Problems with Rosetta version 5.62

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Profile David E K
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Message 40234 - Posted: 2 May 2007, 21:44:14 UTC

Please post issues with version 5.62 here.
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komandar

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Message 40286 - Posted: 3 May 2007, 20:31:27 UTC - in response to Message 40234.  

Still no 64bit support ='(.
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Message 40290 - Posted: 3 May 2007, 23:22:20 UTC
Last modified: 3 May 2007, 23:35:51 UTC

I just started this project today, and it’s not going at all well so far. All three of the tasks I’ve begun errored out immediately: the output in the results says
<message>
process got signal 5
</message>
<stderr_txt>
dyld: rosetta_5.62_powerpc-apple-darwin Undefined symbols:
rosetta_5.62_powerpc-apple-darwin undefined reference to ___cxa_atexit expected to be defined in /usr/lib/libSystem.B.dylib
</stderr_txt>

I’m running several other BOINC projects with no problems on this host. The system is oldish, but appears to meet the posted requirements: Mac G4/733, 1 GB RAM, Mac OS v10.3.9, BOINC v5.4.9. I also have X11, so all the standard Unix libraries should be present—but I’m prepared to install whatever is necessary, within reason …

Any advice on how to get this app to run?
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Rhiju
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Message 40291 - Posted: 4 May 2007, 1:16:49 UTC - in response to Message 40290.  
Last modified: 4 May 2007, 1:18:53 UTC

Attention PowerPC Mac users
Unfortunately, the current rosetta@home version (5.62) doesn't work on all power-PC's.
It has to do with updates to the BOINC API code (out of our hands!), and we suspect that
it only involves users with Mac OS X 10.3.9, because we didn't see any problems on
our local powerPC machines or on our test server ralph.

David Kim and I are working on it, right now. If you want to help, please do attach your
project to ralph -- there will be an update to 5.63 later tonight that will (hopefully) fix the problem!


I just started this project today, and it’s not going at all well so far. All three of the tasks I’ve begun errored out immediately: the output in the results says
<message>
process got signal 5
</message>
<stderr_txt>
dyld: rosetta_5.62_powerpc-apple-darwin Undefined symbols:
rosetta_5.62_powerpc-apple-darwin undefined reference to ___cxa_atexit expected to be defined in /usr/lib/libSystem.B.dylib
</stderr_txt>

I’m running several other BOINC projects with no problems on this host. The system is oldish, but appears to meet the posted requirements: Mac G4/733, 1 GB RAM, Mac OS v10.3.9, BOINC v5.4.9. I also have X11, so all the standard Unix libraries should be present—but I’m prepared to install whatever is necessary, within reason …

Any advice on how to get this app to run?


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Rhiju
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Message 40292 - Posted: 4 May 2007, 1:18:41 UTC - in response to Message 40286.  

Working on it. For now, we're going to try linking the 32bit build to be the
64bit build -- not optimized, unfortunatley, but at least it should run!

Still no 64bit support ='(.


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MattDavis
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Message 40294 - Posted: 4 May 2007, 2:41:32 UTC

We appreciate your hard work.
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Odysseus

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Message 40295 - Posted: 4 May 2007, 4:05:03 UTC - in response to Message 40291.  

If you want to help, please do attach your project to ralph -- there will be an update to 5.63 later tonight that will (hopefully) fix the problem!

Sorry, I don’t know what you mean by “attach your project to ralph”. Is that a library? A repair utility? Where can I download it?

At any rate I’m at home now—the host in question is at work—so I won’t be able to do anything until tomorrow. (I’ll suspend the project first thing, to stop the flow of bad results at least, but I probably won’t have a chance to tinker with anything until mid-afternoon.)

