New kind of app on Ralph

Message boards : Number crunching : New kind of app on Ralph

To post messages, you must log in.

1 · 2 · 3 · 4 · Next

AuthorMessage
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100616 - Posted: 12 Feb 2021, 15:07:35 UTC
Last modified: 12 Feb 2021, 15:26:19 UTC

In Apps page of Ralph, appears this app:
"rosetta python projects"  - Linux running on an AMD x86_64 or Intel EM64T CPU 	0.00 (vbox64)

It's the first time i see virtualbox in Rosetta
Waiting for wus to test and for more info about this app
ID: 100616 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile dcdc

Send message
Joined: 3 Nov 05
Posts: 1735
Credit: 99,551,482
RAC: 19,108
Message 100617 - Posted: 12 Feb 2021, 18:56:41 UTC - in response to Message 100616.  
Last modified: 12 Feb 2021, 18:58:47 UTC

Interesting! Wonder if this relates to the work done since CASP on replicating/building on alphafold's methods?

I'll start upgrading BOINC to the vbox version on my machines just in case.
ID: 100617 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100618 - Posted: 13 Feb 2021, 8:41:54 UTC - in response to Message 100617.  

Interesting! Wonder if this relates to the work done since CASP on replicating/building on alphafold's methods?

Maybe.
Waiting for wus... and for info
ID: 100618 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100633 - Posted: 18 Feb 2021, 9:15:20 UTC - in response to Message 100617.  

I'll start upgrading BOINC to the vbox version on my machines just in case.

Today they update the app (version 0.01) and released the first batch of work (app is only for linux), very little batch (40 wus).
Waiting for more consistent batch and, maybe, for a windows version
ID: 100633 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile dcdc

Send message
Joined: 3 Nov 05
Posts: 1735
Credit: 99,551,482
RAC: 19,108
Message 100635 - Posted: 18 Feb 2021, 20:01:13 UTC
Last modified: 18 Feb 2021, 20:04:18 UTC

It says there's 46 python tasks running through the pipes at the moment.

You beat my to it- I didn't refresh the page before posting.
ID: 100635 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100636 - Posted: 18 Feb 2021, 21:21:02 UTC - in response to Message 100635.  

It says there's 46 python tasks running through the pipes at the moment.

They also update the version to 0.05
ID: 100636 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100645 - Posted: 23 Feb 2021, 17:30:31 UTC - in response to Message 100636.  

They also update the version to 0.05

The version, now, is 0.06, but no work...
ID: 100645 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100646 - Posted: 24 Feb 2021, 9:17:18 UTC

Today they released the 0.07 version, with Windows support.
No info about this app, in any case...
ID: 100646 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100654 - Posted: 25 Feb 2021, 15:18:05 UTC - in response to Message 100646.  

Today they released the 0.07 version, with Windows support.

The 0.08 version is out.
Waiting for consistent queue to test...
ID: 100654 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100709 - Posted: 10 Mar 2021, 7:14:00 UTC

0.09 version released, but still no work to test this app...
ID: 100709 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100711 - Posted: 11 Mar 2021, 6:21:18 UTC - in response to Message 100709.  

0.09 version released, but still no work to test this app...

Now the version is 0.12
ID: 100711 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Jim1348

Send message
Joined: 19 Jan 06
Posts: 718
Credit: 48,842,432
RAC: 31,424
Message 100714 - Posted: 12 Mar 2021, 2:11:01 UTC - in response to Message 100711.  

Now it is 0.15.

I wonder if it includes the AI stuff?
ID: 100714 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100715 - Posted: 12 Mar 2021, 6:25:00 UTC - in response to Message 100714.  

I wonder if it includes the AI stuff?

Maybe.
But admins are silent
ID: 100715 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100744 - Posted: 15 Mar 2021, 19:42:36 UTC

