Rosetta's role in fighting coronavirus

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BORG315

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Message 92132 - Posted: 22 Mar 2020, 17:27:39 UTC - in response to Message 92127.  

Thank you all!
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Millenium

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Message 92138 - Posted: 22 Mar 2020, 21:39:37 UTC

I too got some COVID wus, great job!

That should be properly advertised, with a news about the new wus, a lot of people would join this project!
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Jim1348

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Message 92139 - Posted: 22 Mar 2020, 21:52:55 UTC - in response to Message 92138.  

That should be properly advertised, with a news about the new wus, a lot of people would join this project!

It is not unknown. They have gone from 150000 to 319948 GigaFLOPS in a few weeks.
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Profile Dave Evans

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Message 92141 - Posted: 22 Mar 2020, 22:48:03 UTC

Joining in from Scotland. Although my system is ancient it shall be focused on R@H!
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John Twohy

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Message 92142 - Posted: 22 Mar 2020, 23:01:05 UTC - in response to Message 92139.  

Oops sorry need more?
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James Lee*

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Message 92147 - Posted: 23 Mar 2020, 0:44:03 UTC

Currently, I have 14 machines with 80+ cores and 14+ GPUs. When I switched over to run one of them to Rosetta, from cancer research (WCG), I did NOT receive anything related to covid19. Whenever I would receive ALL WUs for covid19, I will switch over... Till then I will stick with cancer research. Let me know when covid19 is the priority here. I am NOT going to download the fold@home app. If it is not thru BOINC, I do not run it.
James
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Speedy
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Message 92148 - Posted: 23 Mar 2020, 1:33:18 UTC - in response to Message 92147.  
Last modified: 23 Mar 2020, 1:35:30 UTC

Currently, I have 14 machines with 80+ cores and 14+ GPUs. When I switched over to run one of them to Rosetta, from cancer research (WCG), I did NOT receive anything related to covid19. Whenever I would receive ALL WUs for covid19, I will switch over... Till then I will stick with cancer research. Let me know when covid19 is the priority here. I am NOT going to download the fold@home app. If it is not thru BOINC, I do not run it.
James

It's just luck of the draw you have to process whatever you are sent.
I have been fortunate enough now to have some convit 19 tasks. I appreciate the screenshot and task name thanks. I must say that's an impressive increase in performance (referring to a few posts below)
Have a crunching good day!!
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3013826

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Message 92154 - Posted: 23 Mar 2020, 10:39:10 UTC

2020/3/23 12:40:44 | Rosetta@home | Scheduler request completed: got 1 new tasks
2020/3/23 12:40:46 | Rosetta@home | Started download of flags
2020/3/23 12:40:46 | Rosetta@home | Started download of 2bx7jg8h_3h3_design3_COVID-19.zip
2020/3/23 12:40:48 | Rosetta@home | Finished download of flags
2020/3/23 12:40:48 | Rosetta@home | Started download of 2bx7jg8h_3h3_design3_COVID-19.flags
2020/3/23 12:40:49 | Rosetta@home | Finished download of 2bx7jg8h_3h3_design3_COVID-19.flags
2020/3/23 12:41:03 | Rosetta@home | Finished download of 2bx7jg8h_3h3_design3_COVID-19.zip
=======================

Is it this one???

[/img]
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Millenium

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Message 92157 - Posted: 23 Mar 2020, 12:00:14 UTC

Yup, that's one, keep up the good work!
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Millenium

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Message 92158 - Posted: 23 Mar 2020, 12:03:55 UTC - in response to Message 92139.  
Last modified: 23 Mar 2020, 12:05:05 UTC

That should be properly advertised, with a news about the new wus, a lot of people would join this project!

It is not unknown. They have gone from 150000 to 319948 GigaFLOPS in a few weeks.



Yeah, credit per day indeed doubled: https://www.boincstats.com/stats/14/project/detail/credit

But still, almost everytime I see something posted around, it's about Folding and not about a BOINC project :(
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torma99

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Message 92163 - Posted: 23 Mar 2020, 14:45:26 UTC - in response to Message 92147.  

