Task 1589237226
| Name | 8a_hal_s_hal_8aa_3jp6878_d1_3_0001_SAVE_ALL_OUT_3005940_133_0 |
| Workunit | 1413977415 |
| Created | 8 Nov 2024, 12:16:12 UTC |
| Sent | 8 Nov 2024, 12:40:48 UTC |
| Report deadline | 11 Nov 2024, 12:40:48 UTC |
| Received | 8 Nov 2024, 14:04:56 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 1 (0x00000001) Unknown error code |
| Computer ID | 6281899 |
| Run time | 3 min 25 sec |
| CPU time | 26 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 5.12 GFLOPS |
| Application version | Rosetta Beta v6.06 windows_x86_64 |
| Peak working set size | 41.99 MB |
| Peak swap size | 14.79 MB |
| Peak disk usage | 1.12 MB |
Stderr output
<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
Funci�n incorrecta.
(0x1) - exit code 1 (0x1)</message>
<stderr_txt>
v
Permission denied
error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/DonStrength.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HBAccHybridization.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/schema.sql
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HBAccChemType.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HBondWeightType.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HBDonChemType.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HybridizationType.csv
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error: cannot create ./database/scoring/score_functions/hbonds/ref2015_params/HBSeqSep.csv
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error: cannot create ./database/scoring/score_functions/sc/sc_radii.lib
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error: cannot create ./database/scoring/score_functions/InterchainPotential/interchain_pair_log.txt
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error: cannot create ./database/scoring/score_functions/InterchainPotential/interchain_env_log.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_pair_ang_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_pair_dih_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_env_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_pair_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_cbeta_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_hb_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_smooth_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_dfire_params.txt
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error: cannot create ./database/scoring/score_functions/centroid_smooth/cen_rot_dpair_params.txt
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error: cannot create ./database/scoring/score_functions/DDPscore/interface_ddp_score.txt
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error: cannot create ./database/scoring/score_functions/p_aa_abego3.dat
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Haro_scOrbH.large_bins
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Hpol_scOrbH.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_ACO.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DOA_OrbOrb.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_AOH_Hpol_bbOrbH.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DOO_OrbOrb.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Hpol_bbOrbH.large_bins
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Haro_scOrbH.small_angle_bins
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_AOH_Hpol_scOrbH.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_AOD_OrbOrb.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Hpol_scOrbH.small_angle_bins
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Hpol_bbOrbH.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_AOO_OrbOrb.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Haro_scOrbH.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Hpol_bbOrbH.small_angle_bins
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_AOH_Haro_scOrbH.txt
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error: cannot create ./database/scoring/score_functions/orbitals/BiCubic_DHO_Hpol_scOrbH.large_bins
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error: cannot create ./database/scoring/score_functions/elec_cp_reps.dat
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error: cannot create ./database/scoring/score_functions/goap/dist_table.dat.gz
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error: cannot create ./database/scoring/score_functions/goap/angle_definitions.dat
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error: cannot create ./database/scoring/score_functions/goap/angle_table.dat.gz
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error: cannot create ./database/scoring/score_functions/carbohydrates/CHI_energy_function_for_beta_linkages.params
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error: cannot create ./database/scoring/score_functions/carbohydrates/CHI_energy_function_for_beta6_linkages.params
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error: cannot create ./database/scoring/score_functions/carbohydrates/CHI_energy_function_for_alpha6_linkages.params
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error: cannot create ./database/scoring/score_functions/carbohydrates/CHI_energy_function_for_2ax_3eq_4ax_linkages.params
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error: cannot create ./database/scoring/score_functions/carbohydrates/CHI_energy_function_for_2eq_3ax_4eq_linkages.params
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error: cannot create ./database/scoring/score_functions/carbohydrates/CHI_energy_function_for_alpha_linkages.params
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error: cannot create ./database/scoring/score_functions/EnvPairPotential/cbeta_den.txt
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error: cannot create ./database/scoring/score_functions/EnvPairPotential/cenpack_log.txt
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error: cannot create ./database/scoring/score_functions/EnvPairPotential/env_log.txt
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error: cannot create ./database/scoring/score_functions/EnvPairPotential/pair_log.txt
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error: cannot create ./database/scoring/score_functions/P_AA_SS_cen6/P_AA_SS.txt
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error: cannot create ./database/scoring/score_functions/P_AA_SS_cen6/P_AA_SS_cen6.txt
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error: cannot create ./database/scoring/score_functions/disulfides/fa_SS_distance_score
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error: cannot create ./database/scoring/score_functions/disulfides/centroid_backbone_dihedral_score
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error: cannot create ./database/scoring/score_functions/disulfides/centroid_CaCbCbCa_dihedral_score
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error: cannot create ./database/scoring/score_functions/disulfides/fa_CbSSCb_dihedral_score
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error: cannot create ./database/scoring/score_functions/disulfides/centroid_CaCbCb_angle_score
