Jul 2012, 6:47:54 UTC

problem ^^

https://boinc.bakerlab.org/rosetta/results.php?userid=506&offset=0

Tag::read - parse error, printing backtrace.

Tag::read - parse error - file:istream line:3 column:1 - </TASKOPERATIONS>
Tag::read - parse error - file:istream line:3 column:1 - ^

Tag::read - parse error - file:istream line:7 column:1 - </stage1>
Tag::read - parse error - file:istream line:7 column:1 - ^

Tag::read - parse error - file:istream line:10 column:1 - </stage2>
Tag::read - parse error - file:istream line:10 column:1 - ^

Tag::read - parse error - file:istream line:13 column:1 - </fullatom>
Tag::read - parse error - file:istream line:13 column:1 - ^

Tag::read - parse error - file:istream line:14 column:1 - </SCOREFXNS>
Tag::read - parse error - file:istream line:14 column:1 - ^

Tag::read - parse error - file:istream line:16 column:1 - </FILTERS>
Tag::read - parse error - file:istream line:16 column:1 - ^

Tag::read - parse error - file:istream line:20 column:1 - <Template pdb="input_t000__0_C1/3qupA_303_aln.cl0.pdb" weight=0.215731022402638 /work/robetta/jobs/19939/32293/01_01_cm/t000_/hybrid/cluster0.filt.dist_csts />
Tag::read - parse error - file:istream line:20 column:1 - ^

Tag::read - parse error - file:istream line:18 column:1 - <Hybridize name=hybridize stage1_scorefxn=stage1 stage2_scorefxn=stage2 fa_scorefxn=fullatom  batch=1 stage1_increase_cycles=1.0 stage2_increase_cycles=1.0 linmin_only=0>
Tag::read - parse error - file:istream line:18 column:1 - ^

Tag::read - parse error - file:istream line:17 column:1 - <MOVERS>
Tag::read - parse error - file:istream line:17 column:1 - ^

Tag::read - parse error - file:istream line:1 column:1 - <dock_design>
Tag::read - parse error - file:istream line:1 column:1 - ^


ERROR: false
ERROR:: Exit from: ......srcutilitytagTag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out

ID: 73382 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
P . P . L .

Send message
Joined: 20 Aug 06
Posts: 581
Credit: 4,865,274
RAC: 0
Message 73385 - Posted: 7 Jul 2012, 7:59:19 UTC

To all of you that are using BOINC 7.0.25 it is know to cause problems on many projects.

Why do you keep using it?

/ end of rant!

ID: 73385 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile robertmiles

Send message
Joined: 16 Jun 08
Posts: 1217
Credit: 13,359,660
RAC: 640
Message 73388 - Posted: 7 Jul 2012, 12:56:47 UTC - in response to Message 73385.  

To all of you that are using BOINC 7.0.25 it is know to cause problems on many projects.

Why do you keep using it?

/ end of rant!


Some of us are also running a very long workunit for another BOINC project - one that does not have checkpoints. I've downloaded 7.0.28 for this computer, but it will be around three weeks before a certain workunits reaches a point that allows me to install much of anything else.
ID: 73388 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
P . P . L .

Send message
Joined: 20 Aug 06
Posts: 581
Credit: 4,865,274
RAC: 0
Message 73392 - Posted: 7 Jul 2012, 22:02:24 UTC

Hi.

Had a four errors lastnight all the same type, on my two rigs after about 4sec running.


https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471483403

rb_07_06_32295_62986__t000__2_D3_SAVE_ALL_OUT_IGNORE_THE_REST_52023_1952_0

Tag::read - parse error - file:istream line:20 column:1 - <Template pdb="input_t000__2_D3/3njkA_301_aln.cl2.pdb" weight=0.325456341525636 /work/robetta/jobs/19939/32295/01_01_cm/t000_/hybrid/cluster2.filt.dist_csts symmdef="input_t000__2_D3/3njkA_301_D3.symm"/>
Tag::read - parse error - file:istream line:20 column:1 - ^

Tag::read - parse error - file:istream line:18 column:1 - <Hybridize name=hybridize stage1_scorefxn=stage1 stage2_scorefxn=stage2 fa_scorefxn=fullatom batch=1 stage1_increase_cycles=1.0 stage2_increase_cycles=1.0 linmin_only=0>
Tag::read - parse error - file:istream line:18 column:1 - ^

Tag::read - parse error - file:istream line:17 column:1 - <MOVERS>
Tag::read - parse error - file:istream line:17 column:1 - ^

Tag::read - parse error - file:istream line:1 column:1 - <dock_design>
Tag::read - parse error - file:istream line:1 column:1 - ^


ERROR: false
ERROR:: Exit from: src/utility/tag/Tag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>
====================================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471471165

rb_07_06_32294_62981__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_52018_625_1

====================================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471477518

rb_07_06_32294_62981__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52018_1638_0

====================================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471523340

rb_07_06_32297_62988__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_52030_2649_0

------------------------------------------------------------------------

ID: 73392 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
P . P . L .

