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Problems with Minirosetta Version 1.64/1.65

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Message boards : Number crunching : Problems with Minirosetta Version 1.64/1.65

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Robert

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Message 60902 - Posted 29 Apr 2009 21:52:18 UTC

We've got a new minirosetta version, with some infrastructure changes and a new protocol for using experimental data from NMR.

Please report any issues here
____________

Sid Celery

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Message 60918 - Posted 30 Apr 2009 10:50:19 UTC
Last modified: 30 Apr 2009 10:51:40 UTC

Some have come down, but I haven't started crunching them yet.

For those who run Norton Internet Security 2009 it would be wise to check the new executable hasn't been quarantined in the way previous versions have, as reported here. That message shows how to restore the file from quarantine and report it to Symantec as a false positive.

It isn't quarantined on my Norton 360 v3 system here, but neither did it when NIS2009 reported a problem. Don't know about the standalone Norton AV.
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Message 60938 - Posted 1 May 2009 12:14:34 UTC

1.64 appears not to be immune to the lockfile problem.

http://boinc.bakerlab.org/rosetta/result.php?resultid=247790244

It's not clear yet if it can start the lockfile problem, or only inherit it from a 1.54 workunit previously run in the same slot.

Have you thought of modifying the program so that, even after a lockfile error, it's capable of sending back all the completed decoys?

Also, something in the chain got confused about how long it should make the minirosetta workunits sent to my newer machine. First, it sent 1.54 workunits that actually took about 3 hours instead of the 12 hours I expected. Then, when I adjusted the requested length when logged in from that machine, the length that machine got was adjusted to 12 hours for 1.54 and I started getting 1.64 workunits with an expected length of 20 hours, now adjusted down to 19 hours. The work flow doesn't seem to have had time to adjust to the faster speed of the newer machine yet.

Mel

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Message 60940 - Posted 1 May 2009 15:59:02 UTC - in response to Message ID 60902.

We've got a new minirosetta version, with some infrastructure changes and a new protocol for using experimental data from NMR.

Please report any issues here


____________

Mel

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Message 60941 - Posted 1 May 2009 16:02:11 UTC - in response to Message ID 60902.

[quote]We've got a new minirosetta version, with some infrastructure changes and a new protocol for using experimental data from NMR.

PlU please report any issues here [/quote}
How come each upload had been taking in excess of 25 minutes this week, it usually has only taken 20 seconds per work unit ? Have been on this upload now for 45 minutes and only upoading 80 work units.
____________

HW&JC

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Message 60942 - Posted 1 May 2009 18:45:33 UTC - in response to Message ID 60918.

For those who run Norton Internet Security 2009 it would be wise to check the new executable hasn't been quarantined in the way previous versions have, as reported here. That message shows how to restore the file from quarantine and report it to Symantec as a false positive.

Yup, it does it again:

