minirosetta v1.25 bug thread

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James Thompson

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Message 53327 - Posted: 25 May 2008, 6:47:32 UTC

Please post minirosetta v1.25 bugs/issues here.
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Profile nouqraz

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Message 53333 - Posted: 25 May 2008, 14:23:56 UTC

http://boinc.bakerlab.org/rosetta/result.php?resultid=166371066

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database_rev21566.zip does not exist!
ERROR:: Exit from: ..\\..\\src\\apps\\public\\boinc\\minirosetta.cc line: 91
called boinc_finish

</stderr_txt>
]]>


looks like this task also failed on the other host(s) it got assigned to.
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Dr Who Fan
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Message 53336 - Posted: 25 May 2008, 19:42:39 UTC
Last modified: 25 May 2008, 19:43:26 UTC

Task failed for both users.

Task ID 166233408
Name t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3412_2_1
Workunit 151365943
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 229877
CPU time 0
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -description_file not found in command line top-level context

</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0
Granted credit 0
application version 1.25
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hugothehermit

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Message 53347 - Posted: 26 May 2008, 10:45:23 UTC
Last modified: 26 May 2008, 11:01:10 UTC

Something is wrong

Mine
Wingman

both <1 second with this error:


<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database_rev21566.zip does not exist!
ERROR:: Exit from: ..\\..\\src\\apps\\public\\boinc\\minirosetta.cc line: 91
called boinc_finish

</stderr_txt>
]]>

Edit:

I searched my computer and found

minirosetta_database_rev20421.zip
minirosetta_database_rev20940.zip
minirosetta_database_rev22619.zip
minirosetta_database_rev20940.zip

So you are not sending the \"minirosetta_database_rev21566.zip\" file properly, it would seem.

Though it seems strange to me that you want the 21566, when you have a 22619, but then again I have no idea what you are up to :)
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Helix Von Smelix

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Message 53348 - Posted: 26 May 2008, 12:11:55 UTC - in response to Message 53347.  

two of my PC\'s crash when they get to a 1.25 (and the earlier ones for that matter) They run 100% okay on 5.96.

Having to abort all 1.25 on them
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Profile nouqraz

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Message 53355 - Posted: 26 May 2008, 16:09:13 UTC

Two 1.25 units failed on this host after 12 seconds.

http://boinc.bakerlab.org/rosetta/result.php?resultid=166504595
http://boinc.bakerlab.org/rosetta/result.php?resultid=166500492


errors for each look about the same:
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
9 10000
3 9
1 3


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006F8BD0 read attempt to address 0x00000000

Engaging BOINC Windows Runtime Debugger...








This one failed almost immediately

http://boinc.bakerlab.org/rosetta/result.php?resultid=166371066

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database_rev21566.zip does not exist!
ERROR:: Exit from: ..\\..\\src\\apps\\public\\boinc\\minirosetta.cc line: 91
called boinc_finish

</stderr_txt>
]]>





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glaesum

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Message 53357 - Posted: 26 May 2008, 17:54:37 UTC

here\'s one: {using intel P4 with XP} & also wouldn\'t it help if this topic was pinned to the top of the message board??

resultid=166522181

26 May 2008 2:19:45 UTC
Received 26 May 2008 13:13:16 UTC
Outcome Client error
Client state Compute error
CPU time 12114.94
stderr out

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
<message>
<file_xfer_error>
<file_name>d110a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-7-S3-6--d110a-_3558_71_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>
Invalid

=================

other tasks are getting a non-fatal warning, an example:

Task ID 166593193
Name t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3571_5870_0
Workunit 152083437
Sent 26 May 2008 9:03:36 UTC
Received 26 May 2008 17:26:40 UTC
Server state Over
Outcome Success
Client state Done
CPU time 14333.23
stderr out

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
9 10000
3 9
1 3
# cpu_run_time_pref: 14400
======================================================
called boinc_finish

</stderr_txt>
]]>
Validate state Valid
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UPluto
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Message 53364 - Posted: 27 May 2008, 2:42:08 UTC