Send message
Joined: 20 Aug 06
Posts: 581
Credit: 4,865,274
RAC: 0
Message 73393 - Posted: 7 Jul 2012, 23:22:33 UTC

Another five this morning with the same error as the others, from one of my rigs.


https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471519206

rb_07_06_32297_62988__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52030_1311_1

=======================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471519207

rb_07_06_32297_62988__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_52030_1570_1

======================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471516749

rb_07_06_32297_62988__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52030_694_1

=====================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471525586

rb_07_06_32298_62989__t000__3_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52032_2275_1

=====================================================

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471525107

rb_07_06_32298_62989__t000__1_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52032_682_1

-----------------------------------------------------------

ID: 73393 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
rhb

Send message
Joined: 19 Jan 07
Posts: 5
Credit: 277,050
RAC: 0
Message 73394 - Posted: 8 Jul 2012, 0:31:49 UTC

There are apparently still some bad workunits in the system. I just ran:

Task ID 517983290
Name rb_07_06_32293_62980__t000__3_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52024_1284_1
Workunit 471496494

which gave up after xml parsing errors:

https://boinc.bakerlab.org/rosetta/result.php?resultid=517983290

BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Tag::read - parse error, printing backtrace.

Tag::read - parse error - file:istream line:3 column:1 - </TASKOPERATIONS>
Tag::read - parse error - file:istream line:3 column:1 - ^

... etc.


Tag::read - parse error - file:istream line:1 column:1 - <dock_design>
Tag::read - parse error - file:istream line:1 column:1 - ^


ERROR: false
ERROR:: Exit from: src/utility/tag/Tag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out

ID: 73394 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
.clair.

Send message
Joined: 2 Jan 07
Posts: 202
Credit: 23,702,139
RAC: 5,103
Message 73405 - Posted: 8 Jul 2012, 20:46:39 UTC

I am geting the same errors with - rb_07_06
ID: 73405 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile robertmiles

Send message
Joined: 16 Jun 08
Posts: 1217
Credit: 13,359,660
RAC: 640
Message 73415 - Posted: 10 Jul 2012, 1:47:15 UTC - in response to Message 73405.  

I am geting the same errors with - rb_07_06


The last two of you might want to mention which version of BOINC you saw these errors under, and which operating system, in case that's a factor in the problem.
ID: 73415 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mad_Max

Send message
Joined: 31 Dec 09
Posts: 206
Credit: 19,172,500
RAC: 4,142
Message 73420 - Posted: 10 Jul 2012, 18:59:21 UTC
Last modified: 10 Jul 2012, 19:01:40 UTC

My team members report many errors(after 5-20 sec from start) on rb_07_06... series too.
(3 different computers + 3 "wingmans" computers from other teams, over 20/40 WUs/tasks)

With these tasks series clearly something is wrong.

And one new(i see such first time) strange glitch on one of comps:
https://boinc.bakerlab.org/rosetta/results.php?hostid=1515881

ALL WUs marked as invalid. Although judging by the logs, most of them have been completed successfully.
In what may be the problem? Errors in work of the validator?
From what we has already tried to do:
- 2 times reinstall BOINC client (version 7.0.25 was initially, then try a version 7.0.28, and at the end version 6.12.34)
- And full reset of the project.
Nothing has changed - same behavior and errors...
ID: 73420 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
[AF>france>pas-de-calais]symaski62

Send message
Joined: 19 Sep 05
Posts: 47
Credit: 33,871
RAC: 0
Message 73518 - Posted: 22 Jul 2012, 23:45:55 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=521080073

Tc680_fold_and_dock_d2_frank_intra_inter_cst_wt_4.0_52292_394_0

# cpu_run_time_pref: 86400
======================================================
DONE ::     1 starting structures  55103.1 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================
BOINC :: WS_max 0



hier, je regarde image :) => ne pas 2 de plus (starting structures)

erreur :)


ID: 73518 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1664
Credit: 6,533,949
RAC: 1,745
Message 73560 - Posted: 1 Aug 2012, 14:58:14 UTC

523135364
523135354

ERROR: ERROR: FragmentIO: could not open file aa0000109_05.200_v1_3
ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 233
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

ID: 73560 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Previous · 1 · 2 · 3 · 4

Message boards : Number crunching : Rosetta@Home version 3.31



©2022 University of Washington
https://www.bakerlab.org