Task 1590510949

Name rb_11_25_645278_638841_ab_t000__robetta_IGNORE_THE_REST_08_12_3010031_21_0
Workunit 1415080786
Created 25 Nov 2024, 13:53:44 UTC
Sent 25 Nov 2024, 14:14:51 UTC
Report deadline 28 Nov 2024, 14:14:51 UTC
Received 25 Nov 2024, 19:31:19 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION
Computer ID 6063029
Run time 5 hours 5 min 57 sec
CPU time 5 hours 4 min 46 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 3.75 GFLOPS
Application version Rosetta v4.20
windows_x86_64
Peak working set size 1,069.76 MB
Peak swap size 1,064.39 MB
Peak disk usage 11.77 MB

Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code 3221225477 (0xc0000005)</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_11_25_645278_638841_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -in:file:boinc_wu_zip rb_11_25_645278_638841_ab_t000__robetta.zip -frag3 rb_11_25_645278_638841_ab_t000__robetta.200.3mers.index.gz -fragA rb_11_25_645278_638841_ab_t000__robetta.200.12mers.index.gz -fragB rb_11_25_645278_638841_ab_t000__robetta.200.8mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2063698
Using database: database_357d5d93529_n_methyl\minirosetta_database
failed to create shared mem segment: rosetta Size: 25001680


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x0000000140C07698 write attempt to address 0x017D7EC9

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 7.9.0


Dump Timestamp    : 11/25/24 11:28:01
Install Directory : C:\Program Files\BOINC\
Data Directory    : C:\ProgramData\BOINC
Project Symstore  : https://boinc.bakerlab.org/rosetta/symstore
LoadLibraryA( C:\ProgramData\BOINC\dbghelp.dll ): GetLastError = 126
Loaded Library    : dbghelp.dll
LoadLibraryA( C:\ProgramData\BOINC\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( C:\ProgramData\BOINC\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( C:\ProgramData\BOINC\version.dll ): GetLastError = 126
Loaded Library    : version.dll
Debugger Engine   : 4.0.5.0
Symbol Search Path: C:\ProgramData\BOINC\slots\2;C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta;srv*C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta\symbols*https://boinc.bakerlab.org/rosetta/symstore


ModLoad: 000000003f950000 00000000057ef000 C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta\rosetta_4.20_windows_x86_64.exe (-exported- Symbols Loaded)
    Linked PDB Filename   : C:\cygwin64\home\boinc\4.17\Rosetta\main\source\ide\VisualStudio\x64\BoincRelease\rosetta_4.20_windows_x86_64.pdb

ModLoad: 0000000076e30000 00000000001a9000 C:\windows\SYSTEM32\ntdll.dll (6.1.7601.17725) (-exported- Symbols Loaded)
    Linked PDB Filename   : ntdll.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000768a0000 000000000011f000 C:\windows\system32\kernel32.dll (6.1.7601.17651) (-exported- Symbols Loaded)
    Linked PDB Filename   : kernel32.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fd4b0000 000000000006c000 C:\windows\system32\KERNELBASE.dll (6.1.7601.17651) (-exported- Symbols Loaded)
    Linked PDB Filename   : kernelbase.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fdf70000 000000000004d000 C:\windows\system32\WS2_32.dll (6.1.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : ws2_32.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fdfc0000 000000000009f000 C:\windows\system32\msvcrt.dll (7.0.7601.17744) (-exported- Symbols Loaded)
    Linked PDB Filename   : msvcrt.pdb
    File Version          : 7.0.7601.17744 (win7sp1_gdr.111215-1535)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 7.0.7601.17744

ModLoad: 00000000fd670000 000000000012d000 C:\windows\system32\RPCRT4.dll (6.1.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : rpcrt4.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000ff0b0000 0000000000008000 C:\windows\system32\NSI.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : nsi.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 0000000076d30000 00000000000fa000 C:\windows\system32\USER32.dll (6.1.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : user32.pdb
    File Version          : 6.1.7601.17514 (win7sp1_rtm.101119-1850)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7601.17514