Crunched my first correct python wus: 5310401
6hs runtime target, 75 minutes of calculation
<stderr_txt>
2021-03-15 19:13:16 (1548): Detected: vboxwrapper 26202
2021-03-15 19:13:16 (1548): Detected: BOINC client v7.16.11
2021-03-15 19:13:17 (1548): Detected: VirtualBox VboxManage Interface (Version: 6.1.18)
2021-03-15 19:13:17 (1548): Feature: Checkpoint interval offset (93 seconds)
2021-03-15 19:13:17 (1548): Detected: Minimum checkpoint interval (600.000000 seconds)
2021-03-15 19:13:18 (1548): Create VM. (boinc_4c618273922dd2a4, slot#17)
2021-03-15 19:13:19 (1548): Setting Memory Size for VM. (6144MB)
2021-03-15 19:13:19 (1548): Setting CPU Count for VM. (1)
2021-03-15 19:13:19 (1548): Setting Chipset Options for VM.
2021-03-15 19:13:19 (1548): Setting Boot Options for VM.
2021-03-15 19:13:20 (1548): Setting Network Configuration for NAT.
2021-03-15 19:13:20 (1548): Disabling VM Network Access.
2021-03-15 19:13:20 (1548): Disabling USB Support for VM.
2021-03-15 19:13:20 (1548): Disabling COM Port Support for VM.
2021-03-15 19:13:21 (1548): Disabling LPT Port Support for VM.
2021-03-15 19:13:21 (1548): Disabling Audio Support for VM.
2021-03-15 19:13:21 (1548): Disabling Clipboard Support for VM.
2021-03-15 19:13:21 (1548): Disabling Drag and Drop Support for VM.
2021-03-15 19:13:22 (1548): Adding storage controller(s) to VM.
2021-03-15 19:13:22 (1548): Adding virtual disk drive to VM. (vm_image.vdi)
2021-03-15 19:13:22 (1548): Adding VirtualBox Guest Additions to VM.
2021-03-15 19:13:23 (1548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2021-03-15 19:13:23 (1548): Enabling shared directory for VM.
2021-03-15 19:13:23 (1548): Starting VM using VBoxManage interface. (boinc_4c618273922dd2a4, slot#17)
2021-03-15 19:13:27 (1548): Successfully started VM. (PID = '9340')
2021-03-15 19:13:27 (1548): Reporting VM Process ID to BOINC.
2021-03-15 19:13:27 (1548): Guest Log: BIOS: VirtualBox 6.1.18
2021-03-15 19:13:27 (1548): Guest Log: CPUID EDX: 0x178bfbff
2021-03-15 19:13:27 (1548): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63
2021-03-15 19:13:27 (1548): VM state change detected. (old = 'poweredoff', new = 'running')
2021-03-15 19:13:27 (1548): Preference change detected
2021-03-15 19:13:27 (1548): Setting CPU throttle for VM. (100%)
2021-03-15 19:13:28 (1548): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2021-03-15 19:13:29 (1548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2021-03-15 19:13:29 (1548): Guest Log: BIOS: Booting from Hard Disk...
2021-03-15 19:13:36 (1548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2021-03-15 19:13:36 (1548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2021-03-15 19:13:39 (1548): Guest Log: VBoxService 5.2.42 r137960 (verbosity: 0) linux.amd64 (May 13 2020 21:45:13) release log
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000126 main Log opened 2021-03-15T19:13:38.331434000Z
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000195 main OS Product: Linux
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000212 main OS Release: 4.19.0-14-amd64
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000226 main OS Version: #1 SMP Debian 4.19.171-2 (2021-01-30)
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000240 main Executable: /opt/VBoxGuestAdditions-5.2.42/sbin/VBoxService
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000241 main Process ID: 541
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000241 main Package type: LINUX_64BITS_GENERIC
2021-03-15 19:13:39 (1548): Guest Log: 00:00:00.000682 main 5.2.42 r137960 started. Verbose level = 0
2021-03-15 19:13:49 (1548): Guest Log: 00:00:10.016289 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 495 082 000ns (GuestNow=1 615 832 029 846 741 000 ns GuestLast=1 615 835 618 341 823 000 ns fSetTimeLastLoop=true )
2021-03-15 19:16:08 (1548): VM state change detected. (old = 'running', new = 'paused')
2021-03-15 19:16:09 (1548): VM state change detected. (old = 'paused', new = 'running')
2021-03-15 19:16:12 (1548): VM state change detected. (old = 'running', new = 'paused')
2021-03-15 19:16:13 (1548): VM state change detected. (old = 'paused', new = 'running')
2021-03-15 19:18:46 (1548): Preference change detected
2021-03-15 19:18:46 (1548): Setting CPU throttle for VM. (100%)
2021-03-15 19:18:47 (1548): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2021-03-15 19:19:06 (1548): Preference change detected
2021-03-15 19:19:06 (1548): Setting CPU throttle for VM. (100%)
2021-03-15 19:19:07 (1548): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2021-03-15 19:25:02 (1548): Creating new snapshot for VM.
2021-03-15 19:25:17 (1548): Checkpoint completed.
2021-03-15 19:35:21 (1548): Creating new snapshot for VM.
2021-03-15 19:35:38 (1548): Deleting stale snapshot.
2021-03-15 19:35:38 (1548): Checkpoint completed.
2021-03-15 19:40:15 (1548): Preference change detected
2021-03-15 19:40:15 (1548): Setting CPU throttle for VM. (100%)
2021-03-15 19:40:15 (1548): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2021-03-15 19:40:41 (1548): Preference change detected
2021-03-15 19:40:41 (1548): Setting CPU throttle for VM. (100%)
2021-03-15 19:40:42 (1548): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2021-03-15 19:45:42 (1548): Creating new snapshot for VM.
2021-03-15 19:46:00 (1548): Deleting stale snapshot.
2021-03-15 19:46:00 (1548): Checkpoint completed.
2021-03-15 19:56:04 (1548): Creating new snapshot for VM.
2021-03-15 19:56:22 (1548): Deleting stale snapshot.
2021-03-15 19:56:23 (1548): Checkpoint completed.
2021-03-15 20:06:26 (1548): Creating new snapshot for VM.
2021-03-15 20:06:45 (1548): Deleting stale snapshot.
2021-03-15 20:06:45 (1548): Checkpoint completed.
2021-03-15 20:16:49 (1548): Creating new snapshot for VM.
2021-03-15 20:17:06 (1548): Deleting stale snapshot.
2021-03-15 20:17:07 (1548): Checkpoint completed.
2021-03-15 20:27:11 (1548): Creating new snapshot for VM.
2021-03-15 20:27:28 (1548): Deleting stale snapshot.
2021-03-15 20:27:28 (1548): Checkpoint completed.
2021-03-15 20:27:46 (1548): Guest Log: 01:12:06.421675 control Guest control service stopped
2021-03-15 20:27:46 (1548): Guest Log: 01:12:06.425556 control Guest control worker returned with rc=VINF_SUCCESS
2021-03-15 20:27:46 (1548): Guest Log: 01:12:06.426910 main Session 0 is about to close ...
2021-03-15 20:27:46 (1548): Guest Log: 01:12:06.426942 main Stopping all guest processes ...
2021-03-15 20:27:46 (1548): Guest Log: 01:12:06.426960 main Closing all guest files ...
2021-03-15 20:27:46 (1548): Guest Log: 01:12:06.905056 main Ended.
2021-03-15 20:27:50 (1548): VM state change detected. (old = 'running', new = 'stopping')
2021-03-15 20:27:51 (1548): VM is no longer is a running state. It is in 'poweredoff'.
2021-03-15 20:27:51 (1548): VM state change detected. (old = 'stopping', new = 'poweredoff')
2021-03-15 20:27:51 (1548): Powering off VM.
2021-03-15 20:27:51 (1548): Deregistering VM. (boinc_4c618273922dd2a4, slot#17)
2021-03-15 20:27:52 (1548): Removing network bandwidth throttle group from VM.
2021-03-15 20:27:52 (1548): Removing VM from VirtualBox.
2021-03-15 20:27:57 (1548): Virtual machine exited.
20:27:58 (1548): called boinc_finish(0)

