Report stuck & aborted WU here please - II

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msr-berlin

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Message 13630 - Posted: 13 Apr 2006, 11:35:51 UTC

Aborted the following work untit TRUNCATE_TERMINI_FULLRELAX_2tif__433_417 after runninbg for 34 hours.
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=13934643

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StephenYavorsky

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Message 13644 - Posted: 13 Apr 2006, 14:18:40 UTC - in response to Message 13331.  

This thread is for reporting Workunits that have hung (1% error), or that have been manually aborted for some reason. Please include the type of error in your report, and a link to the RESULT in your stats page. This thread replaces part one which is located here.



Application: Rosetta 4.98
Project: TRUNCATE_TERMINI_FULLRELAX_1ptq__433_36_0
Stuck at 1.04% after 10h36m28s
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Profile rbpeake

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Message 13650 - Posted: 13 Apr 2006, 14:35:11 UTC - in response to Message 13331.  

This thread is for reporting Workunits that have hung (1% error), or that have been manually aborted for some reason. Please include the type of error in your report, and a link to the RESULT in your stats page. This thread replaces part one which is located here.

Pardon my ignorance, but how does one technically do a link? Thanks!

Regards,
Bob P.
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Profile JDHalter

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Message 13653 - Posted: 13 Apr 2006, 15:16:18 UTC
Last modified: 13 Apr 2006, 15:21:37 UTC

I had 2 or 3 1% hangs today...this one was for one machine, and hung at 1.04% for somewhere between 18-22 hrs...(can't remember which one this machine was...), I aborted the other ones, but didn't note the % complete before...sorry.

http://www.boinc.bakerlab.org/rosetta/result.php?resultid=17018657

Here's a second wu that had the 1% hang error (don't know what %), but here's the result link to it:

http://www.boinc.bakerlab.org/rosetta/result.php?resultid=17014563

There may be a few more, as I've got another 2 machines that haven't checked in for 12+ hrs...usually they've been checking in every 4-6. If I get some time, I'll get their result links too.

Hope it helps,
JDHalter
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Robin2

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Message 13654 - Posted: 13 Apr 2006, 15:18:23 UTC

I had a days worth of work units HBLR_1.0_...... fail, showing Client error. I aborted the remaining units of that type which had not yet been run, and subsequent units (TRUNCATE_TERMINI_FULLRELAX..... and HB_BARCODE_30....) have been fine
Robin
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Message 13656 - Posted: 13 Apr 2006, 15:44:35 UTC
Last modified: 13 Apr 2006, 15:48:26 UTC

Pardon my ignorance, but how does one technically do a link? Thanks!

In BBCode you use the opening and closing "square brackets" characters, "[" and "]".

I can't show you eactly because obviously, it would create a link, but, type an open square bracket then type url= then paste in the URL you want, (open the page in your browser and copy the contents from the address line), then a closing square bracket.

What you type next will ne the "highlighted text" of your link.

The put another open square bracket followed by /url and a final closing square bracket.

Thats a link.

17128664

That one has an open square brack "url=https://boinc.bakerlab.org/rosetta/result.php?resultid=17128664" then a close square bracket. It has 17128664 next as "highlighted text", then the open square bracket "/url" and a close square bracket.
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AMD_is_logical

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Message 13659 - Posted: 13 Apr 2006, 16:04:07 UTC - in response to Message 13650.  

Pardon my ignorance, but how does one technically do a link? Thanks!


Find a post that does a link, then click on "reply to this post" for that post. Look at the quoted text in the editing window and it will show how they did it.
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Profile dag
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Message 13661 - Posted: 13 Apr 2006, 16:11:33 UTC
Last modified: 13 Apr 2006, 16:13:03 UTC

12 hours, 1% - Linux
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=13955810
TRUNCATE_TERMINI_FULLRELAX_1enh__433_645

10 hours, 1% - Windoz
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=13960661
TRUNCATE_TERMINI_FULLRELAX_1ptq__433_697
dag
--Finding aliens is cool, but understanding the structure of proteins is useful.
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Profile adrianxw
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Message 13666 - Posted: 13 Apr 2006, 17:10:14 UTC

Find a post that does a link, then click on "reply to this post" for that post. Look at the quoted text in the editing window and it will show how they did it.

You're right, it does. I'd not noticed that before!
Wave upon wave of demented avengers march cheerfully out of obscurity into the dream.
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Profile rbpeake

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Message 13668 - Posted: 13 Apr 2006, 17:22:38 UTC - in response to Message 13659.  
Last modified: 13 Apr 2006, 17:23:56 UTC

Pardon my ignorance, but how does one technically do a link? Thanks!


Find a post that does a link, then click on "reply to this post" for that post. Look at the quoted text in the editing window and it will show how they did it.


In BBCode you use the opening and closing "square brackets" characters, "[" and "]".

I can't show you eactly because obviously, it would create a link, but, type an open square bracket then type url= then paste in the URL you want, (open the page in your browser and copy the contents from the address line), then a closing square bracket.