ModLoad: 00000000fd840000 0000000000067000 C:\windows\system32\GDI32.dll (6.1.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : gdi32.pdb
    File Version          : 6.1.7601.17514 (win7sp1_rtm.101119-1850)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7601.17514

ModLoad: 00000000fd660000 000000000000e000 C:\windows\system32\LPK.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : lpk.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fda90000 00000000000c9000 C:\windows\system32\USP10.dll (1.626.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : usp10.pdb
    File Version          : 1.0626.7601.17514 (win7sp1_rtm.101119-1850)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft(R) Uniscribe Unicode script processor
    Product Version       : 1.0626.7601.17514

ModLoad: 00000000fee70000 00000000000db000 C:\windows\system32\ADVAPI32.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : advapi32.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fee50000 000000000001f000 C:\windows\SYSTEM32\sechost.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : sechost.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fdc00000 000000000002e000 C:\windows\system32\IMM32.DLL (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : imm32.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fdc50000 0000000000109000 C:\windows\system32\MSCTF.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : msctf.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fc540000 000000000002d000 C:\windows\system32\ntmarta.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : ntmarta.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000fedf0000 0000000000052000 C:\windows\system32\WLDAP32.dll (6.1.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : wldap32.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385

ModLoad: 00000000f08c0000 0000000000125000 C:\windows\system32\dbghelp.dll (6.1.7601.17514) (-exported- Symbols Loaded)
    Linked PDB Filename   : dbghelp.pdb
    File Version          : 6.1.7601.17514 (win7sp1_rtm.101119-1850)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7601.17514

ModLoad: 00000000fc570000 000000000000c000 C:\windows\system32\version.dll (6.1.7600.16385) (-exported- Symbols Loaded)
    Linked PDB Filename   : version.pdb
    File Version          : 6.1.7600.16385 (win7_rtm.090713-1255)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 6.1.7600.16385



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 7, Write: 275, Other 61

- I/O Transfers Counters -
Read: 17194, Write: 285, Other 2728

- Paged Pool Usage -
QuotaPagedPoolUsage: 257200, QuotaPeakPagedPoolUsage: 257376
QuotaNonPagedPoolUsage: 5400, QuotaPeakNonPagedPoolUsage: 5400

- Virtual Memory Usage -
VirtualSize: 13234176, PeakVirtualSize: 529506304

- Pagefile Usage -
PagefileUsage: 13234176, PeakPagefileUsage: 13234176

- Working Set Size -
WorkingSetSize: 29466624, PeakWorkingSetSize: 29466624, PageFaultCount: 7208

*** Dump of thread ID 2288 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x0000000140C07698 write attempt to address 0x017D7EC9

- Registers -
rax=0000000000000000 rbx=0000000044cfccf8 rcx=00000000449a81b0 rdx=0000000044cfd110 rsi=00000000062d8900 rdi=0000000000000022
r8=0000000006129e78 r9=0000000000000000 r10=0000000000000000 r11=0000000000000207 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000040c07698 rsp=000000000612a0a0 rbp=0000000000000000
cs=0033  ss=002b  ds=002b  es=002b  fs=0053  gs=002b             efl=00010206

- Callstack -
ChildEBP RetAddr  Args to Child
0612a0c0 40c07917 44cfccf8 00000000 449a8128 00000022 rosetta_4.20_windows_x86_64!xmlCheckHTTPInput+0x0 
0612a200 3fdcf073 00000000 00000000 00000000 00000000 rosetta_4.20_windows_x86_64!xmlCheckHTTPInput+0x0 
0613fe30 3fddb215 00000000 00000000 44cfccf8 00000000 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 
0613fe70 768b652d 00000000 00000000 00000000 00000000 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 
0613fea0 76e5c521 00000000 00000000 00000000 00000000 kernel32!BaseThreadInitThunk+0x0 
0613fef0 00000000 00000000 00000000 00000000 00000000 ntdll!RtlUserThreadStart+0x0 


*** Debug Message Dump ****


*** Foreground Window Data ***
    Window Name      : 
    Window Class     : 
    Window Process ID: 0
    Window Thread ID : 0

Exiting...

</stderr_txt>
]]>




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