01/05/2009 19:33:03 rosetta@home Task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-17-S3-24--ARF1-_11731_60_0 exited with zero status but no 'finished' file
01/05/2009 19:33:03 rosetta@home If this happens repeatedly you may need to reset the project.
01/05/2009 19:33:03 rosetta@home Task DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-22-S3-21--DvR115G-_11729_82_0 exited with zero status but no 'finished' file
01/05/2009 19:33:03 rosetta@home If this happens repeatedly you may need to reset the project.
01/05/2009 19:33:21 rosetta@home [error] Process creation failed: The system cannot find the file specified. (0x2)
01/05/2009 19:33:22 rosetta@home [error] Process creation failed: The system cannot find the file specified. (0x2)
01/05/2009 19:33:22 rosetta@home [error] Process creation failed: The system cannot find the file specified. (0x2)
01/05/2009 19:33:23 rosetta@home [error] Process creation failed: The system cannot find the file specified. (0x2)
01/05/2009 19:33:24 rosetta@home [error] Process creation failed: The system cannot find the file specified. (0x2)
01/05/2009 19:33:24 rosetta@home Computation for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-17-S3-24--ARF1-_11731_60_0 finished
01/05/2009 19:33:24 rosetta@home Output file ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-17-S3-24--ARF1-_11731_60_0_0 for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-17-S3-24--ARF1-_11731_60_0 absent
01/05/2009 19:33:24 rosetta@home Computation for task DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-22-S3-21--DvR115G-_11729_82_0 finished
01/05/2009 19:33:24 rosetta@home Output file DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-22-S3-21--DvR115G-_11729_82_0_0 for task DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-22-S3-21--DvR115G-_11729_82_0 absent
01/05/2009 19:33:32 rosetta@home Starting DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-23-S3-19--DvR115G-_11729_82_0
01/05/2009 19:33:32 rosetta@home Starting abinitio_norelax_homfrag__plus_native_1hoeA__SAVE_ALL_OUT_11263_2937_0
01/05/2009 19:33:32 rosetta@home Started download of minirosetta_1.64_windows_intelx86.exe
01/05/2009 19:33:32 rosetta@home Computation for task DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-23-S3-19--DvR115G-_11729_82_0 finished
01/05/2009 19:33:32 rosetta@home Output file DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-23-S3-19--DvR115G-_11729_82_0_0 for task DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-23-S3-19--DvR115G-_11729_82_0 absent
01/05/2009 19:33:32 rosetta@home Computation for task abinitio_norelax_homfrag__plus_native_1hoeA__SAVE_ALL_OUT_11263_2937_0 finished
01/05/2009 19:33:32 rosetta@home Output file abinitio_norelax_homfrag__plus_native_1hoeA__SAVE_ALL_OUT_11263_2937_0_0 for task abinitio_norelax_homfrag__plus_native_1hoeA__SAVE_ALL_OUT_11263_2937_0 absent
01/05/2009 19:33:32 rosetta@home Starting ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-20--ARF1-_11731_60_0
01/05/2009 19:33:32 rosetta@home Starting ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-18--ARF1-_11731_60_0
01/05/2009 19:33:32 rosetta@home Starting ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-6-S3-27--ER553-_11730_82_0
01/05/2009 19:33:32 rosetta@home Starting ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-21-S3-28--ARF1-_11731_62_0
01/05/2009 19:33:32 rosetta@home Starting ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-7-S3-12--ARF1-_11731_66_0
01/05/2009 19:33:32 rosetta@home Starting ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-8-S3-12--ER553-_11730_69_0
01/05/2009 19:33:33 rosetta@home Computation for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-20--ARF1-_11731_60_0 finished
01/05/2009 19:33:33 rosetta@home Output file ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-20--ARF1-_11731_60_0_0 for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-20--ARF1-_11731_60_0 absent
01/05/2009 19:33:33 rosetta@home Computation for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-18--ARF1-_11731_60_0 finished
01/05/2009 19:33:33 rosetta@home Output file ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-18--ARF1-_11731_60_0_0 for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-29-S3-18--ARF1-_11731_60_0 absent
01/05/2009 19:33:33 rosetta@home Computation for task ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-6-S3-27--ER553-_11730_82_0 finished
01/05/2009 19:33:33 rosetta@home Output file ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-6-S3-27--ER553-_11730_82_0_0 for task ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-6-S3-27--ER553-_11730_82_0 absent
01/05/2009 19:33:33 rosetta@home Computation for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-21-S3-28--ARF1-_11731_62_0 finished
01/05/2009 19:33:33 rosetta@home Output file ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-21-S3-28--ARF1-_11731_62_0_0 for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-21-S3-28--ARF1-_11731_62_0 absent
01/05/2009 19:33:33 rosetta@home Computation for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-7-S3-12--ARF1-_11731_66_0 finished
01/05/2009 19:33:33 rosetta@home Output file ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-7-S3-12--ARF1-_11731_66_0_0 for task ARF1_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-7-S3-12--ARF1-_11731_66_0 absent
01/05/2009 19:33:33 rosetta@home Computation for task ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-8-S3-12--ER553-_11730_69_0 finished
01/05/2009 19:33:33 rosetta@home Output file ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-8-S3-12--ER553-_11730_69_0_0 for task ER553_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-8-S3-12--ER553-_11730_69_0 absent

Go to "Security History" and select the "Resolved Security Risks" option from the drop down. Click "More Details" and chose to "Restore Risk" and ensure that the MiniRosetta executable isn't rejected again. Not sure where the option went to report the false positive to Symantec, but it sorts you out.

