Minirosetta v1.28 bug thread

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Profile David E K
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Message 53624 - Posted: 11 Jun 2008, 6:09:25 UTC
Last modified: 11 Jun 2008, 6:19:38 UTC

Please post minirosetta v1.28 bugs/issues here.

edit: The windows applications are no longer being compressed with UPX in order for the BOINC debugging utility (symbols store) to work.

This version contains numerous updates/developments to the scientific protocols including abinitio, jumping, and loop modeling. It also contains a fix for the graphics application.
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Message 53630 - Posted: 11 Jun 2008, 17:13:26 UTC

I just had a minirosetta workunit fail on me. When I took a look at my computer I had a firewall (Zonelarm) popup saying that minirosetta 1.28 wanted to communicate with the internet and asked me whether to allow it. I don\'t know if it failed because it had to wait too long to communicate or if it tried to communicate because it failed...

Anyway, here is the info:

http://boinc.bakerlab.org/rosetta/result.php?resultid=170548447

2008-06-11 18:06:47|rosetta@home|Starting d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1
2008-06-11 18:06:47|rosetta@home|Starting task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 using minirosetta version 128
2008-06-11 18:07:41|rosetta@home|Deferring communication for 1 min 0 sec
2008-06-11 18:07:41|rosetta@home|Reason: Unrecoverable error for result d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 ( - exit code -1073741819 (0xc0000005))
2008-06-11 18:07:44|rosetta@home|Computation for task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 finished
2008-06-11 18:07:44|rosetta@home|Output file d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1_0 for task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1264_1 absent
2008-06-11 18:07:44|rosetta@home|Starting FRA_t411_CASP8_1QXN_3_IGNORE_THE_RESTt411_3_aamodel1.template_0003_3713_8105_0
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googloo
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Message 53631 - Posted: 11 Jun 2008, 17:15:58 UTC

Please, please, please post notices of new software versions to the Rosetta Application Version Release Log thread.
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Profile David E K
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Message 53633 - Posted: 11 Jun 2008, 19:07:04 UTC - in response to Message 53631.  

Please, please, please post notices of new software versions to the Rosetta Application Version Release Log thread.


did it.
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Adam

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Message 53636 - Posted: 11 Jun 2008, 23:01:31 UTC
Last modified: 11 Jun 2008, 23:05:38 UTC

Two compute errors
http://boinc.bakerlab.org/rosetta/result.php?resultid=170520690
http://boinc.bakerlab.org/rosetta/result.php?resultid=170494775
Both are SIGBUS: bus error
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Message 53638 - Posted: 12 Jun 2008, 1:30:44 UTC

Hung WU at 100%, after 3:09:42 of processing time shown, on a one hour run time preference.
CPU time not incrementing. Graphics would not open.

After restarting BOINC, these messages. CPU Time reverted to 0:00:00, and Progess started over at 0%.
6/11/2008 6:19:59 PM|rosetta@home|[cpu_sched] Starting d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_4259_0(resume)
6/11/2008 6:19:59 PM|rosetta@home|Restarting task d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_4259_0 using minirosetta version 128


BOINC 5.10.20 Win2K SP4 AMD XP2600

Basically, the box sat idle most of the day. I think I will abort all Mini WUs until (if?) they become stable.

Proudly Banned from Predictator@Home and now Cosmology@home as well. Added SETI to the list today. Temporary ban only - so need to work harder :)



"You can't fix stupid" (Ron White)
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Profile JChojnacki
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Message 53641 - Posted: 12 Jun 2008, 4:24:35 UTC

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Message 53646 - Posted: 12 Jun 2008, 10:31:43 UTC

Bug in grapnic

http://caesar1987.px2.biz/subfolder/mix/imagebug.jpg
http://caesar1987.px2.biz/subfolder/mix/imagebug2.jpg
http://caesar1987.px2.biz/subfolder/mix/imagebug3.jpg
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Profile David E K
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Message 53653 - Posted: 12 Jun 2008, 17:13:31 UTC

These lines are expected for now. It\'s not a bug. They represent the \"jumps\" during the run. We will not display them in the future, like the rosetta++ graphics.
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Message 53654 - Posted: 12 Jun 2008, 17:40:28 UTC

A client error on this
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Message 53666 - Posted: 13 Jun 2008, 11:51:52 UTC

I updated to WINXP SP3 yesterday and Minirosetta 1.28 is failing at startup on ntdll.dll.

AppName: minirosetta_1.28_windows_intelx86.exe
AppVer: 0.0.0.0
ModName: ntdll.dll
ModVer: 5.1.2600.5512
Offset: 00010193

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AMD_is_logical

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Message 53672 - Posted: 13 Jun 2008, 16:43:17 UTC

The WU d110a_BOINC_CASP8_ABRELAX_main_t405_IGNORE_THE_REST-S25-10-S3-9--d110a-_3740_1867 bombed out in less than a second for both crunchers.
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Message 53673 - Posted: 13 Jun 2008, 17:30:42 UTC
Last modified: 13 Jun 2008, 17:31:42 UTC

I still cannot manage to run minirosetta. The task seems to start however there is 0% cpu utilization and its not working at all. However, there is no error in log... I am running boinc 5.10.45 on Windows XP SP2, IBM T43. Other projects including standard Rosetta application (not minirosetta) are working well...

PS I also tried to reset project and download files again... However it did not help.
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Nothing But Idle Time

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Message 53675 - Posted: 13 Jun 2008, 18:18:56 UTC

I understood from the release log that 1.28 should eliminate unnecessary data base files. I completed two v1.28 tasks and I still have (now) 6 mini-rosetta databases totaling 76 MB. Delete doesn\'t work or doesn\'t work as I expect?
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Message 53684 - Posted: 14 Jun 2008, 10:56:16 UTC

(Almoust) all my Rosettamini tasks are failing again, just like with the previous versions.

resultid=171215792
resultid=171206890
resultid=171001609
resultid=170828593
resultid=170797357

I\'m switching to ralf not so i can get some Rosettabeta tasks.
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Message 53694 - Posted: 14 Jun 2008, 23:53:06 UTC

Some weirdness here....

Ran for 12 hours ... only one decoy generated...
large disparity between claim and grant...

What could be up with this ???

http://boinc.bakerlab.org/rosetta/result.php?resultid=170945330

Validate state Valid
Claimed credit 114.084575208418
Granted credit 3.82141254947678
application version 1.28

Looking for a team ??? Join BoincSynergy!!


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Message 53699 - Posted: 15 Jun 2008, 9:20:49 UTC

I had the same problem, it was taking about 2 hours to go from 96% to 97% done. Can\'t seem to find it in my results page.
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Message 53700 - Posted: 15 Jun 2008, 10:22:31 UTC

http://boinc.bakerlab.org/rosetta/result.php?resultid=170582737

Runtime reference were set to 2 hours. After 4 hours i looked into the graphics. The structure was not folded, a long pearl chain. I aborted the workunit.
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Profile Jack Shaftoe
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Message 53730 - Posted: 16 Jun 2008, 22:59:54 UTC
Last modified: 16 Jun 2008, 23:00:24 UTC

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AMD_is_logical

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Message 53733 - Posted: 17 Jun 2008, 1:45:22 UTC

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Message boards : Number crunching : Minirosetta v1.28 bug thread



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