Minirosetta v1.28 bug thread

Author	Message
David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0	Message 53624 - Posted: 11 Jun 2008, 6:09:25 UTC Last modified: 11 Jun 2008, 6:19:38 UTC Please post minirosetta v1.28 bugs/issues here. edit: The windows applications are no longer being compressed with UPX in order for the BOINC debugging utility (symbols store) to work. This version contains numerous updates/developments to the scientific protocols including abinitio, jumping, and loop modeling. It also contains a fix for the graphics application. ID: 53624 · Rating: 0 · rate: / Reply Quote

staffann Send message Joined: 7 Oct 07 Posts: 7 Credit: 69,937 RAC: 0	Message 53630 - Posted: 11 Jun 2008, 17:13:26 UTC I just had a minirosetta workunit fail on me. When I took a look at my computer I had a firewall (Zonelarm) popup saying that minirosetta 1.28 wanted to communicate with the internet and asked me whether to allow it. I don't know if it failed because it had to wait too long to communicate or if it tried to communicate because it failed... Anyway, here is the info: https://boinc.bakerlab.org/rosetta/result.php?resultid=170548447 2008-06-11 18:06:47\|rosetta@home\|Starting d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 2008-06-11 18:06:47\|rosetta@home\|Starting task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 using minirosetta version 128 2008-06-11 18:07:41\|rosetta@home\|Deferring communication for 1 min 0 sec 2008-06-11 18:07:41\|rosetta@home\|Reason: Unrecoverable error for result d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 ( - exit code -1073741819 (0xc0000005)) 2008-06-11 18:07:44\|rosetta@home\|Computation for task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 finished 2008-06-11 18:07:44\|rosetta@home\|Output file d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1_0 for task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 absent 2008-06-11 18:07:44\|rosetta@home\|Starting FRA_t411_CASP8_1QXN_3_IGNORE_THE_RESTt411_3_aamodel1.template_0003_3713_8105_0 ID: 53630 · Rating: 0 · rate: / Reply Quote

googloo Send message Joined: 15 Sep 06 Posts: 133 Credit: 22,659,384 RAC: 6,632	Message 53631 - Posted: 11 Jun 2008, 17:15:58 UTC Please, please, please post notices of new software versions to the Rosetta Application Version Release Log thread. ID: 53631 · Rating: 0 · rate: / Reply Quote

David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0	Message 53633 - Posted: 11 Jun 2008, 19:07:04 UTC - in response to Message 53631. Please, please, please post notices of new software versions to the Rosetta Application Version Release Log thread. did it. ID: 53633 · Rating: 0 · rate: / Reply Quote

Adam Send message Joined: 26 Jun 07 Posts: 7 Credit: 487,917 RAC: 0	Message 53636 - Posted: 11 Jun 2008, 23:01:31 UTC Last modified: 11 Jun 2008, 23:05:38 UTC Two compute errors https://boinc.bakerlab.org/rosetta/result.php?resultid=170520690 https://boinc.bakerlab.org/rosetta/result.php?resultid=170494775 Both are SIGBUS: bus error ID: 53636 · Rating: 0 · rate: / Reply Quote

Angus Send message Joined: 17 Sep 05 Posts: 412 Credit: 321,053 RAC: 0	Message 53638 - Posted: 12 Jun 2008, 1:30:44 UTC Hung WU at 100%, after 3:09:42 of processing time shown, on a one hour run time preference. CPU time not incrementing. Graphics would not open. After restarting BOINC, these messages. CPU Time reverted to 0:00:00, and Progess started over at 0%. 6/11/2008 6:19:59 PM\|rosetta@home\|[cpu_sched] Starting d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_4259_0(resume) 6/11/2008 6:19:59 PM\|rosetta@home\|Restarting task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_4259_0 using minirosetta version 128 BOINC 5.10.20 Win2K SP4 AMD XP2600 Basically, the box sat idle most of the day. I think I will abort all Mini WUs until (if?) they become stable. Proudly Banned from Predictator@Home and now Cosmology@home as well. Added SETI to the list today. Temporary ban only - so need to work harder :) "You can't fix stupid" (Ron White) ID: 53638 · Rating: 0 · rate: / Reply Quote

JChojnacki Send message Joined: 17 Sep 05 Posts: 71 Credit: 10,568,987 RAC: 6,229	Message 53641 - Posted: 12 Jun 2008, 4:24:35 UTC These two WU's failed. https://boinc.bakerlab.org/rosetta/result.php?resultid=170484604 https://boinc.bakerlab.org/rosetta/result.php?resultid=170480720 ID: 53641 · Rating: 0 · rate: / Reply Quote

caesar1987 Send message Joined: 28 Nov 06 Posts: 13 Credit: 22,268 RAC: 0	Message 53646 - Posted: 12 Jun 2008, 10:31:43 UTC Bug in grapnic http://caesar1987.px2.biz/subfolder/mix/imagebug.jpg http://caesar1987.px2.biz/subfolder/mix/imagebug2.jpg http://caesar1987.px2.biz/subfolder/mix/imagebug3.jpg ID: 53646 · Rating: 0 · rate: / Reply Quote