Strange, because a lot of 1.64 tasks went through ok before it rejected all the tasks at once. Click my name on this message to see my reported results - but also note that I have a lot of computer problems anyway, so there are always a lot of errors. My fault rather than Rosetta's in those cases.

jswolf19

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Message 60947 - Posted 2 May 2009 3:21:00 UTC

It seems that I'm using Mini 1.65 instead of 1.64 for the current work unit, but I just wanted to say that I tried reapplying the day-of-week network-availability overrides in BOINC advanced preferences to see if the work unit would freeze as it did in 1.54, and it appears to be working fine. Thanks ^_^

Mike Tyka

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Message 60954 - Posted 2 May 2009 18:08:12 UTC - in response to Message ID 60947.

It seems that I'm using Mini 1.65 instead of 1.64 for the current work unit, but I just wanted to say that I tried reapplying the day-of-week network-availability overrides in BOINC advanced preferences to see if the work unit would freeze as it did in 1.54, and it appears to be working fine. Thanks ^_^


Yes that's one of the fixes in this version :-D excellent !
____________
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Mike Tyka

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Message 60955 - Posted 2 May 2009 18:10:14 UTC

1.65 was released. This is a high-priority patch that should fix a problem with the uploads.
____________
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Paul D. Buck Profile

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Message 60956 - Posted 2 May 2009 19:29:20 UTC - in response to Message ID 60955.

1.65 was released. This is a high-priority patch that should fix a problem with the uploads.

So are we going to see 1.65 in Ralph?

googloo
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Message 60957 - Posted 2 May 2009 20:17:19 UTC

Please, please, please post version changes to Rosetta Application Version Release Log.

HW&JC

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Message 60958 - Posted 2 May 2009 20:35:14 UTC - in response to Message ID 60942.
Last modified: 2 May 2009 20:36:20 UTC

Ditto for NIS2009 with MiniRosetta 1.65

Go to "Security History" and select the "Resolved Security Risks" option from the drop down. Click "More Details" and chose to "Restore Risk" and ensure that the MiniRosetta executable isn't rejected again. Not sure where the option went to report the false positive to Symantec, but it sorts you out.

I think the way to report the false positive is to chose the report option first, then restore risk. I did it wrong again but I'll remember next time.

robertmiles Profile

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Message 60971 - Posted 3 May 2009 16:31:31 UTC

The lockfile problem again:

http://boinc.bakerlab.org/rosetta/result.php?resultid=248406598

Could you tell the BOINC developers that you need this feature, if you can't find it already?

Don't assign any workunit to run in a slot comtaining a boinc_lockfile file left over from a previous workunit run in that slot. If such a slot is not already in use, disable any use of it until the next reboot cleans things up. Instead, create a new slot and use that one.

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Message 60988 - Posted 4 May 2009 11:17:59 UTC
Last modified: 4 May 2009 11:18:56 UTC

1PTQA_BOINC_MPZN_vanilla_abrelax_9106_12334_1

http://boinc.bakerlab.org/rosetta/result.php?resultid=248349357

<core_client_version>6.6.20</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 5- 4 0:14:21:] :: BOINC:: Initializing ... ok.
[2009- 5- 4 0:14:21:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -fragB_size
not found in command line top-level context

</stderr_txt>
]]>
____________


Paul D. Buck Profile

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Message 61003 - Posted 4 May 2009 19:55:44 UTC

Reason: Access Violation (0xc0000005) at address 0x004F3D7B read attempt to address 0x00000004 on task Docking_benchmark_natives__1FBI.mppk.pdb.gzdock_score12_hi.xml_11809_243_0

P . P . L .
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Message 61016 - Posted 5 May 2009 6:56:55 UTC

Hi.

This one had a problem, twice now.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=227016174

Tue 05 May 2009 16:46:02 EST|rosetta@home|Output file Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_189_1_0 for task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_189_1 absent

Done with app 1.65.

pete.


____________


Paul D. Buck Profile

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Message 61018 - Posted 5 May 2009 11:11:51 UTC

Another Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_378_0 crash.

Seems like a bad task definition to me ...

Sarel Profile

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Message 61026 - Posted 5 May 2009 20:27:15 UTC - in response to Message ID 61018.

Hello,

I've tracked down the crashes in the docking runs to 4 runs within the batch. I've now fixed the problem and should rerun those soon (first on ralph).

I'm sorry for the trouble this has caused.

Thanks for your quick feedback!

Sarel.