"Currently, I have 14 machines with 80+ cores and 14+ GPUs. When I switched over to run one of them to Rosetta, from cancer research (WCG), I did NOT receive anything related to covid19. Whenever I would receive ALL WUs for covid19, I will switch over... Till then I will stick with cancer research. Let me know when covid19 is the priority here. I am NOT going to download the fold@home app. If it is not thru BOINC, I do not run it.
James"

Not all COVID wus were labeled covid. There were I think 8-10 projects which had just their code in robetta, and you had to search for it on robetta's site. And there you also had to use ncov, covid, and maybe sars2 for searching if I remember correctly. So right now it is essential, that many people join in. I also think that cancer research is vital, but right now everly flop counts toward making a possibility for many people to live another day.

I was really excited back then, when I discovered how to get more information about robetta projects, and found I was doing an ncov wu.
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Ezzz

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Message 92165 - Posted: 23 Mar 2020, 14:58:54 UTC - in response to Message 92163.  
Last modified: 23 Mar 2020, 15:22:22 UTC

Could you please go through how you look up the robetta work units, with an example? I think if you were to do a screencap of the workunits that you're processing and highlight the ones you found to be going towards Covid 19 research, it would be very informative and help boost people's moral.

Edit: This message was directed to torma99, but if anyone else would be able to do this please do.
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Profile dcdc

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Message 92170 - Posted: 23 Mar 2020, 17:14:33 UTC - in response to Message 92125.  

I'm not an admin but is expect Corona research will go on for years, although maybe not continuously.

It's not the only protein that needs researching though, so the effort won't be wasted.
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Profile dcdc

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Message 92172 - Posted: 23 Mar 2020, 17:20:50 UTC - in response to Message 92147.  
Last modified: 23 Mar 2020, 17:21:53 UTC

Currently, I have 14 machines with 80+ cores and 14+ GPUs. When I switched over to run one of them to Rosetta, from cancer research (WCG), I did NOT receive anything related to covid19. Whenever I would receive ALL WUs for covid19, I will switch over... Till then I will stick with cancer research. Let me know when covid19 is the priority here. I am NOT going to download the fold@home app. If it is not thru BOINC, I do not run it.
James


That would not really make any difference - if you download a batch of COVID tasks then other machines will pick up the tasks you didn't take. The result is the same.
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princah5

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Message 92175 - Posted: 23 Mar 2020, 19:25:43 UTC

About 50% of the WU's I got today are COVID tasks. Considering that Rosetta does a lot of other things that's quite ok.
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torma99

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Message 92176 - Posted: 23 Mar 2020, 19:33:07 UTC - in response to Message 92165.  
Last modified: 23 Mar 2020, 19:33:43 UTC

Could you please go through how you look up the robetta work units, with an example? I think if you were to do a screencap of the workunits that you're processing and highlight the ones you found to be going towards Covid 19 research, it would be very informative and help boost people's moral.

Edit: This message was directed to torma99, but if anyone else would be able to do this please do.


So your first thing to do is go to robettas queue: http://robetta.bakerlab.org/queue.php

At target try ncov, sars, or covid, you will see the work units.

If you have robetta work units there is a long code with two 5 digit numbers:

rb_03_15_18506_18311_ab_t000__h001_robetta_IGNORE_THE_REST_11_18_902075_5

You have to look for the second number. In this example 18311.
You can type this in the robetta queue into the ID box, and see what it actually is.

Hope I am not wrong, I read this somewhere here in the forum.
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princah5

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Message 92177 - Posted: 23 Mar 2020, 19:39:37 UTC - in response to Message 92176.  

Some new tasks have it directly in the name, e.g. 3ei3ij3t_3h3_design3_COVID-19_SAVE_ALL_OUT_902883_3_0
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Remarc

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Message 92182 - Posted: 23 Mar 2020, 23:05:34 UTC

I wanted to participate in this project to research a new dangerous virus (covid) , but than i saw that there is no specific types works, unfortunately because of this I will can not run in this project
let me know if will be created special types works to this virus
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Drock

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Message 92186 - Posted: 24 Mar 2020, 1:00:37 UTC - in response to Message 92182.  

FWIW I'm seeing 50%+ wu's related to coronavirus identified by explicit COVID-19 in filename or from rb_ robetta label.
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James Lee*

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Message 92187 - Posted: 24 Mar 2020, 1:01:29 UTC

Having moved a few machines over for "testing" to see if I would get any COVID19 WUs, there were some acquired. And cruncher dcdc made a good point in their post. Moving all machines over. :)

James
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Message boards : News : Rosetta's role in fighting coronavirus



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