Task 1624589097

Name	RosettaVS_SAVE_ALL_OUT_NOJRAN_M2_real_specificity_fulldb_IGNORE_THE_REST_BwiIOn_3_5189_3022817_1_0
Workunit	1445294408
Created	12 Dec 2025, 21:14:25 UTC
Sent	12 Dec 2025, 21:16:50 UTC
Report deadline	15 Dec 2025, 21:16:50 UTC
Received	21 Dec 2025, 16:59:02 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	3779585
Run time	2 hours 38 min 4 sec
CPU time	2 hours 34 min 59 sec
Validate state	Valid
Credit	152.38
Device peak FLOPS	6.78 GFLOPS
Application version	Rosetta Beta v6.06 x86_64-pc-linux-gnu
Peak working set size	1,153.83 MB
Peak swap size	1,306.34 MB
Peak disk usage	24.80 MB
Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu @M2_real_specificity_fulldb_BwiIOn_3_5189.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_f5ae1de8e1/database
Starting watchdog...
Watchdog active.
Starting watchdog...
Watchdog active.
Starting watchdog...
Watchdog active.
Starting watchdog...
Watchdog active.
Starting watchdog...
Watchdog active.

[ ERROR ]: Caught exception:


File: src/core/kinematics/Stub.cc:106
Error in Stub::from_four_points(): 

File: src/numeric/xyzVector.hh:654
Cannot create normalized xyzVector from vector of length() zero.  Error occurred when trying to normalize the vector between points A and B.  A=[197248342529066551897751552.000000,-311373111612975664282468352.000000,-116239977526027796225196032.000000], B=[197248342529066551897751552.000000,-311373111612975664282468352.000000,-116239977526027796225196032.000000].
 ------------------------ Begin developer's backtrace ------------------------- 
BACKTRACE:
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x85813e4) [0x55c4c9c963e4]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x8599fb4) [0x55c4c9caefb4]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0xc050e1) [0x55c4c231a0e1]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x762802f) [0x55c4c8d3d02f]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x7639cbf) [0x55c4c8d4ecbf]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x32941fe) [0x55c4c49a91fe]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x6232f32) [0x55c4c7947f32]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x5ae370e) [0x55c4c71f870e]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x5ae9c95) [0x55c4c71fec95]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x32a05ae) [0x55c4c49b55ae]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x32a08bd) [0x55c4c49b58bd]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x32ab7fe) [0x55c4c49c07fe]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x32b3eac) [0x55c4c49c8eac]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x318962c) [0x55c4c489e62c]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x318f35c) [0x55c4c48a435c]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x57d84d1) [0x55c4c6eed4d1]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x57d8bae) [0x55c4c6eedbae]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x57d911e) [0x55c4c6eee11e]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x57da356) [0x55c4c6eef356]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x5539fda) [0x55c4c6c4efda]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x553b4fe) [0x55c4c6c504fe]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x5853b97) [0x55c4c6f68b97]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0x585255a) [0x55c4c6f6755a]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0xce0773) [0x55c4c23f5773]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7feaa6a18d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7feaa6a18e40]
../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu(+0xf22fca) [0x55c4c2637fca]
 ------------------------- End developer's backtrace -------------------------- 
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Starting watchdog...
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Too many restarts with no progress. Keep application in memory while preempted.
======================================================
DONE ::     1 starting structures  9299.61 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================
BOINC :: WS_max 0

BOINC :: Watchdog shutting down...
17:10:24 (15212): called boinc_finish(0)
Starting watchdog...
Watchdog active.
Too many restarts with no progress. Keep application in memory while preempted.
WARNING! attempt to gzip file default.out failed: file does not exist.
======================================================
DONE ::     1 starting structures  9299.67 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================
BOINC :: WS_max 0

BOINC :: Watchdog shutting down...
17:58:11 (22202): called boinc_finish(0)

</stderr_txt>
]]>