What you type next will ne the "highlighted text" of your link.

The put another open square bracket followed by /url and a final closing square bracket.

Thats a link.

17128664

That one has an open square brack "url=https://boinc.bakerlab.org/rosetta/result.php?resultid=17128664" then a close square bracket. It has 17128664 next as "highlighted text", then the open square bracket "/url" and a close square bracket.


Thank you both very much! I have saved these responses for my future reference!


Regards,
Bob P.
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Profile JDHalter

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Message 13671 - Posted: 13 Apr 2006, 18:20:13 UTC

Here's another 1% hang...again at 1.04%...on a 3rd machine.

https://boinc.bakerlab.org/rosetta/result.php?resultid=17036887
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cwangersky

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Message 13672 - Posted: 13 Apr 2006, 18:38:50 UTC - in response to Message 13607.  

Here's an odd one...

Rosetta 4.98, WU 7449_largescale_large_fullatom_relax_dec7449_1_08_2.pdb_431_25_0 (deletia)


cwangersky, these are very big WUs which take a loooong time per model, on some P4s they might even take more than 2hr PER MODEL, so unless you have "Leave in mem when pre-empted"=YES, the PC can't complete even 1 model in 2hr before Rosetta gets swapped out to run SETI and your PC starts the WU from 0 again...

Solution: increase "time between swaps" to e.g. 4hr (deletia)


THank you -- I'll give that a try.
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Robert J
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Message 13674 - Posted: 13 Apr 2006, 19:13:51 UTC
Last modified: 13 Apr 2006, 19:16:20 UTC

This work unit was stuck at 1.04% for over six hours. Windows XP SP2.

TRUNCATE_TERMINI_FULLRELAX_1ptq__433_663_0

https://boinc.bakerlab.org/rosetta/result.php?resultid=17026441
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RC

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Message 13677 - Posted: 13 Apr 2006, 19:25:37 UTC

This unit stuck at 1.04% for 5.5 hours on Linux with Rosetta 4.98:
TRUNCATE_TERMINI_FULLRELAX_1enh__433_593_0

https://boinc.bakerlab.org/rosetta/result.php?resultid=17018950
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Rhiju
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Message 13685 - Posted: 13 Apr 2006, 21:39:21 UTC - in response to Message 13591.  

Just a reminder to those who are posting stuck WU's -- please abort the 4 work units below. We know why they're hanging, are not sending out anymore, and are giving credits to any of these jobs that have timed out! Thanks.

Found a bug! David Baker and I just tracked down the problem with these 4 workunits. Its a stupid infinite loop that only occurs with proteins with lengths of exactly 44 residues using one particular mode of Rosetta -- somehow no one in our group had ever looked at a protein exactly that size! So TallGuy-13088, you predicted right ...

Please do abort these workunits (below); otherwise, your client will continue to crunch the jobs until it times out (about 48 hours on a Windows machine). The good news is that we will give credit to all the jobs that time out, and are increasing the rigor of in-house testing to prevent this from happening in the future. And this little adventure helped us track down a pernicious bug in our code. Unfortunately, we don't yet have fixes for *all* the stuck jobs, though -- please continue to post info on other jobs that stop moving. It helps!

Jobs that should be aborted:
TRUNCATE_TERMINI_FULLRELAX_1enh__433
TRUNCATE_TERMINI_FULLRELAX_1b3aA_433
TRUNCATE_TERMINI_FULLRELAX_1ptq__433
TRUNCATE_TERMINI_FULLRELAX_2tif__433



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Bill Hepburn

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Message 13694 - Posted: 13 Apr 2006, 23:07:49 UTC - in response to Message 13331.  
Last modified: 13 Apr 2006, 23:12:04 UTC

This one stuck at 1.04% for over 13 hours.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=13967978
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RC

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Message 13704 - Posted: 14 Apr 2006, 1:49:59 UTC - in response to Message 13677.  

Another one (almost 6 hours at 1.04% on Mac OS X) - aborted.

https://boinc.bakerlab.org/rosetta/result.php?resultid=17050793

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Delk

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Message 13719 - Posted: 14 Apr 2006, 13:19:12 UTC - in response to Message 13685.  

Just a reminder to those who are posting stuck WU's -- please abort the 4 work units below. We know why they're hanging, are not sending out anymore, and are giving credits to any of these jobs that have timed out! Thanks.



I read the above as saying, no credit granted when we actually abort the stuck units although credit is granted when we leave them to timeout? Will this now be the standard way of dealing with all workunit timeouts or only in this case?
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K1100LTSE
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Message 13724 - Posted: 14 Apr 2006, 15:24:15 UTC
Last modified: 14 Apr 2006, 15:29:07 UTC

abort by gui
Windows
20 hours, 1.043%
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=13969518
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K1100LTSE
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Message 13731 - Posted: 14 Apr 2006, 16:29:20 UTC

abort by gui
windows
20.15 Hour, 1.042%
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=13977888
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Message boards : Number crunching : Report stuck & aborted WU here please - II



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