Problems with Rosetta version 5.45
Message boards : Number crunching : Problems with Rosetta version 5.45
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 David E KVolunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
Please post problems with Rosetta@home 5.45 here. Like the previous version, we're interested in whether graphics-related crashes are reduced with this version. We hope there is a significant improvement in the stability of the graphics, and we've turned back on the display of sidechains and rotation of the protein. There are still issues with graphics on Mac ppc and intel platforms. Edit: The Mac graphics issues that we are still experiencing on local tests do not affect the main application. Sometimes the graphics thread may stall (the displayed cpu time in the graphics window does not increment) but please keep in mind that the rosetta application is still doing valid work - the work unit will still look like it is running okay in the boinc manager. If you come accross this situation, you may close the window or keep it open, however, once the window is closed, you will not be able to open it again for the particular work unit in progress. |
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alexpoon Send message Joined: 28 Dec 05 Posts: 6 Credit: 1,846 RAC: 0 |
Please post problems with Rosetta@home 5.45 here. Like the previous version, we're interested in whether graphics-related crashes are reduced with this version. We hope there is a significant improvement in the stability of the graphics, and we've turned back on the display of sidechains and rotation of the protein. There are still issues with graphics on Mac ppc and intel platforms. A very small problem, the description txt don't show in the graphic mode:D |
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Billy Send message Joined: 29 May 06 Posts: 13 Credit: 1,490,106 RAC: 443 |
Everything is running fine with iMac4,1 Core Duo and Boinc Manager 5.4.9. Not sure if this is a minor bug as I don't run Rosetta much. If I have the graphics window running and switch to another program, all is well. If I click on the graphics window, the window comes to the front as it should, but the menus stay with the other program, not Boinc. If I am in the other program and switch to Boinc, the graphics window closes. |
trevieze Send message Joined: 8 Apr 06 Posts: 10 Credit: 542,792 RAC: 0 |
Seems to be a problem with running a Poweredge 6450 and Centos 4.2. Two of the four process stopped at about 63 percent. I know this is vintage hardware, but I have another Poweredge running Windows 2003 RC2 and it runs fine. Maybe an OS switch is in order? |
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Chu Send message Joined: 23 Feb 06 Posts: 120 Credit: 112,439 RAC: 0 |
Your computers are hidden. Please post a link to your error results. Seems to be a problem with running a Poweredge 6450 and Centos 4.2. Two of the four process stopped at about 63 percent. I know this is vintage hardware, but I have another Poweredge running Windows 2003 RC2 and it runs fine. |
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trevieze Send message Joined: 8 Apr 06 Posts: 10 Credit: 542,792 RAC: 0 |
Your computers are hidden. Please post a link to your error results. I had to abort two process because they were stuck and way overtime. I believe they were due on Janurary 18th. I can't view WU back that far. |
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KuniaKid Send message Joined: 21 Dec 05 Posts: 2 Credit: 105,193 RAC: 0 |
version 5.45 won't download 1/31/2007 7:03:37 PM|rosetta@home|Started download of file rosetta_5.45_windows_intelx86.exe I've been getting this for a day or so. |
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Keith Akins Send message Joined: 22 Oct 05 Posts: 176 Credit: 71,779 RAC: 0 |
Just noticed that I have "Pending" granted credits. Is this new for 5.45? WU's appear to be completed successfully. |
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anders n Send message Joined: 19 Sep 05 Posts: 403 Credit: 537,991 RAC: 0 |
Just noticed that I have "Pending" granted credits. Is this new for 5.45? WU's appear to be completed successfully. The validator is not running. Se this page https://boinc.bakerlab.org/rosetta/rah_status.php Anders n 
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Chu Send message Joined: 23 Feb 06 Posts: 120 Credit: 112,439 RAC: 0 |
Thanks. We are aware of that and are looking into it right now. Just noticed that I have "Pending" granted credits. Is this new for 5.45? WU's appear to be completed successfully. |
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KuniaKid Send message Joined: 21 Dec 05 Posts: 2 Credit: 105,193 RAC: 0 |
I still can't get it to download.
