Message boards : Number crunching : Minirosetta v1.39 bug thread
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Chu Send message Joined: 23 Feb 06 Posts: 120 Credit: 112,439 RAC: 0 |
Please report issues and bugs with Minirosetta v1.39 in this thread. In this update, we added two important applications, protein docking and protein folding with explicit metal ions. From the graphics, you probably can tell them by a structure with two different chain colors and a protein folding around a colored sphere, respectively. See the Rosett@home science section for more descriptions on these projects. |
Naesbye Send message Joined: 30 Jul 08 Posts: 5 Credit: 201,436 RAC: 0 |
Well, I did wonder why the date of the newspost was June 10th.....but apart from that, it seems to work fine. |
![]() ![]() Send message Joined: 16 Oct 05 Posts: 711 Credit: 26,694,507 RAC: 0 |
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googloo![]() Send message Joined: 15 Sep 06 Posts: 133 Credit: 22,441,278 RAC: 681 ![]() |
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![]() ![]() Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0 |
30.10.2008 1:46:22|rosetta@home|Computation for task abinitio_nohomfrag_70_A_1t2iA_4466_68269_0 finished 30.10.2008 1:46:22|rosetta@home|Output file abinitio_nohomfrag_70_A_1t2iA_4466_68269_0_0 for task abinitio_nohomfrag_70_A_1t2iA_4466_68269_0 absent Last days I saw such a bug also in ralph's minirosetta 1.39 |
Terrasapiens Send message Joined: 25 Apr 08 Posts: 15 Credit: 368,919 RAC: 0 |
As with the last couple of mini rosetta versions I've got several pages of results with nothing but WU failures, but on the rare occasion where the BOINC client sees fit to send rosetta 5.98 WUs those process just fine. See results: https://boinc.bakerlab.org/rosetta/results.php?userid=254884 |
Speedy![]() Send message Joined: 25 Sep 05 Posts: 163 Credit: 808,098 RAC: 4 |
Whats up with this? All of these tasks failed in the 1st 5 seconds have I done something wrong? Have a crunching good day!! |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Hi Speedy. application version 1.02 I don't think i've seen this app version here before! lucky you. ;) or not. pete. ![]() |
Speedy![]() Send message Joined: 25 Sep 05 Posts: 163 Credit: 808,098 RAC: 4 |
Hi Speedy. Hi Pete you are right about lucky me or not. Hope you are well Have a crunching good day!! |
Fishead Send message Joined: 3 Sep 08 Posts: 7 Credit: 89,566 RAC: 0 |
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185612716 This workunit just stopped immediately after it started it's computation. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185409243 This work unit had a similar problem, only it ran for 40 seconds. |
AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0 |
Had a problem with this WU on one of my Linux systems: relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart. The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart. The Boinc messages tab showed a very large number of messages like: ... Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139 Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project. Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139 Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project. Thu 30 Oct 2008 06:17:12 AM EDT||request_reschedule_cpus: process exited Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139 Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project. Thu 30 Oct 2008 06:18:02 AM EDT||request_reschedule_cpus: process exited ... |
Cathy Send message Joined: 15 Dec 06 Posts: 2 Credit: 426,420 RAC: 0 |
Minirosetta seems to finish it's work, but when I come home I have, literally, 181 processes running and 153 are minirosetta-related, most of them graphics. Plus, my computer is locked up and I have to either end ALL of the rosetta processes, plus a few others, or just reboot. This has never happened before. Do I need to disable my screensaver or download directx 10 compatibility? I am running XP, 2 gigahertz, 1 gb ram, plenty o' disk space, boinc client v 5.8.15. Should I update my boinc client? Your v 1.32 said it supported a lower version of boinc. |
JEklund Send message Joined: 24 Sep 06 Posts: 7 Credit: 105,447 RAC: 0 |
Had a problem with this WU on one of my Linux systems: Howdy, I had the same kind of (?) problem with Windows XP, there were sam ekind of messages like: 10/30/2008 10:12:49 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:12:49 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:14:07 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:14:07 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:14:07 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:15:18 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:15:18 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:15:18 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:16:23 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:16:23 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:16:23 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:17:28 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:17:28 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:17:29 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:18:34 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:18:34 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:18:34 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:19:37 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:19:37 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:19:38 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:20:39 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:20:39 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:20:39 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:21:39 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:21:39 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:21:39 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:22:40 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:22:40 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. 10/30/2008 10:22:41 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139 10/30/2008 10:23:41 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error. 10/30/2008 10:23:41 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer. .. So I aborted this WU .. -- Lundi -- |
