Task 1584680383

Name	RosettaVS_SAVE_ALL_OUT_NOJRAN_SETDB1_8UWP_boinc_fulldb_IGNORE_THE_REST_6hkEP2_9_4779_2980890_3_1
Workunit	1409766010
Created	15 Oct 2024, 23:11:38 UTC
Sent	15 Oct 2024, 23:11:39 UTC
Report deadline	18 Oct 2024, 23:11:39 UTC
Received	18 Oct 2024, 5:02:40 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	6289061
Run time	9 hours 29 min 3 sec
CPU time	9 hours 12 min 57 sec
Validate state	Valid
Credit	88.98
Device peak FLOPS	1.00 GFLOPS
Application version	Rosetta Beta v6.06 x86_64-apple-darwin
Peak working set size	2,198.86 MB
Peak swap size	6,633.64 MB
Peak disk usage	24.59 MB
Stderr output

<core_client_version>7.24.3</core_client_version>
<![CDATA[
<stderr_txt>
command: rosetta_beta_6.06_x86_64-apple-darwin @SETDB1_8UWP_boinc_fulldb_6hkEP2_9_4779.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_f5ae1de8e1/database
Starting watchdog...
Watchdog active.

[ ERROR ]: Caught exception:


File: src/core/kinematics/Stub.cc:106
Error in Stub::from_four_points(): 

File: src/numeric/xyzVector.hh:654
Cannot create normalized xyzVector from vector of length() zero.  Error occurred when trying to normalize the vector between points A and B.  A=[5838738152445739727496008433664.000000,19371300733322784747121375444992.000000,10183008953274315586224198254592.000000], B=[5838738152445739727496008433664.000000,19371300733322784747121375444992.000000,10183008953274315586224198254592.000000].
 ------------------------ Begin developer's backtrace ------------------------- 
BACKTRACE:
0   rosetta_beta_6.06_x86_64-apple-darwin 0x0000000110720ec7 backtrace_string(int) + 87
1   rosetta_beta_6.06_x86_64-apple-darwin 0x0000000110734a1d utility::excn::Exception::Exception(char const*, int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 205
2   rosetta_beta_6.06_x86_64-apple-darwin 0x0000000110311037 core::kinematics::Stub::from_four_points(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&) + 2071
3   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010fc608cf core::scoring::lkball::LKB_ResidueInfo::build_waters(core::conformation::Residue const&, bool) + 895
4   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010fc601ae core::scoring::lkball::LKB_ResidueInfo::LKB_ResidueInfo(core::conformation::Residue const&, bool) + 270
5   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d312b53 std::__1::shared_ptr<core::scoring::lkball::LKB_ResidueInfo> std::__1::shared_ptr<core::scoring::lkball::LKB_ResidueInfo>::make_shared<core::conformation::Residue const&>(core::conformation::Residue const&&&) + 83
6   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d3017c9 protocols::ligand_docking::ga_ligand_dock::GridScorer::score(core::pose::Pose&, protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, bool) + 777
7   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010eb15642 core::optimization::ArmijoLineMinimization::Armijo(double, core::optimization::func_1d&) + 130
8   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010eb1535e core::optimization::ArmijoLineMinimization::operator()(utility::vector1<double, std::__1::allocator<double> >&, utility::vector1<double, std::__1::allocator<double> >&) + 494
9   rosetta_beta_6.06_x86_64-apple-darwin 0x000000010eb1e0b9 core::optimization::Minimizer::lbfgs(utility::vector1<double, std::__1::allocator<double> >&, double&, core::optimization::ConvergenceTest&, std::__1::shared_ptr<core::optimization::LineMinimizationAlgorithm>, int, bool) const + 3177
10  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010eb1902f core::optimization::Minimizer::run(utility::vector1<double, std::__1::allocator<double> >&) + 6975
11  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d31052c protocols::ligand_docking::ga_ligand_dock::GridScorer::minimizer_loop(protocols::ligand_docking::ga_ligand_dock::LigandConformer&, core::optimization::MinimizerOptions const&) + 1884
12  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d30d770 protocols::ligand_docking::ga_ligand_dock::GridScorer::optimize(protocols::ligand_docking::ga_ligand_dock::LigandConformer&, utility::vector1<double, std::__1::allocator<double> >, utility::vector1<utility::vector1<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer> >, std::__1::allocator<utility::vector1<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer> > > >&, protocols::ligand_docking::ga_ligand_dock::RotamerPairEnergies&) + 752
13  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d31a4b4 protocols::ligand_docking::ga_ligand_dock::GAOptimizer::optimize_generation(utility::vector1<protocols::ligand_docking::ga_ligand_dock::LigandConformer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::LigandConformer> >&, utility::vector1<double, std::__1::allocator<double> > const&) + 356
14  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d313e52 protocols::ligand_docking::ga_ligand_dock::GAOptimizer::run(utility::vector1<protocols::ligand_docking::ga_ligand_dock::LigandConformer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::LigandConformer> >&) + 2850
15  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d33847b protocols::ligand_docking::ga_ligand_dock::GALigandDock::run_docking(protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, std::__1::shared_ptr<protocols::ligand_docking::ga_ligand_dock::GridScorer>, protocols::ligand_docking::ga_ligand_dock::LigandAligner&, protocols::ligand_docking::ga_ligand_dock::OutputStructureStore&) + 715
16  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010d32e32e protocols::ligand_docking::ga_ligand_dock::GALigandDock::apply(core::pose::Pose&) + 14846
17  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010e91ffd8 protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&) + 1224
18  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010e91862f protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&) + 1935
19  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010e80522c protocols::jd2::JobDistributor::run_one_job(std::__1::shared_ptr<protocols::moves::Mover>&, long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, unsigned long&, unsigned long&, bool) + 8204
20  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010e802572 protocols::jd2::JobDistributor::go_main(std::__1::shared_ptr<protocols::moves::Mover>) + 194
21  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010e7fd612 protocols::jd2::FileSystemJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 66
22  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010e7f30e6 protocols::jd2::BOINCJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 246
23  rosetta_beta_6.06_x86_64-apple-darwin 0x000000010bd41254 main + 22020
24  libdyld.dylib                       0x00007fff5c0e33d5 start + 1
 ------------------------- End developer's backtrace -------------------------- 
======================================================
DONE ::     3 starting structures  33177.3 cpu seconds
This process generated      3 decoys from       3 attempts
======================================================
BOINC :: WS_max 2.30386e+09

BOINC :: Watchdog shutting down...
14:02:22 (73456): called boinc_finish(0)

</stderr_txt>
]]>