David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0	Message 53653 - Posted: 12 Jun 2008, 17:13:31 UTC These lines are expected for now. It's not a bug. They represent the "jumps" during the run. We will not display them in the future, like the rosetta++ graphics. ID: 53653 · Rating: 0 · rate: / Reply Quote

Azurrio Send message Joined: 20 Feb 06 Posts: 8 Credit: 237,979 RAC: 0	Message 53654 - Posted: 12 Jun 2008, 17:40:28 UTC A client error on this ID: 53654 · Rating: 0 · rate: / Reply Quote

WHopkins Send message Joined: 9 Aug 06 Posts: 2 Credit: 27,250 RAC: 0	Message 53666 - Posted: 13 Jun 2008, 11:51:52 UTC I updated to WINXP SP3 yesterday and Minirosetta 1.28 is failing at startup on ntdll.dll. AppName: minirosetta_1.28_windows_intelx86.exe AppVer: 0.0.0.0 ModName: ntdll.dll ModVer: 5.1.2600.5512 Offset: 00010193 ID: 53666 · Rating: 0 · rate: / Reply Quote

AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0	Message 53672 - Posted: 13 Jun 2008, 16:43:17 UTC The WU d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1867 bombed out in less than a second for both crunchers. ID: 53672 · Rating: 0 · rate: / Reply Quote

Krata Send message Joined: 25 Oct 05 Posts: 2 Credit: 17,084 RAC: 0	Message 53673 - Posted: 13 Jun 2008, 17:30:42 UTC Last modified: 13 Jun 2008, 17:31:42 UTC I still cannot manage to run minirosetta. The task seems to start however there is 0% cpu utilization and its not working at all. However, there is no error in log... I am running boinc 5.10.45 on Windows XP SP2, IBM T43. Other projects including standard Rosetta application (not minirosetta) are working well... PS I also tried to reset project and download files again... However it did not help. ID: 53673 · Rating: 0 · rate: / Reply Quote

Nothing But Idle Time Send message Joined: 28 Sep 05 Posts: 209 Credit: 139,545 RAC: 0	Message 53675 - Posted: 13 Jun 2008, 18:18:56 UTC I understood from the release log that 1.28 should eliminate unnecessary data base files. I completed two v1.28 tasks and I still have (now) 6 mini-rosetta databases totaling 76 MB. Delete doesn't work or doesn't work as I expect? ID: 53675 · Rating: 0 · rate: / Reply Quote

Jeremy Send message Joined: 15 May 08 Posts: 13 Credit: 2,636 RAC: 0	Message 53684 - Posted: 14 Jun 2008, 10:56:16 UTC (Almoust) all my Rosettamini tasks are failing again, just like with the previous versions. resultid=171215792 resultid=171206890 resultid=171001609 resultid=170828593 resultid=170797357 I'm switching to ralf not so i can get some Rosettabeta tasks. ID: 53684 · Rating: 0 · rate: / Reply Quote

netwraith Send message Joined: 3 Sep 06 Posts: 80 Credit: 13,483,227 RAC: 0	Message 53694 - Posted: 14 Jun 2008, 23:53:06 UTC Some weirdness here.... Ran for 12 hours ... only one decoy generated... large disparity between claim and grant... What could be up with this ??? https://boinc.bakerlab.org/rosetta/result.php?resultid=170945330 Validate state Valid Claimed credit 114.084575208418 Granted credit 3.82141254947678 application version 1.28 *Looking for a team ??? Join BoincSynergy!!* ID: 53694 · Rating: 0 · rate: / Reply Quote

Jeremy Send message Joined: 15 May 08 Posts: 13 Credit: 2,636 RAC: 0	Message 53699 - Posted: 15 Jun 2008, 9:20:49 UTC I had the same problem, it was taking about 2 hours to go from 96% to 97% done. Can't seem to find it in my results page. ID: 53699 · Rating: 0 · rate: / Reply Quote

Loki Send message Joined: 9 Dec 05 Posts: 9 Credit: 36,264 RAC: 0	Message 53700 - Posted: 15 Jun 2008, 10:22:31 UTC https://boinc.bakerlab.org/rosetta/result.php?resultid=170582737 Runtime reference were set to 2 hours. After 4 hours i looked into the graphics. The structure was not folded, a long pearl chain. I aborted the workunit. ID: 53700 · Rating: 0 · rate: / Reply Quote

Jack Shaftoe Send message Joined: 30 Apr 06 Posts: 115 Credit: 1,307,916 RAC: 0	Message 53730 - Posted: 16 Jun 2008, 22:59:54 UTC Last modified: 16 Jun 2008, 23:00:24 UTC https://boinc.bakerlab.org/workunit.php?wuid=155644697 ID: 53730 · Rating: 0 · rate: / Reply Quote

AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0	Message 53733 - Posted: 17 Jun 2008, 1:45:22 UTC Here's another bad d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_ ID: 53733 · Rating: 0 · rate: / Reply Quote