If Mac OS 10.4.x and special libraries or auxiliary programs are needed here, I wish it would say so on the system-requirements page. I’d heard this was a reasonably Mac-friendly project …
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Message 40296 - Posted: 4 May 2007, 4:09:16 UTC

RALPH@home is the alpha project for Rosetta.

http://ralph.bakerlab.org/
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Profile David E K
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Message 40297 - Posted: 4 May 2007, 4:15:22 UTC

Odysseus,

This is a very recent problem we are having. We just released an updated application (version 5.62) but unfortunately this version is crashing on OSX 10.3.9. We are working on a fix now. Ralph is our test project,

http://ralph.bakerlab.org

We always test updates on ralph before releasing on rosetta@home but there are not enough mac participants (particularly w/ 10.3.9) to do thorough tests. Sorry for any inconvenience. We should have a stable release soon and the boinc client should automatically update when it is available.
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MattDavis
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Message 40301 - Posted: 4 May 2007, 7:18:13 UTC
Last modified: 4 May 2007, 7:18:33 UTC

Someone -1ed my helpful post above ;_;

I must have a stalker <3
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ramostol

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Message 40303 - Posted: 4 May 2007, 8:54:43 UTC - in response to Message 40297.  

We always test updates on ralph before releasing on rosetta@home but there are not enough mac participants (particularly w/ 10.3.9) to do thorough tests.


Well, I attached to Ralph to avoid such problems as this. But for a month now (after the public release of 5.59) I have got the message "No work from project", and I am simply unable to test your wus if you do not send me the necessary test files...

-- R. A. Mostol
MacOS 10.3.9
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Message 40314 - Posted: 4 May 2007, 14:49:35 UTC - in response to Message 40303.  

The great super cruncher god matt got -1'd? shame on the person who did that
We always test updates on ralph before releasing on rosetta@home but there are not enough mac participants (particularly w/ 10.3.9) to do thorough tests.


Well, I attached to Ralph to avoid such problems as this. But for a month now (after the public release of 5.59) I have got the message "No work from project", and I am simply unable to test your wus if you do not send me the necessary test files...

-- R. A. Mostol
MacOS 10.3.9


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Message 40320 - Posted: 4 May 2007, 17:33:38 UTC - in response to Message 40301.  

Someone -1ed my helpful post above ;_;

I must have a stalker <3


I help you out :D

+1
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hrebml

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Message 40321 - Posted: 4 May 2007, 17:51:36 UTC

Hi,

I've attached to Ralph and a new work unit is downloading.

Should I detach rosetta@home from BOINC, or would it somehow be useful for y'all to have that continue to run errors til this is straightened out?

Bests,

Herb
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Message 40322 - Posted: 4 May 2007, 17:54:55 UTC - in response to Message 40321.  

Hi,

I've attached to Ralph and a new work unit is downloading.

Should I detach rosetta@home from BOINC, or would it somehow be useful for y'all to have that continue to run errors til this is straightened out?

Bests,

Herb


I would set it to no new work and wait for the new app before switching it on again.

Anders n

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Odysseus

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Message 40338 - Posted: 4 May 2007, 20:15:48 UTC - in response to Message 40303.  

We always test updates on ralph before releasing on rosetta@home but there are not enough mac participants (particularly w/ 10.3.9) to do thorough tests.

Well, I attached to Ralph to avoid such problems as this. But for a month now (after the public release of 5.59) I have got the message "No work from project", and I am simply unable to test your wus if you do not send me the necessary test files...

Having got the impression from Rhiju’s postings that more Macs were wanted there, I attached my G4 as soon as I got the chance today. Evidently I was wrong, because I too am getting “No work from project” messages. Maybe there’s a reason, beyond ‘demographics’, that Mac users aren’t exactly queuing up to help …
Fri May  4 14:07:58 2007|ralph@home|Sending scheduler request to http://ralph.bakerlab.org/ralph_cgi/cgi
Fri May  4 14:07:58 2007|ralph@home|Reason: To fetch work
Fri May  4 14:07:58 2007|ralph@home|Requesting 86400 seconds of new work
Fri May  4 14:08:03 2007|ralph@home|Scheduler request succeeded
[color=red]Fri May  4 14:08:03 2007|ralph@home|No work from project[/color]
Fri May  4 14:08:03 2007|ralph@home|Deferring scheduler requests for 13 minutes and 42 seconds

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komandar

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Message 40340 - Posted: 4 May 2007, 20:26:45 UTC - in response to Message 40292.  
Last modified: 4 May 2007, 20:28:54 UTC

Working on it. For now, we're going to try linking the 32bit build to be the
64bit build -- not optimized, unfortunatley, but at least it should run!