____________

Gavin Shaw Profile
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Message 61027 - Posted 5 May 2009 22:58:44 UTC
Last modified: 5 May 2009 22:59:42 UTC

Crashed unit using MiniRosetta 1.65.

Docking_benchmark_natives__1FBI.mppk.pdb.gzdock_score12_hi.xml_11809_52_1

Boinc error message: Unrecoverable error for result Docking_benchmark_natives__1FBI.mppk.pdb.gzdock_score12_hi.xml_11809_52_1 ( - exit code -1073741819 (0xc0000005))
____________
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Speedy
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Message 61029 - Posted 5 May 2009 23:05:48 UTC - in response to Message ID 61027.

Crashed unit using MiniRosetta 1.65.

Docking_benchmark_natives__1FBI.mppk.pdb.gzdock_score12_hi.xml_11809_52_1

Boinc error message: Unrecoverable error for result Docking_benchmark_natives__1FBI.mppk.pdb.gzdock_score12_hi.xml_11809_52_1 ( - exit code -1073741819 (0xc0000005))

The way I understand is that this issue has been fixed. There are some tasks still to be returned that have errors, your task was one of these by the looks of it.
____________
Have a crunching good day!!

LizzieBarry

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Message 61031 - Posted 6 May 2009 10:33:14 UTC - in response to Message ID 61026.

I've tracked down the crashes in the docking runs to 4 runs within the batch. I've now fixed the problem and should rerun those soon (first on ralph).

I'm sorry for the trouble this has caused.

Thanks for your quick feedback!

Sarel

I think I got one of those:

Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0

It looks like it ran for 10 seconds but in fact it ran for over two hours

06/05/2009 08:45:01 rosetta@home Starting task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0 using minirosetta version 165
06/05/2009 08:48:22 rosetta@home Restarting task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0 using minirosetta version 165
06/05/2009 08:51:46 rosetta@home Restarting task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0 using minirosetta version 165
[...]
[...]
06/05/2009 10:53:38 rosetta@home Restarting task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0 using minirosetta version 165
06/05/2009 10:57:02 rosetta@home Restarting task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0 using minirosetta version 165
06/05/2009 11:02:22 rosetta@home Computation for task Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0 finished

I the absence of stating which jobs they are I'll be aborting all dockiing...11809_*.* jobs

Sid Celery

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Message 61034 - Posted 6 May 2009 14:22:40 UTC - in response to Message ID 61031.

I've tracked down the crashes in the docking runs to 4 runs within the batch. I've now fixed the problem and should rerun those soon (first on ralph).

I'm sorry for the trouble this has caused.

I think I got one of those:

Docking_benchmark_natives__2KAI.mppk.pdb.gzdock_score12_hi.xml_11809_6_0

It looks like it ran for 10 seconds but in fact it ran for over two hours

In the absence of stating which jobs they are I'll be aborting all docking...11809_*.* jobs

If this was one of those jobs, why has it gone back out to another user?

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=227006233
____________

TomaszPawel

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Message 61035 - Posted 6 May 2009 18:52:44 UTC
Last modified: 6 May 2009 19:01:26 UTC

Hi

I have first error of 1.65

http://boinc.bakerlab.org/rosetta/result.php?resultid=248333213

<core_client_version>6.6.20</core_client_version>
<![CDATA[
<message>
- exit code -1073741680 (0xc0000090)
</message>
<stderr_txt>
[2009- 5- 6 18: 7: 0:] :: BOINC:: Initializing ... ok.
[2009- 5- 6 18: 7: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev29025.zip
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _U18X26X_00001
Starting work on structure: _U18X26X_00002
Starting work on structure: _U18X26X_00003
Starting work on structure: _U18X26X_00004
Starting work on structure: _U18X26X_00005
Starting work on structure: _U18X26X_00006
Starting work on structure: _U18X26X_00007
Starting work on structure: _U18X26X_00008
Starting work on structure: _U18X26X_00009
Starting work on structure: _U18X26X_00010
Starting work on structure: _U18X26X_00011


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Float Invalid Operation (0xc0000090) at address 0x0050A2B9

Engaging BOINC Windows Runtime Debugger...