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error: cannot create ./database/scoring/score_functions/disulfides/fa_CaCbS_angle_score
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error: cannot create ./database/scoring/score_functions/disulfides/centroid_distance_score
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error: cannot create ./database/scoring/score_functions/custom_pair_distance/fa_custom_pair_distance
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error: cannot create ./database/scoring/score_functions/custom_pair_distance/pos_charge_repulsion
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error: cannot create ./database/scoring/score_functions/custom_pair_distance/neg_charge_repulsion
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error: cannot create ./database/scoring/score_functions/p_aa_ss.dat
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error: cannot create ./database/scoring/score_functions/sap_sasa_calib.dat
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error: cannot create ./database/scoring/score_functions/carbon_hbond/ch_o_bond_potential_near_min_yf.dat
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error: cannot create ./database/scoring/score_functions/carbon_hbond/ch_o_bond_potential_2.5Acutoff_smooth.dat
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error: cannot create ./database/scoring/score_functions/carbon_hbond/ch_o_bond_potential.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ASN_2HD2_ND2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_HIS_HD1_ND1.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ARG_2HH1_NH1.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_LYS_2HZ_NZ.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_TYR_OH_CZ.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_GLN_2HE2_NE2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_THR_OG1_CB.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ARG_2HH2_NH2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ASP_OD1_CG.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_TRP_HE1_NE1.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_GLU_OE1_CD.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_LYS_3HZ_NZ.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_GLN_OE1_CG.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_HIS_HE2_NE2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_GLU_OE2_CD.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ASP_OD2_CG.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_LIG_ACC_SP3.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ASN_1HD2_ND2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ALL_O_C.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ALL_H_N.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ARG_1HH1_NH1.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_LIG_DON.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ARG_HE_NE.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_HIS_ND1_XXX.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_LYS_1HZ_NZ.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ASN_OD1_CG.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_GLN_1HE2_NE2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_LIG_ACC_SP2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ARG_1HH2_NH2.dat
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error: cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_SER_OG_CB.dat
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error: cannot create ./database/scoring/score_functions/aa_composition/sample_composition.comp
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error: cannot create ./database/scoring/score_functions/aa_composition/exactly_one_trp.comp
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error: cannot create ./database/scoring/score_functions/aa_composition/twenty_percent_pro.comp
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error: cannot create ./database/scoring/score_functions/aa_composition/exactly_one_ala.comp
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error: cannot create ./database/scoring/score_functions/aa_composition/two_aromatics.comp
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error: cannot create ./database/scoring/score_functions/aa_composition/ten_percent_aromatic.comp
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error: cannot create ./database/scoring/score_functions/aa_repeat_energy/default_repeat_penalty_table.rpt_pen
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error: cannot create ./database/scoring/score_functions/SurfacePotential/hpatch_score.txt
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error: cannot create ./database/scoring/score_functions/SurfacePotential/surface_score.txt
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error: cannot create ./database/scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt
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error: cannot create ./database/scoring/sasa_scores/sasapack_datafile_v1.txt
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error: cannot create ./database/scoring/sasa_scores/avge_datafile_score12prime_v1.txt
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error: cannot create ./database/scoring/qsar/lj_table.txt
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error: cannot create ./database/scoring/qsar/weights/standard.wts
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error: cannot create ./database/scoring/qsar/shape_histogram_data.js
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error: cannot create ./database/scoring/qsar/hb_table.txt
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error: cannot create ./database/scoring/ProQ/ProQM_model.1.linear
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error: cannot create ./database/scoring/ProQ/ProQM_model.2.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.5.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.3.linear
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error: cannot create ./database/scoring/ProQ/ProQM_model.3.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.4.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQM_model.3.linear
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error: cannot create ./database/scoring/ProQ/ProQ2_model.1.linear
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error: cannot create ./database/scoring/ProQ/ProQM_model.5.linear
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error: cannot create ./database/scoring/ProQ/ProQM_model.1.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.5.linear
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error: cannot create ./database/scoring/ProQ/ProQM_model.4.linear
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error: cannot create ./database/scoring/ProQ/ProQ2_model.4.linear
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error: cannot create ./database/scoring/ProQ/ProQ2_model.1.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.2.linear