Still no 64bit support ='(.


Hmm weird.
It does not work for me.
Here is a part from my message-window... maybe it will help you:

04.05.2007 22:22:04|rosetta@home|Master file download succeeded
04.05.2007 22:22:04|rosetta@home|Sending scheduler request: Project initialization
04.05.2007 22:22:04|rosetta@home|Requesting 1 seconds of new work
04.05.2007 22:22:05|rosetta@home|Scheduler RPC succeeded [server version 509]
04.05.2007 22:22:05|rosetta@home|Message from server: platform 'windows_x86_64' not found
04.05.2007 22:22:05|rosetta@home|New host venue: home
04.05.2007 22:22:05|rosetta@home|Deferring communication for 1 days 0 hr 0 min 0 sec
04.05.2007 22:22:05|rosetta@home|Reason: requested by project
04.05.2007 22:22:05|rosetta@home|Successfully attached to rosetta@home

I've got also the problem that I won't become any units from rosetta like the user above.
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Message 40341 - Posted: 4 May 2007, 21:40:31 UTC

Rosetta yet isnt sending work to the 64bit client.
However, it works on RALPH, but im also getting the "no work" message.
This brings me into a strange situation...
The PC, where i got XP x64 is a dual boot system together with normal XP, im owning only the 120 days trial version from xp pro atm. So when im in x64, all I can do at this moment is... wait to get a piece of the workcake, and meanwhile do nothing... When i switch back to Win XP 32, where i usualy cruch rosetta, im not able to get 64bit work ^_^

Can I run the exactly same installation, that usualy the 32bit windows is running inside the 64 bit windows, and even resume started workunits there ? or will i crash the WUs with that ? Then I would open both BOINC clients, cruniching rosetta and waiting for RALPH to send some work.
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Message 40348 - Posted: 5 May 2007, 2:28:20 UTC
Last modified: 5 May 2007, 2:42:58 UTC

My computer AMD64 x2 Kubuntu 7.04 running 5.62 32 bit linux client as anonymous platform.


stderr out <core_client_version>5.4.11</core_client_version>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 10800
# random seed: 2481505
SIGABRT: abort called
Stack trace (15 frames):
[0x8c9d71b]
[0x8c9854c]
[0xffffe500]
[0x8d086d4]
[0x8d1d5bf]
[0x8d22736]
[0x8d22903]
[0x8cf3331]
[0x8cf4d59]
[0x83d585b]
[0x8d08c1f]
[0x8c9a1df]
[0x8c9b7af]
[0x8c947e5]
[0x8d34cca]

Exiting...
Graphics are disabled due to configuration...
# cpu_run_time_pref: 10800
======================================================
DONE :: 1 starting structures 9690.17 cpu seconds
This process generated 8 decoys from 8 attempts
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
Validate state Valid

Every other single WU rosetta tried had failed and threw SIGABRT codes in the stderr. I upgraded to the 5.62 to give it a chance, and it threw the error, but claimed it completed and gave me credit. Is this valid? I took a look at some other user's results, and didn't see any abort codes
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Odysseus

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Message 40351 - Posted: 5 May 2007, 4:24:17 UTC

My G4 Mac got some RALPH@home work this evening; the first WU had an error (which I’ll post over there), but it appears to have got most of the way through the next one it received because now I see that it’s downloaded a third one.

Please excuse my peevish tone earlier; it hasn’t been a good week. :(
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Message boards : Number crunching : Problems with Rosetta version 5.62



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