</stderr_txt>
]]>


2,2 h lost....


and for 1.64

http://boinc.bakerlab.org/rosetta/result.php?resultid=247697671

<core_client_version>6.6.20</core_client_version>
<![CDATA[
<message>
- exit code -1073741680 (0xc0000090)
</message>
<stderr_txt>
[2009- 5- 4 20:20:35:] :: BOINC:: Initializing ... ok.
[2009- 5- 4 20:20:35:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev29025.zip
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _U23X25X_00001
Starting work on structure: _U23X25X_00002
Starting work on structure: _U23X25X_00003
Starting work on structure: _U23X25X_00004
Starting work on structure: _U23X25X_00005
Starting work on structure: _U23X25X_00006
Starting work on structure: _U23X25X_00007
Starting work on structure: _U23X25X_00008
Starting work on structure: _U23X25X_00009


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Float Invalid Operation (0xc0000090) at address 0x0050AEE9

Engaging BOINC Windows Runtime Debugger...


</stderr_txt>
]]>

almost 2h lost...
____________
WWW of Polish National Team - Join! Crunch! Win!

ViVac

Joined: Dec 10 08
Posts: 4
ID: 292074
Credit: 101,076
RAC: 0
Message 61040 - Posted 6 May 2009 22:25:59 UTC

aonther (0xc0000005) error here.


http://boinc.bakerlab.org/rosetta/result.php?resultid=249318829

svincent

Joined: Dec 30 05
Posts: 202
ID: 44923
Credit: 4,102,500
RAC: 5,735
Message 61047 - Posted 7 May 2009 15:18:42 UTC

task 249354645 failed on Mac during initialization. It's actually the 3rd time it was sent out (16th April was the first: suspect this predates version 1.65)

Watchdog active.
# cpu_run_time_pref: 14400
Hbond tripped: [2009- 5- 6 21:40:20:]

ERROR: dis==0 in pairtermderiv!
ERROR:: Exit from: src/core/scoring/methods/PairEnergy.cc line: 333
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>

____________

svincent

Joined: Dec 30 05
Posts: 202
ID: 44923
Credit: 4,102,500
RAC: 5,735
Message 61048 - Posted 7 May 2009 20:02:51 UTC

This task 249446890 (lr8_seq_score12_rlbd_1wd6_IGNORE_THE_REST_DECOY_11810_826_0) looks OK in the BOINC task pane on Mac but the graphics are strange.

No protein is displayed and the step remains stuck at 0, although the task number slowly increments as usual.
____________

Snagletooth

Joined: Feb 22 07
Posts: 192
ID: 149031
Credit: 1,396,123
RAC: 1,318
Message 61052 - Posted 8 May 2009 5:37:09 UTC - in response to Message ID 61048.

This task 249446890 (lr8_seq_score12_rlbd_1wd6_IGNORE_THE_REST_DECOY_11810_826_0) looks OK in the BOINC task pane on Mac but the graphics are strange.

No protein is displayed and the step remains stuck at 0, although the task number slowly increments as usual.


I have a couple of these exhibiting the same odd graphics on my Mac as well. lr8_seq_score12_rlbd_4ubp_IGNORE_THE_REST_DECOY_11810_866_0 has finished successfully albeit very quickly; it completed 99 models in 12737 seconds.

Snags

Speedy
Avatar

Joined: Sep 25 05
Posts: 159
ID: 1058
Credit: 507,926
RAC: 0
Message 61053 - Posted 8 May 2009 6:16:25 UTC - in response to Message ID 61052.


I have a couple of these exhibiting the same odd graphics on my Mac as well. lr8_seq_score12_rlbd_4ubp_IGNORE_THE_REST_DECOY_11810_866_0 has finished successfully albeit very quickly; it completed 99 models in 12737 seconds.

lr8 tasks are known to finish way before the run time pref is met. This is perfectly normal I have had a number of these on my windows host.
____________
Have a crunching good day!!

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 61054 - Posted 8 May 2009 6:18:45 UTC

Hi.

I've noticed that too, the tasks starting with lr8_seq_score12_rlbd_ the graphics

are mostly blank. The only thing working is the time & models count,

stage says unknown! Otherwise they run O.K.

pete.