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error: cannot create ./database/scoring/ProQ/ProQM_model.5.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.2.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQM_model.4.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQ2_model.3.linear_retrained_for_rosetta
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error: cannot create ./database/scoring/ProQ/ProQM_model.2.linear
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error: cannot create ./database/scoring/AtomVDW/atom_vdw.txt
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error: cannot create ./database/scoring/dna/bound_dna_dihedrals.txt
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error: cannot create ./database/scoring/dna/dna_bs_bp.dat
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error: cannot create ./database/scoring/dna/dna_env_pair.dat
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warning: set times/attribs failed for ./database/virtual_enzymes/kinases/h_sapiens/
warning: set times/attribs failed for ./database/virtual_enzymes/kinases/
warning: set times/attribs failed for ./database/virtual_enzymes/glycosyltransferases/h_sapiens/
warning: set times/attribs failed for ./database/virtual_enzymes/glycosyltransferases/c_jejuni/
warning: set times/attribs failed for ./database/virtual_enzymes/glycosyltransferases/
warning: set times/attribs failed for ./database/virtual_enzymes/N-terminal_acetyltransferases/s_solfataricus/
warning: set times/attribs failed for ./database/virtual_enzymes/N-terminal_acetyltransferases/h_sapiens/
warning: set times/attribs failed for ./database/virtual_enzymes/N-terminal_acetyltransferases/
warning: set times/attribs failed for ./database/virtual_enzymes/DNA_methyltransferases/h_sapiens/
warning: set times/attribs failed for ./database/virtual_enzymes/DNA_methyltransferases/
warning: set times/attribs failed for ./database/virtual_enzymes/
warning: set times/attribs failed for ./database/utilities/
warning: set times/attribs failed for ./database/symmetry/cyclic/
warning: set times/attribs failed for ./database/symmetry/
warning: set times/attribs failed for ./database/sequence/tcell_ep_9mers/
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warning: set times/attribs failed for ./database/sequence/mhc_rank_svm_scores/
warning: set times/attribs failed for ./database/sequence/mhc_pssms/
warning: set times/attribs failed for ./database/sequence/
warning: set times/attribs failed for ./database/scoring/weights/stepwise/rna/deprecated/
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warning: set times/attribs failed for ./database/scoring/weights/rna/denovo/
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warning: set times/attribs failed for ./database/scoring/score_functions/unfolded/
warning: set times/attribs failed for ./database/scoring/score_functions/split_unfolded/
warning: set times/attribs failed for ./database/scoring/score_functions/sc/
warning: set times/attribs failed for ./database/scoring/score_functions/saxs/
warning: set times/attribs failed for ./database/scoring/score_functions/rama/shapovalov/kappa75/
warning: set times/attribs failed for ./database/scoring/score_functions/rama/shapovalov/kappa50/
warning: set times/attribs failed for ./database/scoring/score_functions/rama/shapovalov/kappa37.5/
warning: set times/attribs failed for ./database/scoring/score_functions/rama/shapovalov/kappa25/
warning: set times/attribs failed for ./database/scoring/score_functions/rama/shapovalov/
warning: set times/attribs failed for ./database/scoring/score_functions/rama/oligourea/
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warning: set times/attribs failed for ./database/scoring/score_functions/pointwater/norm_trunc6/
warning: set times/attribs failed for ./database/scoring/score_functions/pointwater/
warning: set times/attribs failed for ./database/scoring/score_functions/orbitals/
warning: set times/attribs failed for ./database/scoring/score_functions/omega/
warning: set times/attribs failed for ./database/scoring/score_functions/netcharge/
warning: set times/attribs failed for ./database/scoring/score_functions/mhc_epitope/
warning: set times/attribs failed for ./database/scoring/score_functions/lipid_orientation/
warning: set times/attribs failed for ./database/scoring/score_functions/hbonds/sp2_params/
warning: set times/attribs failed for ./database/scoring/score_functions/hbonds/sp2_elec_params/
warning: set times/attribs failed for ./database/scoring/score_functions/hbonds/score12_params/
warning: set times/attribs failed for ./database/scoring/score_functions/hbonds/ref2015_params/
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warning: set times/attribs failed for ./database/scoring/score_functions/hbonds/
warning: set times/attribs failed for ./database/scoring/score_functions/goap/
warning: set times/attribs failed for ./database/scoring/score_functions/generic_potential/
warning: set times/attribs failed for ./database/scoring/score_functions/facts/test/
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warning: set times/attribs failed for ./database/scoring/score_functions/disulfides/
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warning: set times/attribs failed for ./database/scoring/score_functions/centroid_smooth/
warning: set times/attribs failed for ./database/scoring/score_functions/carbon_hbond/
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warning: set times/attribs failed for ./database/scoring/score_functions/bondlength_bondangle_talaris/
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warning: set times/attribs failed for ./database/scoring/score_functions/SurfacePotential/
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warning: set times/attribs failed for ./database/scoring/score_functions/PairEPotential/
warning: set times/attribs failed for ./database/scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/
warning: set times/attribs failed for ./database/scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/
warning: set times/attribs failed for ./database/scoring/score_functions/P_AA_pp/shapovalov/2.5deg/
warning: set times/attribs failed for ./database/scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/
