Task 1625606862
| Name | RosettaVS_SAVE_ALL_OUT_NOJRAN_betaTrCP_frame_1735_fulldb_IGNORE_THE_REST_SoVBHD_6_2072_3022871_2_0 |
| Workunit | 1446196549 |
| Created | 24 Dec 2025, 6:35:12 UTC |
| Sent | 24 Dec 2025, 7:11:41 UTC |
| Report deadline | 27 Dec 2025, 7:11:41 UTC |
| Received | 29 Dec 2025, 9:46:34 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 6261032 |
| Run time | 7 hours 13 min 52 sec |
| CPU time | 6 hours 30 min 17 sec |
| Validate state | Valid |
| Credit | 673.65 |
| Device peak FLOPS | 5.90 GFLOPS |
| Application version | Rosetta Beta v6.06 x86_64-apple-darwin |
| Peak working set size | 1,719.53 MB |
| Peak swap size | 35,988.04 MB |
| Peak disk usage | 26.12 MB |
Stderr output
<core_client_version>8.2.5</core_client_version> <![CDATA[ <stderr_txt> command: rosetta_beta_6.06_x86_64-apple-darwin @betaTrCP_frame_1735_fulldb_SoVBHD_6_2072.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 Using database: database_f5ae1de8e1/database Starting watchdog... Watchdog active. [ ERROR ]: Caught exception: File: src/core/kinematics/Stub.cc:106 Error in Stub::from_four_points(): File: src/numeric/xyzVector.hh:654 Cannot create normalized xyzVector from vector of length() zero. Error occurred when trying to normalize the vector between points A and B. A=[-1663880844370256577075219529728.000000,-2989256899557611091512629657600.000000,16465210473805185635250350325760.000000], B=[-1663880844370256577075219529728.000000,-2989256899557611091512629657600.000000,16465210473805185635250350325760.000000]. ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: 0 rosetta_beta_6.06_x86_64-apple-darw 0x00000001059bcec7 backtrace_string(int) + 87 1 rosetta_beta_6.06_x86_64-apple-darw 0x00000001059d0a1d utility::excn::Exception::Exception(char const*, int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>> const&) + 205 2 rosetta_beta_6.06_x86_64-apple-darw 0x00000001055ad037 core::kinematics::Stub::from_four_points(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&) + 2071 3 rosetta_beta_6.06_x86_64-apple-darw 0x0000000104efc8cf core::scoring::lkball::LKB_ResidueInfo::build_waters(core::conformation::Residue const&, bool) + 895 4 rosetta_beta_6.06_x86_64-apple-darw 0x0000000104efc1ae core::scoring::lkball::LKB_ResidueInfo::LKB_ResidueInfo(core::conformation::Residue const&, bool) + 270 5 rosetta_beta_6.06_x86_64-apple-darw 0x00000001025aeb53 std::__1::shared_ptr<core::scoring::lkball::LKB_ResidueInfo> std::__1::shared_ptr<core::scoring::lkball::LKB_ResidueInfo>::make_shared<core::conformation::Residue const&>(core::conformation::Residue const&) + 83 6 rosetta_beta_6.06_x86_64-apple-darw 0x000000010259d7c9 protocols::ligand_docking::ga_ligand_dock::GridScorer::score(core::pose::Pose&, protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, bool) + 777 7 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103db1642 core::optimization::ArmijoLineMinimization::Armijo(double, core::optimization::func_1d&) + 130 8 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103db135e core::optimization::ArmijoLineMinimization::operator()(utility::vector1<double, std::__1::allocator<double>>&, utility::vector1<double, std::__1::allocator<double>>&) + 494 9 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103dba0b9 core::optimization::Minimizer::lbfgs(utility::vector1<double, std::__1::allocator<double>>&, double&, core::optimization::ConvergenceTest&, std::__1::shared_ptr<core::optimization::LineMinimizationAlgorithm>, int, bool) const + 3177 10 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103db502f core::optimization::Minimizer::run(utility::vector1<double, std::__1::allocator<double>>&) + 6975 11 rosetta_beta_6.06_x86_64-apple-darw 0x000000010257c44c protocols::ligand_docking::ga_ligand_dock::LigandAligner::apply(protocols::ligand_docking::ga_ligand_dock::LigandConformer&) + 5308 12 rosetta_beta_6.06_x86_64-apple-darw 0x00000001025dbc1f protocols::ligand_docking::ga_ligand_dock::GALigandDock::generate_perturbed_structures(protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, std::__1::shared_ptr<protocols::ligand_docking::ga_ligand_dock::GridScorer>, unsigned long, protocols::ligand_docking::ga_ligand_dock::LigandAligner) const + 4799 13 rosetta_beta_6.06_x86_64-apple-darw 0x00000001025d4315 protocols::ligand_docking::ga_ligand_dock::GALigandDock::run_docking(protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, std::__1::shared_ptr<protocols::ligand_docking::ga_ligand_dock::GridScorer>, protocols::ligand_docking::ga_ligand_dock::LigandAligner&, protocols::ligand_docking::ga_ligand_dock::OutputStructureStore&) + 357 14 rosetta_beta_6.06_x86_64-apple-darw 0x00000001025ca32e protocols::ligand_docking::ga_ligand_dock::GALigandDock::apply(core::pose::Pose&) + 14846 15 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103bbbfd8 protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&) + 1224 16 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103bb462f protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&) + 1935 17 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103aa122c protocols::jd2::JobDistributor::run_one_job(std::__1::shared_ptr<protocols::moves::Mover>&, long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>>&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>>&, unsigned long&, unsigned long&, bool) + 8204 18 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103a9e572 protocols::jd2::JobDistributor::go_main(std::__1::shared_ptr<protocols::moves::Mover>) + 194 19 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103a99612 protocols::jd2::FileSystemJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 66 20 rosetta_beta_6.06_x86_64-apple-darw 0x0000000103a8f0e6 protocols::jd2::BOINCJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 246 21 rosetta_beta_6.06_x86_64-apple-darw 0x0000000100fdd254 main + 22020 22 dyld 0x000000020999e781 start + 3457 ------------------------- End developer's backtrace -------------------------- Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. ====================================================== DONE :: 1 starting structures 23417 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 BOINC :: Watchdog shutting down... 17:46:18 (92285): called boinc_finish(0) </stderr_txt> ]]>
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