Message boards : Number crunching : Rosetta Beta 6.00
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Sid Celery Send message Joined: 11 Feb 08 Posts: 2144 Credit: 41,550,899 RAC: 9,975 |
I don't know what your settings are but I'm getting nearly 100% valid tasks here on my both Windows and Linux pc;s.Me too. Send more betas. Some Robetta tasks - non-Beta - sneaking through atm. Hardly any tbh, but not quite nothing |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2144 Credit: 41,550,899 RAC: 9,975 |
I don't know what your settings are but I'm getting nearly 100% valid tasks here on my both Windows and Linux pc;s.Me too. Send more betas. Sneaking a few new8v Beta tasks now but similarly hard to come by |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
I think that the 6.xx branch of code makes the same things as the 4.xx plus other things. Still |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1729 Credit: 18,451,410 RAC: 20,088 |
Current batch of Beta tasks have the same naming convention as Rosetta 4.20, and use a similar amount of RAM. Roughly 1.2GB of RAM required per Task. Also running for around 8 hours, not the previous Task runtime of around 3hrs. Grant Darwin NT |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
Current batch of Beta tasks have the same naming convention as Rosetta 4.20, and use a similar amount of RAM. And seems there are problems with the graphic... |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
Some errors 1552811222, 1552784491, etc ERROR: Error in protocols::cyclic_peptide_predict::SimpleCycpepPredictpplication::set_up_n_to_c_cyclization_mover() function: residue 1 does not have a LOWER_CONNECT. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1729 Credit: 18,451,410 RAC: 20,088 |
Yep, another group of faulty Tasks in with the current batch. Grant Darwin NT |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
Yep, another group of faulty Tasks in with the current batch. Today a lot of wus with this error: residue 1 does not have a LOWER_CONNECT |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1729 Credit: 18,451,410 RAC: 20,088 |
New batch, same problem. Grant Darwin NT |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
New batch, same problem. A little debug from admins is welcome. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
ERROR: Error in protocols::cyclic_peptide_predict::SimpleCycpepPredictpplication::set_up_n_to_c_cyclization_mover() function: residue 1 does not have a LOWER_CONNECT. Still the same error. After 2 months. Seems there is no debug of errors... |
Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 26,499,247 RAC: 17,359 |
A bug report (in the unlikely event that one of the developers still read forum and decides to fix some of the bugs). On one of my computers (this one: https://boinc.bakerlab.org/rosetta/results.php?hostid=1211592) ALL, without exception, tasks for the Rosetta Beta 6.xx application end with an error at the 1st minute of operation. The error is always the same: Unhandled Exception Detected... This is a fairly old, but still decent and stable computer running on an AMD Phenom II X6 processor (6 physical cores) and 16 GB of RAM Tasks for Rosetta 4.x are performed on it without any problems (except for faulty tasks that cause errors on all computers like famous "CHI angle" or "residue LOWERCONNECT" errors) as well as many(thousands - literally) tasks for several other DC projects: Einstein@Home, World Community Grid, SiDock@Home. This has been going on for several months by now (starting from Rosetta beta version 6.03, I think, because I've seen some valid WUs with early versions from the 6.x branch on this computer), killing many hundreds of WUs. During this time, there were several computer reboots and I reset the project twice (this includes re-downloading of all executable files and data files). Without changes. I do not think that the problem is in the software configuration, because on other computers I have not just a similar, but almost identical setup (originally obtained by cloning the system disk from this one). The main difference is that other computers have newer processors installed - also from AMD but from newer generations - Ryzen 7 2700 and Ryzen 5 5600X on which the Rosetta 6.xx application works without problems with same SW setup. So one of the versions of the error causes is that the application is trying to use one of the new instruction sets (AVX maybe? or other never CPU features which old Phenom series lacking ) without proper verification of their availability causing errors on older CPUs. It would be nice if someone from the owners of the old processors (like a Phenom or Core 2 DUO/QUAD) check this. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
Yesterday, a new kind of wus "test_asx_single_". All errors after few seconds ERROR: The residue ASX could not be generated. Has a suitable params file been loaded? (Note that custom params files not in the Rosetta database can be loaded with the -extra_res or -extra_res_fa command-line flags.) |
Dennis Walker Send message Joined: 8 Mar 20 Posts: 1 Credit: 1,265,744 RAC: 410 |