ID: 100744 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Falconet

Send message
Joined: 9 Mar 09
Posts: 271
Credit: 900,537
RAC: 468
Message 100833 - Posted: 25 Mar 2021, 11:44:04 UTC
Last modified: 25 Mar 2021, 12:06:20 UTC

It's not just on Ralph@home anymore.

Both the applications and server status pages at Rosetta@home already have "rosetta python projects"

Microsoft Windows running on an AMD x86_64 or Intel EM64T CPU 1.00 (vbox64) 23 Mar 2021, 21:00:59 UTC 0 GigaFLOPS
Linux running on an AMD x86_64 or Intel EM64T CPU 1.00 (vbox64) 23 Mar 2021, 21:00:39 UTC 0 GigaFLOPS
ID: 100833 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100835 - Posted: 25 Mar 2021, 15:52:58 UTC - in response to Message 100833.  

It's not just on Ralph@home anymore.
Both the applications and server status pages at Rosetta@home already have "rosetta python projects"

And is not possible to select it in user's profile.
ID: 100835 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Falconet

Send message
Joined: 9 Mar 09
Posts: 271
Credit: 900,537
RAC: 468
Message 100849 - Posted: 27 Mar 2021, 22:52:55 UTC - in response to Message 100835.  

Looks like at least a little work has been distributed according to the Server Status Page:

rosetta python projects 0 1 4.87 (1.74 - 7.7) 3
ID: 100849 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1492
Credit: 6,134,717
RAC: 1,728
Message 100853 - Posted: 28 Mar 2021, 7:06:12 UTC - in response to Message 100849.  

Looks like at least a little work has been distributed according to the Server Status Page:
rosetta python projects 0 1 4.87 (1.74 - 7.7) 3


Validator and assimilator daemons are disabled.
So it seems much more an internal test than wus .
But it's a beginning
ID: 100853 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Jim1348

Send message
Joined: 19 Jan 06
Posts: 718
Credit: 48,842,432
RAC: 31,424
Message 100856 - Posted: 28 Mar 2021, 20:48:52 UTC - in response to Message 100853.  

Validator and assimilator daemons are disabled.
So it seems much more an internal test than wus .
But it's a beginning

Total queued jobs: 198,308
I know it is a bit premature, but they may change over entirely at some point.
ID: 100856 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Falconet

Send message
Joined: 9 Mar 09
Posts: 271
Credit: 900,537
RAC: 468
Message 100857 - Posted: 28 Mar 2021, 21:03:15 UTC - in response to Message 100856.  

Hmm I wonder, this new app could be trRosetta?
I read this as a new app but not one to replace Rosetta 4.20, rather something new with different features.
ID: 100857 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
1 · 2 · 3 · 4 · Next

Message boards : Number crunching : New kind of app on Ralph



©2021 University of Washington
https://www.bakerlab.org