![]() ![]() Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0 |
Hmm. It was buggy even while being a ralph. And now I still have a problems with 1.39: 10/31/08 01:06:24|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:08:25|ralph@home|Sending scheduler request: To fetch work. Requesting 27367 seconds of work, reporting 0 completed tasks 10/31/08 01:08:36|ralph@home|Scheduler request completed: got 0 new tasks 10/31/08 01:08:38|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:10:52|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:13:13|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:15:32|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:17:51|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:19:03|lhcathome|Sending scheduler request: To fetch work. Requesting 81986 seconds of work, reporting 0 completed tasks 10/31/08 01:19:08|lhcathome|Scheduler request completed: got 0 new tasks 10/31/08 01:20:06|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139 10/31/08 01:20:26|rosetta@home|Computation for task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 finished 10/31/08 01:20:26|rosetta@home|Output file abinitio_nohomfrag_70_A_2h28A_4466_96316_1_0 for task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 absent WinXP x64, BOINC 6.3.19 |
Mike Tyka Send message Joined: 20 Oct 05 Posts: 96 Credit: 2,190 RAC: 0 |
Thanks for posting, we've fixed that bug now! will be updating ralph and boinc in a few days. [quote][quote]Had a problem with this WU on one of my Linux systems: relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart. The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart. The Boinc messages tab showed a very large number of messages like: ... Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139 Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project. Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited http://beautifulproteins.blogspot.com/ http://www.miketyka.com/ |
Aegis Maelstrom Send message Joined: 29 Oct 08 Posts: 61 Credit: 2,137,555 RAC: 0 |
Hi, I'm pretty new here, yet my 1st report. :] Task ID 203599248, WU ID 185962994, Win XP Pentium M machine. I've got a computational error with following description: "(...)ERROR: in::file::zip minirosetta_database.zip does not exist!(...)" I have taken a look for such a file and it is non-existant. However, in C:Documents and SettingsAll UsersApplication DataBOINCprojectsboinc.bakerlab.org_rosetta I found a minirosetta_database_rev25321 file with a minirosetta_database folder inside. It looks like a mismatch between expected and actual name of the file. So far I've copied the (...)_rev25321 file and renamed a copy to minirosetta_database. Hope it will work next time. If it runs, I will halt it and wait for your feedback to avoid any messing with the data. EDIT: Copy trick did not work. The second WU got a "computational error" (Task ID 203661162) with the same description. Both were of a CASP8 type - I didn't have any such before. EDIT2: Seems to be the same as a report in a massage 56524 above and other similar. P.S. I've noticed that graphical Rosetta application occasionally shuts down. You need to restart it and goes all right. P.S.S. Second thing is that BOINC install wizard makes a couple of strange things, like creating a boinc_master folder in Documents and Settings. The folder does not hold any BOINC data (as I may see) however duplicates some previously existing data from personal folders. I know this is not your application, however it might potentially mess with file locations. I hope I will help somehow. :) Best regards. |
![]() Send message Joined: 16 Jun 08 Posts: 1227 Credit: 14,140,275 RAC: 238 |
Minirosetta seems to finish it's work, but when I come home I have, literally, 181 processes running and 153 are minirosetta-related, most of them graphics. Plus, my computer is locked up and I have to either end ALL of the rosetta processes, plus a few others, or just reboot. This has never happened before. Do I need to disable my screensaver or download directx 10 compatibility? I am running XP, 2 gigahertz, 1 gb ram, plenty o' disk space, boinc client v 5.8.15. Should I update my boinc client? Your v 1.32 said it supported a lower version of boinc. I don't know, but so far I've always used BOINC 5.10.45, as the WCG site requests for people also working on their projects. |
Cathy Send message Joined: 15 Dec 06 Posts: 2 Credit: 426,420 RAC: 0 |
Well, I took the plunge and updated my Boinc manager to v 6.2.19. I was afraid that projects wouldn't attach properly and/or other glitches but everything went extremely smoothly and mini-rosetta seems to work fine now. I did uninstall the old Boinc manager first and close out all unecessary programs. |
David Ball Send message Joined: 25 Nov 05 Posts: 25 Credit: 1,439,333 RAC: 0 |
I've got multiple machines erroring out WUs immediately with the following stdout: <core_client_version>6.2.19</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 74 called boinc_finish </stderr_txt> ]]> They're not able to get any more work. These are reliable, non-overclocked, HP Quads (Q6600) with 3 GB of memory each, running Vista Home Premium SP1 32 bit with all patches current. Have you read a good Science Fiction book lately? |
Odd Braathun Send message Joined: 2 Sep 08 Posts: 9 Credit: 16,125 RAC: 0 |
<core_client_version>6.2.19</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 74 called boinc_finish </stderr_txt> ]]> This seems to be a problem with the client Rosetta Mini with new score terms. I had 17 tasks of this type during Oct 31 and they all errored out after just a few secs. Problems are reported under Rosetta Mini with new score terms and Rosetta Mine with new score terms 1.02. Probably why they are not sending out new WUs. Strangely enough there is no info from the project. Just got a new task using the same client. But, time to completion 7:44:52. Darn, it errored out immediately. |
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Minirosetta v1.39 bug thread
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