===============================================
http://boinc.bakerlab.org/rosetta/result.php?resultid=166524730
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
WU download error: couldn\'t get input files:
<file_xfer_error>
<file_name>aat391_09_05.200_v1_3.gz</file_name>
<error_code>-224</error_code>
<error_message>file not found</error_message>
</file_xfer_error>

</message>
]]>
===============================================
http://boinc.bakerlab.org/rosetta/result.php?resultid=166524638
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
WU download error: couldn\'t get input files:
<file_xfer_error>
<file_name>t405_boinc_aad110a10_05.200_v1_3.gz</file_name>
<error_code>-224</error_code>
<error_message>file not found</error_message>
</file_xfer_error>

</message>
]]>
===============================================

Thai BOINC Group
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Profile David Emigh
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Message 53367 - Posted: 27 May 2008, 3:53:14 UTC

This one failed in 0 seconds.

resultid=166731460

I was the wingman. This task failed for the original recipient also.
Rosie, Rosie, she's our gal,
If she can't do it, no one shall!
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l_mckeon

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Message 53372 - Posted: 27 May 2008, 6:28:28 UTC


Work unit IDs 149909834 and 149909750 failed immediately with computation errors on Rosetta mini 1.25 tasks.

Another 2 mini 1.25 WUs worked but with no graphics. I got black graphics windows which got a \"program not responding\" system message when I tried to close them.
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JordanWeber

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Message 53392 - Posted: 27 May 2008, 17:46:14 UTC

Minirosetta v1.25 STILL won\'t start on 1 of 3 computers (no longer 2) it hangs without starting (no CPU time accumulates). I will still have to cancel these jobs MANUALLY and INDIVIDUALLY. Could we please have an opt out for this sub-project?
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AMD_is_logical

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Message 53394 - Posted: 27 May 2008, 17:52:29 UTC

I have a lot of WUs of the type t0391_CASP8_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3564_* bombing out with \"Maximum disk usage exceeded\":

http://boinc.bakerlab.org/rosetta/result.php?resultid=166495834
http://boinc.bakerlab.org/rosetta/result.php?resultid=166488661
http://boinc.bakerlab.org/rosetta/result.php?resultid=166487176
http://boinc.bakerlab.org/rosetta/result.php?resultid=166464189
http://boinc.bakerlab.org/rosetta/result.php?resultid=166434885

I am allowing BOINC to use 100GB, so I assume this is due to the 100MB (or whatever) limit specified by the WU itself.

Below is a listing of the slot directory for a similar WU that is currently crunching:

-rw-r--r-- 1 nobody 200880 May 27 12:06 ClassicRelax_100_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:06 ClassicRelax_100_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:06 ClassicRelax_100_stage_3.pdb
-rw-r--r-- 1 nobody 6557 May 27 12:06 ClassicRelax_100_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 12:09 ClassicRelax_101_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:09 ClassicRelax_101_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:09 ClassicRelax_101_stage_2.pdb
-rw-r--r-- 1 nobody 6583 May 27 12:09 ClassicRelax_101_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 12:12 ClassicRelax_102_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:12 ClassicRelax_102_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:12 ClassicRelax_102_stage_3.pdb
-rw-r--r-- 1 nobody 6490 May 27 12:12 ClassicRelax_102_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 12:14 ClassicRelax_103_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:14 ClassicRelax_103_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:14 ClassicRelax_103_stage_2.pdb
-rw-r--r-- 1 nobody 6493 May 27 12:14 ClassicRelax_103_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 12:18 ClassicRelax_104_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:18 ClassicRelax_104_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:18 ClassicRelax_104_stage_2.pdb
-rw-r--r-- 1 nobody 6566 May 27 12:18 ClassicRelax_104_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_106_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_106_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_106_stage_2.pdb
-rw-r--r-- 1 nobody 6585 May 27 2008 ClassicRelax_106_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_108_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_108_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_108_stage_2.pdb
-rw-r--r-- 1 nobody 6530 May 27 2008 ClassicRelax_108_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_109_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_109_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_109_stage_3.pdb
-rw-r--r-- 1 nobody 6506 May 27 2008 ClassicRelax_109_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_110_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_110_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_110_stage_2.pdb
-rw-r--r-- 1 nobody 6563 May 27 2008 ClassicRelax_110_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_112_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_112_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_112_stage_2.pdb
-rw-r--r-- 1 nobody 6534 May 27 2008 ClassicRelax_112_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_113_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_113_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_113_stage_2.pdb
-rw-r--r-- 1 nobody 6551 May 27 2008 ClassicRelax_113_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_116_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_116_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_116_stage_2.pdb
-rw-r--r-- 1 nobody 6552 May 27 2008 ClassicRelax_116_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_118_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_118_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_118_stage_2.pdb
-rw-r--r-- 1 nobody 6549 May 27 2008 ClassicRelax_118_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_119_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_119_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_119_stage_3.pdb
-rw-r--r-- 1 nobody 6502 May 27 2008 ClassicRelax_119_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:15 ClassicRelax_11_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:15 ClassicRelax_11_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:15 ClassicRelax_11_stage_2.pdb
-rw-r--r-- 1 nobody 6564 May 27 08:15 ClassicRelax_11_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_120_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_120_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_120_stage_2.pdb
-rw-r--r-- 1 nobody 6508 May 27 2008 ClassicRelax_120_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_121_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_121_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_121_stage_3.pdb
-rw-r--r-- 1 nobody 6520 May 27 2008 ClassicRelax_121_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_122_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_122_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_122_stage_2.pdb
-rw-r--r-- 1 nobody 6568 May 27 2008 ClassicRelax_122_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_124_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_124_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 2008 ClassicRelax_124_stage_2.pdb
-rw-r--r-- 1 nobody 6525 May 27 2008 ClassicRelax_124_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:18 ClassicRelax_12_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:18 ClassicRelax_12_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:18 ClassicRelax_12_stage_2.pdb
-rw-r--r-- 1 nobody 6560 May 27 08:18 ClassicRelax_12_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:21 ClassicRelax_13_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:21 ClassicRelax_13_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:21 ClassicRelax_13_stage_2.pdb
-rw-r--r-- 1 nobody 6504 May 27 08:21 ClassicRelax_13_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:24 ClassicRelax_14_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:24 ClassicRelax_14_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:24 ClassicRelax_14_stage_2.pdb