____________


Betting Slip

Joined: Sep 26 05
Posts: 71
ID: 1160
Credit: 5,702,246
RAC: 0
Message 61056 - Posted 8 May 2009 10:27:29 UTC

http://boinc.bakerlab.org/rosetta/result.php?resultid=249163776



<core_client_version>6.6.20</core_client_version>
<![CDATA[
<message>
too many exit(0)s
</message>
<stderr_txt>
[2009- 5- 6 8:46:50:] :: BOINC:: Initializing ... ok.
[2009- 5- 6 8:46:50:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev29025.zip
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _U6X12X_00001
# cpu_run_time_pref: 86400
Starting work on structure: _U6X12X_00002
Starting work on structure: _U6X12X_00003
Starting work on structure: _U6X12X_00004
Starting work on structure: _U6X12X_00005
Starting work on structure: _U6X12X_00006
Starting work on structure: _U6X12X_00007
Starting work on structure: _U6X12X_00008
Starting work on structure: _U6X12X_00009
Starting work on structure: _U6X12X_00010
Starting work on structure: _U6X12X_00011
Starting work on structure: _U6X12X_00012
Starting work on structure: _U6X12X_00013
Starting work on structure: _U6X12X_00014
Starting work on structure: _U6X12X_00015
Starting work on structure: _U6X12X_00016
Starting work on structure: _U6X12X_00017
Starting work on structure: _U6X12X_00018
Starting work on structure: _U6X12X_00019
Starting work on structure: _U6X12X_00020
Starting work on structure: _U6X12X_00021
Starting work on structure: _U6X12X_00022
Starting work on structure: _U6X12X_00023
Starting work on structure: _U6X12X_00024
Starting work on structure: _U6X12X_00025
Starting work on structure: _U6X12X_00026
Starting work on structure: _U6X12X_00027
Starting work on structure: _U6X12X_00028
Starting work on structure: _U6X12X_00029
Starting work on structure: _U6X12X_00030
Starting work on structure: _U6X12X_00031
Starting work on structure: _U6X12X_00032
Starting work on structure: _U6X12X_00033
Starting work on structure: _U6X12X_00034
Starting work on structure: _U6X12X_00035
Starting work on structure: _U6X12X_00036
Starting work on structure: _U6X12X_00037
Starting work on structure: _U6X12X_00038
Starting work on structure: _U6X12X_00039
[2009- 5- 7 18:23:19:] :: BOINC:: Initializing ... ok.
[2009- 5- 7 18:23:19:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev29025.zip
Setting database description ...
Setting up checkpointing ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 86400
Starting work on structure: _U6X12X_00039
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_U6X12X_00000039_ClassicAbinitio__stage4_kk_2 ... success!
Starting work on structure: _U6X12X_00040
[2009- 5- 7 19:14:22:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:15: 3:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:15:44:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:16:25:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:17: 7:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:17:48:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:18:29:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:19:10:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:19:51:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:32:22:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:33: 3:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:33:45:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:34:26:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:35: 7:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:35:48:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:36:29:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:37:11:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:37:52:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:47:39:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:48:21:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:49: 2:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:49:43:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:50:24:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:51: 6:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:51:47:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:52:28:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:53: 9:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:53:50:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:54:32:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:55:13:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:55:54:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:58:39:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 19:59:21:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20: 1:41:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20: 2:22:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:20:17:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:20:58:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:21:40:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:22:21:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:23: 2:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:23:43:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:24:24:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:25: 6:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:25:47:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:26:28:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:27: 9:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:27:50:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:28:32:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:29:13:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:29:54:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:30:35:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:31:16:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:31:58:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:32:39:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:33:20:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:34: 1:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:34:43:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:35:24:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:36: 5:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:36:46:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:37:28:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:40:35:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:41:16:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:41:57:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:42:39:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:45:45:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:46:26:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:47: 7:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:52:20:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:53: 0:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:53:42:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:54:23:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:55: 4:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:55:45:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:56:27:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:57: 8:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:57:49:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:58:31:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:59:12:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 20:59:53:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21: 0:34:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21: 1:16:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21: 1:57:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21: 2:38:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21: 3:19:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21: 4: 0:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:25:23:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:26: 4:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:26:45:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:27:27:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:28: 8:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:28:49:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:29:30:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:30:12:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:30:53:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:31:34:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:32:15:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:32:57:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:33:38:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:34:19:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting
[2009- 5- 7 21:37: 4:] :: BOINC:: Initializing ... ok.
Can't acquire lockfile - exiting

</stderr_txt>
]]>


Validate state Invalid
Claimed credit 188.147749656091
Granted credit 0
application version 1.65

____________

dgnuff Profile
Avatar

Joined: Nov 1 05
Posts: 347
ID: 8170
Credit: 23,006,100
RAC: 6,674
Message 61061 - Posted 8 May 2009 16:57:55 UTC

A question for all the "error experts". I've got a task running on one of my machines that appears to have stalled.