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warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/water/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/terpenes/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/nucleic/rna/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/nucleic/dna/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/nucleic/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/metals/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/coenzymes/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/carbohydrates/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/branching/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/patches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/metapatches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/fa_standard/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/coarse_two_bead/residue_types/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/coarse_two_bead/patches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/coarse_two_bead/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/coarse_rna/residue_types/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/coarse_rna/patches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/coarse_rna/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_rot/residue_types/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_rot/patches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_rot/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_pre_talaris2013/patches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid_pre_talaris2013/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/staple/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/rosetta_specific/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/nucleic/rna_phenix/ideal_geometry/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/nucleic/rna_phenix/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/nucleic/dna/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/nucleic/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/metal_ions/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/membrane/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/lipids/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/l-ncaa/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/l-caa/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/extra/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/coenzymes/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/trioses/dihydroxyacetones/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/trioses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/tetroses/erythruloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/tetroses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/pentoses/xyluloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/pentoses/ribuloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/pentoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/octoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/nonoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/hexoses/tagatoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/hexoses/sorboses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/hexoses/psicoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/hexoses/fructoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/hexoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/heptoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/ketoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/trioses/glyceraldehydes/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/trioses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/tetroses/threoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/tetroses/erythroses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/tetroses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/pentoses/xyloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/pentoses/riboses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/pentoses/lyxoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/pentoses/arabinoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/pentoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/taloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/mannoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/idoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/guloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/glucoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/galactoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/altroses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/alloses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/carbohydrates/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/achiral_ncaa/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/residue_types/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/patches/nucleic/rna/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/patches/nucleic/dna/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/patches/nucleic/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/patches/carbohydrates/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/patches/branching/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/patches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/metapatches/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/centroid/
warning: set times/attribs failed for ./database/chemical/residue_type_sets/
warning: set times/attribs failed for ./database/chemical/pdb_components/override/
warning: set times/attribs failed for ./database/chemical/pdb_components/
warning: set times/attribs failed for ./database/chemical/orbital_type_sets/fa_standard/
warning: set times/attribs failed for ./database/chemical/orbital_type_sets/
warning: set times/attribs failed for ./database/chemical/mm_atom_type_sets/fa_standard/
warning: set times/attribs failed for ./database/chemical/mm_atom_type_sets/
warning: set times/attribs failed for ./database/chemical/gasteiger/default/
warning: set times/attribs failed for ./database/chemical/gasteiger/
warning: set times/attribs failed for ./database/chemical/element_sets/default/
warning: set times/attribs failed for ./database/chemical/element_sets/
warning: set times/attribs failed for ./database/chemical/csd_atom_type_sets/fa_standard/
warning: set times/attribs failed for ./database/chemical/csd_atom_type_sets/
warning: set times/attribs failed for ./database/chemical/carbohydrates/linkage_conformers/
warning: set times/attribs failed for ./database/chemical/carbohydrates/common_glycans/
warning: set times/attribs failed for ./database/chemical/carbohydrates/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/fa_standard_talaris/extras/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/fa_standard_talaris/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/fa_standard_genpot/extras/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/fa_standard_genpot/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/fa_standard/extras/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/fa_standard/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/coarse_two_bead/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/coarse_rna/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/centroid_rot/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/centroid_min/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/centroid/
warning: set times/attribs failed for ./database/chemical/atom_type_sets/
warning: set times/attribs failed for ./database/chemical/amoeba/
warning: set times/attribs failed for ./database/chemical/
warning: set times/attribs failed for ./database/additional_protocol_data/
warning: set times/attribs failed for ./database/
Using database: database\
error: cannot create ./native.pdb
Permission denied
error: cannot create ./seq.txt
Permission denied
ERROR: Unable to open file: database\chemical/residue_type_sets/fa_standard/residue_types.txt
ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 147
BOINC:: Error reading and gzipping output datafile: default.out
14:47:30 (10200): called boinc_finish(1)
</stderr_txt>
]]>
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