-rw-r--r-- 1 nobody 6506 May 27 08:24 ClassicRelax_14_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:26 ClassicRelax_15_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:26 ClassicRelax_15_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:26 ClassicRelax_15_stage_2.pdb
-rw-r--r-- 1 nobody 6522 May 27 08:26 ClassicRelax_15_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:30 ClassicRelax_17_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:30 ClassicRelax_17_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:30 ClassicRelax_17_stage_3.pdb
-rw-r--r-- 1 nobody 6533 May 27 08:30 ClassicRelax_17_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:32 ClassicRelax_18_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:32 ClassicRelax_18_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:32 ClassicRelax_18_stage_3.pdb
-rw-r--r-- 1 nobody 6502 May 27 08:32 ClassicRelax_18_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:35 ClassicRelax_19_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:35 ClassicRelax_19_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:35 ClassicRelax_19_stage_2.pdb
-rw-r--r-- 1 nobody 6498 May 27 08:35 ClassicRelax_19_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 07:51 ClassicRelax_1_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 07:51 ClassicRelax_1_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 07:51 ClassicRelax_1_stage_2.pdb
-rw-r--r-- 1 nobody 6513 May 27 07:51 ClassicRelax_1_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:38 ClassicRelax_20_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:38 ClassicRelax_20_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:38 ClassicRelax_20_stage_2.pdb
-rw-r--r-- 1 nobody 6527 May 27 08:38 ClassicRelax_20_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:43 ClassicRelax_22_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:43 ClassicRelax_22_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:43 ClassicRelax_22_stage_2.pdb
-rw-r--r-- 1 nobody 6548 May 27 08:43 ClassicRelax_22_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:46 ClassicRelax_23_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:46 ClassicRelax_23_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:46 ClassicRelax_23_stage_2.pdb
-rw-r--r-- 1 nobody 6497 May 27 08:46 ClassicRelax_23_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:50 ClassicRelax_24_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:50 ClassicRelax_24_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:50 ClassicRelax_24_stage_2.pdb
-rw-r--r-- 1 nobody 6563 May 27 08:50 ClassicRelax_24_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:52 ClassicRelax_25_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:52 ClassicRelax_25_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:52 ClassicRelax_25_stage_3.pdb
-rw-r--r-- 1 nobody 6531 May 27 08:52 ClassicRelax_25_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:55 ClassicRelax_26_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:55 ClassicRelax_26_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:55 ClassicRelax_26_stage_3.pdb
-rw-r--r-- 1 nobody 6540 May 27 08:55 ClassicRelax_26_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:57 ClassicRelax_27_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:57 ClassicRelax_27_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:57 ClassicRelax_27_stage_3.pdb
-rw-r--r-- 1 nobody 6556 May 27 08:57 ClassicRelax_27_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 09:00 ClassicRelax_28_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 09:00 ClassicRelax_28_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 09:00 ClassicRelax_28_stage_2.pdb
-rw-r--r-- 1 nobody 6475 May 27 09:00 ClassicRelax_28_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 09:03 ClassicRelax_29_stage_2.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 09:03 ClassicRelax_29_stage_2.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 09:03 ClassicRelax_29_stage_2.pdb
-rw-r--r-- 1 nobody 6528 May 27 09:03 ClassicRelax_29_stage_2.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 07:53 ClassicRelax_2_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 07:53 ClassicRelax_2_stage_3.mc_low.pdb
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-rw-r--r-- 1 nobody 200880 May 27 12:04 ClassicRelax_99_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:04 ClassicRelax_99_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 12:04 ClassicRelax_99_stage_3.pdb
-rw-r--r-- 1 nobody 6518 May 27 12:04 ClassicRelax_99_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 200880 May 27 08:09 ClassicRelax_9_stage_3.mc_last.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:09 ClassicRelax_9_stage_3.mc_low.pdb
-rw-r--r-- 1 nobody 200880 May 27 08:09 ClassicRelax_9_stage_3.pdb
-rw-r--r-- 1 nobody 6555 May 27 08:09 ClassicRelax_9_stage_3.rng.state.gz
-rw-r--r-- 1 nobody 84 May 27 07:48 T0391_1CHIM.pdb.gz
-rw-r--r-- 1 nobody 90 May 27 07:48 aaT0391_chimera.loopfile
-rw-r--r-- 1 nobody 90 May 27 07:48 aat391_03_05.200_v1_3.gz
-rw-r--r-- 1 nobody 90 May 27 07:48 aat391_09_05.200_v1_3.gz
-rw-r--r-- 1 nobody 3 May 27 2008 boinc_checkpoint_count.txt
-rw-r--r-- 1 nobody 3 May 27 07:48 boinc_init_count.txt
-rw-r--r-- 1 nobody 0 May 27 07:48 boinc_lockfile
-rw-r--r-- 1 nobody 5711454 May 27 2008 default.out
-rw-r--r-- 1 nobody 139 May 27 07:48 default.out.gz
-rw-r--r-- 1 nobody 3145 May 27 07:48 init_data.xml
-rw-r--r-- 1 nobody 100 May 27 07:48 minirosetta_1.25_i686-pc-linux-gnu
drwxrwxr-x 7 nobody 1664 May 19 12:49 minirosetta_database
-rw-r--r-- 1 nobody 99 May 27 07:48 minirosetta_database_rev22619.zip
-rw-r--r-- 1 nobody 6559 May 27 2008 rng.state.gz
-rw-r--r-- 1 nobody 110 May 27 07:48 stderr.txt
-rw-r--r-- 1 nobody 23836 May 27 07:48 stdout.txt
-rw-r--r-- 1 nobody 80 May 27 07:48 t391_.fasta.gz
-rw-r--r-- 1 nobody 86 May 27 07:48 t391_.psipred_ss2.gz