Here's the line from the messages where it started:

Silver rosetta@home 5/4/2009 18:05:05 Starting abinitio_norelax_homfrag_natfrag_129_B_2hkvA_SAVE_ALL_OUT_6252_7736_0

This is from BoincView, since that program allows me to monitor all my farm machines from one place.

What's a concern is that after almost 4 days, it's still taking a slot up on the machine. CPU efficiency reports as zero (not a good sign), CPU consumed is 1:48:20, however the to completion time is off the scale: 140:06:02.

What I'd like to know is the most useful things I can do to get information about this back to Bakerlab. That includes anything up to and including attaching a debugger to it and poking around inside the process.
____________

Mod.Sense
Forum moderator
Project administrator

Joined: Aug 22 06
Posts: 3381
ID: 106194
Credit: 0
RAC: 0
Message 61062 - Posted 8 May 2009 19:56:55 UTC

dnuff, what is the current status of the task? "Running"? What platform are you running on? What BOINC version?
____________
Rosetta Moderator: Mod.Sense

svincent

Joined: Dec 30 05
Posts: 202
ID: 44923
Credit: 4,102,500
RAC: 5,735
Message 61063 - Posted 8 May 2009 23:48:42 UTC

I've just has a couple of 1.67 tasks (the first and only two I've received) fail on me in termination on Mac. This happened on Ralph 1.67 also: I reported it then and it should have been fixed.

249719353
249691873

Crashed executable name: minirosetta_1.67_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.4.11 build 8S2167
Fri May 8 14:26:41 2009

Thread 0 Crashed:
0 ...etta_1.67_i686-apple-darwin 0x00efc851 __ZN7utility7signals9SignalHubIvN4core12conformation7signals16DestructionEventEE11send_signalES5_ + 1593
1 ...etta_1.67_i686-apple-darwin 0x0002a4a7 __ZN4core12conformation12ConformationD1Ev + 7373
2 ...etta_1.67_i686-apple-darwin 0x000910d0 __ZN4core4pose4PoseD1Ev + 4652
3 ...etta_1.67_i686-apple-darwin 0x00518bdc __ZN9protocols3jd214JobDistributor2goEN7utility7pointer10owning_ptrINS_5moves5MoverEEE + 1730
4 ...etta_1.67_i686-apple-darwin 0x00b59c20 __ZN9protocols3jd219BOINCJobDistributor2goEN7utility7pointer10owning_ptrINS_5moves5MoverEEE + 42
5 ...etta_1.67_i686-apple-darwin 0x0013b068 __ZN9protocols8abinitio24Loopbuild_Threading_mainEv + 720
6 ...etta_1.67_i686-apple-darwin 0x00005db8 _main + 7640
7 ...etta_1.67_i686-apple-darwin 0x0000292e __start + 216
8 ...etta_1.67_i686-apple-darwin 0x00002855 start + 41


And could we have a new thread for 1.67 please?
____________

nick n
Avatar

Joined: Aug 26 07
Posts: 49
ID: 201050
Credit: 219,102
RAC: 0
Message 61065 - Posted 9 May 2009 4:04:02 UTC

Yeah we should start a 1.67 thread

dgnuff Profile
Avatar

Joined: Nov 1 05
Posts: 347
ID: 8170
Credit: 23,006,100
RAC: 6,674
Message 61066 - Posted 9 May 2009 5:01:44 UTC - in response to Message ID 61062.

dnuff, what is the current status of the task? "Running"? What platform are you running on? What BOINC version?


Platform: Windows XP SP 3
Boinc client version: 6.4.7
Hardware: Intel Q6600 quad core, 2 GB memory

Link to the host. While I'm at it, Task details and workunit details

According to boincmgr, it's running, high priority.