I also have an old computer that cannot run the Beta 6.4 tasks but is fine for the 4.x tasks. Name 8a_hal_k_hal_8aa_2jp2703_d31_1_0001_SAVE_ALL_OUT_2978406_105_0 Workunit 1403453387 Created 25 Jun 2024, 12:04:52 UTC Sent 25 Jun 2024, 12:29:47 UTC Report deadline 28 Jun 2024, 12:29:47 UTC Received 25 Jun 2024, 13:31:34 UTC Server state Over Outcome Computation error Client state Compute error Exit status -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION ... <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> (unknown error) - exit code 3221225477 (0xc0000005)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.04_windows_x86_64.exe @8a_hal_k_hal_8aa_2jp2703_d31_1_0001.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 Using database: database_0f7f01a1b07database Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00007FF6296448CC read attempt to address 0xFFFFFFFF ... (address may vary) Reason: Access Violation (0xc0000005) at address 0x000000000000000F CPU type AuthenticAMD AMD Athlon(tm) 64 X2 Dual Core Processor 4400+ [Family 15 Model 107 Stepping 1] Number of processors 2 Coprocessors AMD ATI Radeon HD 5400/R5 210 series (Cedar) (2048MB) driver: 1.4.1848 OpenCL: 1.2 - Stopped using my computer from 1994 (free WIN95 upgrade) after 28 years. Outlived WIN98, XP, Vista computers. |
Tern Send message Joined: 25 Oct 05 Posts: 576 Credit: 4,695,450 RAC: 1 |
Most projects let you choose whether you want to run beta applications or not. That was 4/2023, now it's 6/2024, and this still hasn't been fixed? I came back wanting to run more Rosetta, but I'm getting 90% "beta" tasks that I don't want. What happened to this being the best-run, best-communication, project on BOINC? Now it seems more like SZTAKI... |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
What happened to this being the best-run, best-communication, project on BOINC? Now it seems more like SZTAKI... You're here, like me, for more than 15 years. At the beginning there was a thread like "David Baker's Rosetta@home journal" (closed in 2017), the last news in the home page is June 2022, etc. Maybe more "interaction" with volunteers can attract more people (and, listening us, to have a better app). Maybe r@h became only a "divertissement" for IPD? I don't think so, 'cause they would not be developing a new app as they are doing on Ralph. But the lack of comunication is frustrating |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,790,281 RAC: 4,437 |
New app (6.06) errors also on linux <message> |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1729 Credit: 18,451,410 RAC: 20,088 |
So far every 6.06 Task has errored out- none even making it to 1min 30 sec. <core_client_version>8.0.2</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_windows_x86_64.exe @hal_8a_p_hal_8aa_3jp6519_d160_0001_1.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1560302 Using database: database_f5ae1de8e1database ERROR: Unable to find desired residue 'PHE' with variant 'SIDECHAIN_CONJUGATION'. Attempted to add target variant(s) to ResidueType using both ResidueType base name 'PHE' and base ResidueType. Was attempting to add new variant type 'SIDECHAIN_CONJUGATION' ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 980 BOINC:: Error reading and gzipping output datafile: default.out 03:15:20 (2416): called boinc_finish(1) </stderr_txt> ]]> Grant Darwin NT |
Jean-David Beyer Send message Joined: 2 Nov 05 Posts: 197 Credit: 6,613,600 RAC: 5,017 |
Me too. It downloads me 17 tasks at a time, and they all error out almost immediately. This on my Linux machine. I just set to get no more tasks. While not identical, they all fail in a similar way. Here is one of them: Task 1581485824 Name hal_8a_q_hal_8aa_3jp3179_d157_2_0001_1_SAVE_ALL_OUT_2979144_1_1 Workunit 1407312834 Created 16 Aug 2024, 15:02:43 UTC Sent 16 Aug 2024, 15:08:33 UTC Report deadline 19 Aug 2024, 15:08:33 UTC Received 16 Aug 2024, 21:53:02 UTC Server state Over Outcome Computation error Client state Compute error Exit status 1 (0x00000001) Unknown error code Computer ID 5910575 Run time 19 sec CPU time 1 sec Validate state Invalid Credit 0.00 Device peak FLOPS 6.06 GFLOPS Application version Rosetta Beta v6.06 x86_64-pc-linux-gnu Peak working set size 120.74 MB Peak swap size 237.00 MB Peak disk usage 23.86 MB Stderr output <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255)</message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu @hal_8a_q_hal_8aa_3jp3179_d157_2_0001_1.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1949704 Using database: database_f5ae1de8e1/database ERROR: Unable to find desired residue 'LEU' with variant 'SIDECHAIN_CONJUGATION'. Attempted to add target variant(s) to ResidueType using both ResidueType base name 'LEU' and base ResidueType. Was attempting to add new variant type 'SIDECHAIN_CONJUGATION' ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 980 BOINC:: Error reading and gzipping output datafile: default.out 11:11:55 (1424400): called boinc_finish(1) </stderr_txt> ]]> |
Jean-David Beyer Send message Joined: 2 Nov 05 Posts: 197 Credit: 6,613,600 RAC: 5,017 |
Same problem on my Windows 11 machine. |
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Number crunching :
Rosetta Beta 6.00
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