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Helix Von Smelix

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Message 53395 - Posted: 27 May 2008, 18:04:19 UTC - in response to Message 53394.  

The two boxes i have the problem on are both Nvidia chipset pc\'s with 45nm processors. Don\'t know if that helps.

I would also like to be able to opt out of 1.25.

Since i havn\'t run 1.25 on these boxes they are stable. Just so you know they were both running four instances of CPDN. with no problem, and playing dvd\'s at the same time. Even if i underclock them they both still crash (restart) on 1.25

They are prime95 24 hour stable


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Adam

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Message 53406 - Posted: 28 May 2008, 1:57:54 UTC

Compute error, http://boinc.bakerlab.org/rosetta/result.php?resultid=166836598
Repeatedly says error writing.
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Profile Rabinovitch
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Message 53408 - Posted: 28 May 2008, 6:16:49 UTC

Hi everyone!

It looks that everything is OK on my home PC with minirisetta 1.25, but... Sometimes computations for a WU finished before the end of target CPU run time. I.e. target run time is 12 hours, but computation may take 6 or 7 hours. Results are sending to server, I receive my credits, but is such short run time ok?
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Jipsu

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Message 53410 - Posted: 28 May 2008, 11:46:03 UTC - in response to Message 53408.  

Hi everyone!

It looks that everything is OK on my home PC with minirisetta 1.25, but... Sometimes computations for a WU finished before the end of target CPU run time. I.e. target run time is 12 hours, but computation may take 6 or 7 hours. Results are sending to server, I receive my credits, but is such short run time ok?


It\'s ok, it\'s because application can\'t complete another model with the time it has remaining.

For example if computation of one model takes 7 hours then minirosetta thinks that second model would also need 7 hours, which exceeds your runtime preference by 2 hours so it submits the result(s) it has completed so far and requests another WU.

At least that\'s how I understand it, please correct me if I\'m wrong.
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Profile Tribaal
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Message 53413 - Posted: 28 May 2008, 15:50:32 UTC

Hi!

Some of my headless Linux x64 servers seem to have stranded WUs from time to time...
The workunit just stalls, the CPU is freed (\"top\" shows 3 running rosetta mini on a quad core), but it just never moves.

Please let me know how I can provide extra info (I can\'t seem to find the XML files people attach to their posts)

Keep crunshin\'

- Trib\'
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Loki

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Message 53431 - Posted: 29 May 2008, 5:42:47 UTC

Task ID 166675299
Name d110a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-11-S3-6--d110a-_3558_130_1
Workunit 152059622

stderr out

<core_client_version>5.10.30</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 9196.03 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>d110a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-11-S3-6--d110a-_3558_130_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>
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Speedy
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Message 53433 - Posted: 29 May 2008, 8:28:41 UTC

When the screensaver starts for app 1.25 my screen just goes blank, the tasks complete fine if i wiggle my mouse the desktop comes back fine. i am using boinc 5.10.45 the other apps 5.96 display the graphics just fine

Speedy
Have a crunching good day!!
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Jipsu

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Message 53434 - Posted: 29 May 2008, 10:35:56 UTC - in response to Message 53433.  

When the screensaver starts for app 1.25 my screen just goes blank, the tasks complete fine if i wiggle my mouse the desktop comes back fine. i am using boinc 5.10.45 the other apps 5.96 display the graphics just fine

Speedy


minirosetta doesn\'t have proper graphics yet. You could say that the graphics are still in beta stage, and I remember reading that they are looking into that issue you have.

I personally wouldn\'t even want to have minirosetta as a screen saver, at current state I think it\'s ugly. ;)
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Message boards : Number crunching : minirosetta v1.25 bug thread



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