Keeping that in mind, I ran a VNC session to get to the desktop of the system in question. Task manager shows the process is present, but not using any CPU time.
____________

Snagletooth

Joined: Feb 22 07
Posts: 192
ID: 149031
Credit: 1,396,123
RAC: 1,318
Message 61067 - Posted 9 May 2009 6:23:01 UTC

I just had one of these crash upon completion on my Mac as well:

threading_lb_test1_hb_t373__IGNORE_THE_REST_11850_55_0

# cpu_run_time_pref: 36000
SIGBUS: bus error

Crashed executable name: minirosetta_1.67_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.6 build 9G55
Fri May 8 23:50:54 2009

sh: /usr/bin/atos: No such file or directory
0 0x006c0345 SIGPIPE: write on a pipe with no reader
1 0x004a3d8e SIGPIPE: write on a pipe with no reader
2 0x90a9e2bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0002a4a7 SIGPIPE: write on a pipe with no reader
5 0x000910d0 SIGPIPE: write on a pipe with no reader
6 0x00518bdc SIGPIPE: write on a pipe with no reader
7 0x00b59c20 SIGPIPE: write on a pipe with no reader
8 0x0013b068 SIGPIPE: write on a pipe with no reader
9 0x00005db8 SIGPIPE: write on a pipe with no reader
10 0x0000292e SIGPIPE: write on a pipe with no reader
11 0x00002855
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x90a66802 ecx: 0xbfffc26c edx: 0x90a321c6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc2a8 esp: 0xbfffc26c
ss: 0x0000001f efl: 0x00000206 eip: 0x90a321c6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

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Message 61073 - Posted 9 May 2009 15:40:09 UTC

dgnuff, when I've seen that before, it always seems it is with that era of BOINC Manager installed. It seems to lose track of the tasks sometimes and now you probably have an idle CPU. I suggest you suspend and release the task and see if it wakes up. If not, suspend and release it for a minute or so, and after 5 times the watchdog will kick it out for not making progress after 5 restarts and it will report back.
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Message 61077 - Posted 9 May 2009 20:37:33 UTC - in response to Message ID 61073.
Last modified: 9 May 2009 20:40:25 UTC

dgnuff, when I've seen that before, it always seems it is with that era of BOINC Manager installed. It seems to lose track of the tasks sometimes and now you probably have an idle CPU. I suggest you suspend and release the task and see if it wakes up. If not, suspend and release it for a minute or so, and after 5 times the watchdog will kick it out for not making progress after 5 restarts and it will report back.


Thanks for the information. Suspending and resuming it a couple of times unlocked it. I'll keep an eye on it for now, since the completion time is totally wrong. However, the "completion percentage" is increasing at a rate that's correct for my standard run time of 12 hours.

-- Edit --

You indicated that a 6.4.? client can cause this. I notice that the current version for Windows is 6.6.20. Do you think it would be worth my time to download and install that to avoid this problem in the future?
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Message 61079 - Posted 9 May 2009 23:14:07 UTC - in response to Message ID 61077.


You indicated that a 6.4.? client can cause this. I notice that the current version for Windows is 6.6.20. Do you think it would be worth my time to download and install that to avoid this problem in the future?

I'm not Mod.Sense In my view it's always best to update to the latest stable version of Boinc Especially if a earlier version is causing a problem as was indicated in Mod. Sense post above.
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Message 61086 - Posted 10 May 2009 3:32:56 UTC

There have been other problems with the current BOINC release, so I wasn't trying to push you that direction. Just to say that the situation wasn't unique to your machine or the task, or Rosetta version.

Yes, I wouldn't make too much of the completion estimate. It was thrown off by the period of time with no CPU. Now that it is crunching again, it should end in a normal time period for your tasks (I mean, based on your runtime preference plus up to 4 hours).
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Message 61102 - Posted 11 May 2009 0:48:55 UTC - in response to Message ID 60942.

Why not download Windows 7 Release Candidate 64 bit? Take advantage of your processor's capabilities. A fresh install may correct computer problems!
http://www.microsoft.com/windows/windows-7/

Click my name on this message to see my reported results - but also note that I have a lot of computer problems anyway, so there are always a lot of errors. My fault rather than Rosetta's in those cases.
Free to use for about a year, BUT then must purchase RTM, or return to XP (which is nearing end-of-life support)

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Message 61351 - Posted 24 May 2009 4:40:18 UTC

I like the new color in the accepted energy box in the graphics. Has anything changed in what it is doing or has the color just been changed? Thanks in advance.
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Message boards : Number crunching : Problems with Minirosetta Version 1.64/1.65


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