Times are HST and this from different machine, same network:
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KWSN Sir Clark Send message Joined: 18 Sep 05 Posts: 46 Credit: 387,432 RAC: 0 |
Yep, me too........ Nevermind............just all went through :) 
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meshmar Send message Joined: 1 Apr 06 Posts: 26 Credit: 176,432 RAC: 0 |
I've started getting "Computation Error" for every Rosetta wu. the messages all show the same as the few below: 2/2/2007 6:20:28 PM|rosetta@home|Reason: Unrecoverable error for result 1who__BOINC_ABRELAX_NEWRELAXFLAGS_frags83__1521_4110_0 (No main program specified) 2/2/2007 6:20:30 PM|rosetta@home|Reason: Unrecoverable error for result 1louA_BOINC_ABRELAX_NEWRELAXFLAGS_frags83__1522_4982_0 (No main program specified) 2/2/2007 6:20:31 PM|rosetta@home|Reason: Unrecoverable error for result 1hz6A_BOINC_ABRELAX_NEWRELAXFLAGS_frags83__1521_4982_0 (No main program specified) 2/2/2007 6:20:32 PM|rosetta@home|Reason: Unrecoverable error for result 1acf__BOINC_ABRELAX_NEWRELAXFLAGS_frags83__1521_4983_0 (No main program specified) (No main program specified) ... Right now I have 37 of them on one system - which does neither you nor I any good at all. |
Gen_X_Accord Send message Joined: 5 Jun 06 Posts: 154 Credit: 279,018 RAC: 0 |
The granted credit is staring to look better. Maybe now I will have a chance to win the golden Chromosome Award. ;-) |
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Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Meshmar, which host are you having trouble with? Can you link us to a few of the result pages? Rosetta Moderator: Mod.Sense |
Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
Looks like Meshmar is getting: Exit status -185 (0xffffff47) Computer ID 371695 Report deadline 12 Feb 2007 2:57:25 UTC CPU time 0 stderr out <core_client_version>5.8.8</core_client_version> <![CDATA[ <message> No main program specified </message> ]]> Such as here: 60144263 Have you tried resetting the project? Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
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meshmar Send message Joined: 1 Apr 06 Posts: 26 Credit: 176,432 RAC: 0 |
That's the one Feet1st. I tried resetting - and it did the same for a batch more wu ... so now that system is happily working on Malaria and Tampaku. No idea why it suddenly decided it didn't like Rosetta. Every other system is still working on them with no issues ... |
EdMulock Send message Joined: 14 Mar 06 Posts: 30 Credit: 2,347,485 RAC: 0 |
Windows Vista, New Boinc 5.8.8 , server errors ???? 2/4/2007 4:38:22 PM|rosetta@home|[file_xfer] Throughput 21092 bytes/sec 2/4/2007 4:38:29 PM|rosetta@home|Starting 1b3aA_BOINC_ABRELAX_NEWRELAXFLAGS_frags83__1522_8018_0 2/4/2007 4:38:34 PM|rosetta@home|[error] Can't link projects/boinc.bakerlab.org_rosetta/rosetta_5.45_windows_intelx86.exe to slots/0/rosetta_5.45_windows_intelx86.exe 2/4/2007 4:38:36 PM|rosetta@home|Computation for task 1b3aA_BOINC_ABRELAX_NEWRELAXFLAGS_frags83__1522_8018_0 finished |
River~~ Send message Joined: 15 Dec 05 Posts: 761 Credit: 285,578 RAC: 0 |
The 'stuck at 100%' bug has returned with this result here. The prefferred run time had just been cut from 24hrs to 1hr to encourage Rosetta to make way for LHC (which rarely has work and which I therefore give highest priroity when it does have some), but instead this result hung having reached its new completion point. I don't know if I provoked it, or if it would have happened anyway at the end of the original run length. Either way I'd say it is a bug, tho obviously less serious of it only occurs with a shortened run. For others who see this, the best fix I have found is to stop BOINC and restart it, which then pushes the stuck task to start uploading. edit add: BTW - in response to your question in the first posting in this thread, this box has no graphics (not even an X-server) so it is not a gfx bug (unless the bug is that the windup code goes looking for the gfx...) edit 2 add and two more examples here and here, all different boxes, all running Linux, all stopped at 100% after run time shortened. This is clearly relevant as it caused the watchdog message to appear, but what I still say is a bug is that the watchdog seems to make the result stick instead of ending properly. R~~ 
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EdMulock Send message Joined: 14 Mar 06 Posts: 30 Credit: 2,347,485 RAC: 0 |
What's this mean ? 2/4/2007 11:25:38 PM||[error] Can't create HTTP response output file projects/boinc.bakerlab.org_rosetta/rosetta_5.45_windows_intelx86.exe 2/4/2007 11:25:44 PM||[error] Can't create HTTP response output file projects/boinc.bakerlab.org_rosetta/rosetta_5.45_windows_intelx86.exe 2/4/2007 11:25:50 PM||[error] Can't create HTTP response output file projects/boinc.bakerlab.org_rosetta/rosetta_5.45_windows_intelx86.exe 2/4/2007 11:25:56 PM||[error] Can't create HTTP response output file projects/boinc.bakerlab.org_rosetta/rosetta_5.45_windows_intelx86.exe 2/4/2007 11:25:56 PM|rosetta@home|Backing off 10 min 27 sec on download of file rosetta_5.45_windows_intelx86.exe |
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Number crunching :
Problems with Rosetta version 5.45
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