Task 833730137
| Name | FFD__16c32b504f5c32b5c031aaf3c3c788c9_abinitioDocking_16_06_04_27_46_R8072_globalDocking_1_SAVE_ALL_OUT_379173_10_0 |
| Workunit | 754661207 |
| Created | 9 Jun 2016, 12:41:06 UTC |
| Sent | 9 Jun 2016, 12:49:21 UTC |
| Report deadline | 23 Jun 2016, 12:49:21 UTC |
| Received | 23 Jun 2016, 21:13:57 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 6229663 |
| Run time | |
| CPU time | 7 hours 59 min 5 sec |
| Validate state | Valid |
| Credit | 173.17 |
| Device peak FLOPS | 0.00 GFLOPS |
| Application version | --- |
Stderr output
<core_client_version>7.2.42</core_client_version> <![CDATA[ <stderr_txt> [2016- 6-23 3:19: 5:] :: BOINC:: Initializing ... ok. [2016- 6-23 3:19: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_d0bf94b.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. No heartbeat from core client for 30 sec - exiting FILE_LOCK::unlock(): close failed.: Bad file descriptor [2016- 6-23 3:20:57:] :: BOINC:: Initializing ... ok. [2016- 6-23 3:20:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2016- 6-23 3:23:47:] :: BOINC:: Initializing ... ok. [2016- 6-23 3:23:47:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2016- 6-23 6:47:15:] :: BOINC:: Initializing ... ok. [2016- 6-23 6:47:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. [2016- 6-23 7: 0:46:] :: BOINC:: Initializing ... ok. [2016- 6-23 7: 0:46:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. [2016- 6-23 9: 7:58:] :: BOINC:: Initializing ... ok. [2016- 6-23 9: 7:58:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. [2016- 6-23 9:23:11:] :: BOINC:: Initializing ... ok. [2016- 6-23 9:23:11:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_x86_64-pc-linux-gnu -beta -silent_gz -mute all -boinc:max_nstruct 200000 -s proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.pdb -patchdock proteinA_proteinB_patchdock_split_01_16_06_04_27_46_R8072.patchdock -patchdock_random_entry 1 1136 -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol global_docking_16_06_04_27_46_R8072.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -use_input_sc -in:file:native proteinA_proteinB_16_06_04_27_46_R8072.pdb -out:file:silent default.out -out:file:silent_struct_type score_jump -run:write_failures false -cpu_run_time 28800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3650349 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Using previously extracted minirosetta_database. Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 340 starting structures 28744.7 cpu seconds This process generated 340 decoys from 340 attempts ====================================================== BOINC :: WS_max 4.48217e+08 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> ]]>
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