Task 1584477640

Name	RosettaVS_SAVE_ALL_OUT_NOJRAN_SETDB1_8UWP_boinc_fulldb_IGNORE_THE_REST_6hkEP2_6_764_2980886_2_0
Workunit	1409726422
Created	12 Oct 2024, 17:31:36 UTC
Sent	12 Oct 2024, 18:05:34 UTC
Report deadline	15 Oct 2024, 18:05:34 UTC
Received	13 Oct 2024, 2:14:34 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	6292942
Run time	8 hours 8 min 42 sec
CPU time	7 hours 50 min 35 sec
Validate state	Valid
Credit	336.53
Device peak FLOPS	4.96 GFLOPS
Application version	Rosetta Beta v6.06 x86_64-apple-darwin
Peak working set size	2,589.66 MB
Peak swap size	35,899.10 MB
Peak disk usage	24.79 MB
Stderr output

<core_client_version>8.0.0</core_client_version>
<![CDATA[
<stderr_txt>
command: rosetta_beta_6.06_x86_64-apple-darwin @SETDB1_8UWP_boinc_fulldb_6hkEP2_6_764.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_f5ae1de8e1/database
Starting watchdog...
Watchdog active.

[ ERROR ]: Caught exception:


File: src/core/kinematics/Stub.cc:106
Error in Stub::from_four_points(): 

File: src/numeric/xyzVector.hh:654
Cannot create normalized xyzVector from vector of length() zero.  Error occurred when trying to normalize the vector between points A and B.  A=[918453717176598136965038080.000000,-3924033314059943978765123584.000000,-2268093534283480900808212480.000000], B=[918453717176598136965038080.000000,-3924033314059943978765123584.000000,-2268093534283480900808212480.000000].
 ------------------------ Begin developer's backtrace ------------------------- 
BACKTRACE:
0   rosetta_beta_6.06_x86_64-apple-darw 0x00000001107a5ec7 backtrace_string(int) + 87
1   rosetta_beta_6.06_x86_64-apple-darw 0x00000001107b9a1d utility::excn::Exception::Exception(char const*, int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) + 205
2   rosetta_beta_6.06_x86_64-apple-darw 0x0000000110396037 core::kinematics::Stub::from_four_points(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&) + 2071
3   rosetta_beta_6.06_x86_64-apple-darw 0x000000010fce58cf core::scoring::lkball::LKB_ResidueInfo::build_waters(core::conformation::Residue const&, bool) + 895
4   rosetta_beta_6.06_x86_64-apple-darw 0x000000010fce51ae core::scoring::lkball::LKB_ResidueInfo::LKB_ResidueInfo(core::conformation::Residue const&, bool) + 270
5   rosetta_beta_6.06_x86_64-apple-darw 0x000000010d397b53 std::__1::shared_ptr<core::scoring::lkball::LKB_ResidueInfo> std::__1::shared_ptr<core::scoring::lkball::LKB_ResidueInfo>::make_shared<core::conformation::Residue const&>(core::conformation::Residue const&) + 83
6   rosetta_beta_6.06_x86_64-apple-darw 0x000000010d3867c9 protocols::ligand_docking::ga_ligand_dock::GridScorer::score(core::pose::Pose&, protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, bool) + 777
7   rosetta_beta_6.06_x86_64-apple-darw 0x000000010eb9a642 core::optimization::ArmijoLineMinimization::Armijo(double, core::optimization::func_1d&) + 130
8   rosetta_beta_6.06_x86_64-apple-darw 0x000000010eb9a35e core::optimization::ArmijoLineMinimization::operator()(utility::vector1<double, std::__1::allocator<double> >&, utility::vector1<double, std::__1::allocator<double> >&) + 494
9   rosetta_beta_6.06_x86_64-apple-darw 0x000000010eba30b9 core::optimization::Minimizer::lbfgs(utility::vector1<double, std::__1::allocator<double> >&, double&, core::optimization::ConvergenceTest&, std::__1::shared_ptr<core::optimization::LineMinimizationAlgorithm>, int, bool) const + 3177
10  rosetta_beta_6.06_x86_64-apple-darw 0x000000010eb9e02f core::optimization::Minimizer::run(utility::vector1<double, std::__1::allocator<double> >&) + 6975
11  rosetta_beta_6.06_x86_64-apple-darw 0x000000010d39552c protocols::ligand_docking::ga_ligand_dock::GridScorer::minimizer_loop(protocols::ligand_docking::ga_ligand_dock::LigandConformer&, core::optimization::MinimizerOptions const&) + 1884
12  rosetta_beta_6.06_x86_64-apple-darw 0x000000010d392770 protocols::ligand_docking::ga_ligand_dock::GridScorer::optimize(protocols::ligand_docking::ga_ligand_dock::LigandConformer&, utility::vector1<double, std::__1::allocator<double> >, utility::vector1<utility::vector1<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer> >, std::__1::allocator<utility::vector1<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::PlaceableRotamer> > > >&, protocols::ligand_docking::ga_ligand_dock::RotamerPairEnergies&) + 752
13  rosetta_beta_6.06_x86_64-apple-darw 0x000000010d39f4b4 protocols::ligand_docking::ga_ligand_dock::GAOptimizer::optimize_generation(utility::vector1<protocols::ligand_docking::ga_ligand_dock::LigandConformer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::LigandConformer> >&, utility::vector1<double, std::__1::allocator<double> > const&) + 356
14  rosetta_beta_6.06_x86_64-apple-darw 0x000000010d398e52 protocols::ligand_docking::ga_ligand_dock::GAOptimizer::run(utility::vector1<protocols::ligand_docking::ga_ligand_dock::LigandConformer, std::__1::allocator<protocols::ligand_docking::ga_ligand_dock::LigandConformer> >&) + 2850
15  rosetta_beta_6.06_x86_64-apple-darw 0x000000010d3bd47b protocols::ligand_docking::ga_ligand_dock::GALigandDock::run_docking(protocols::ligand_docking::ga_ligand_dock::LigandConformer const&, std::__1::shared_ptr<protocols::ligand_docking::ga_ligand_dock::GridScorer>, protocols::ligand_docking::ga_ligand_dock::LigandAligner&, protocols::ligand_docking::ga_ligand_dock::OutputStructureStore&) + 715
16  rosetta_beta_6.06_x86_64-apple-darw 0x000000010d3b332e protocols::ligand_docking::ga_ligand_dock::GALigandDock::apply(core::pose::Pose&) + 14846
17  rosetta_beta_6.06_x86_64-apple-darw 0x000000010e9a4fd8 protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&) + 1224
18  rosetta_beta_6.06_x86_64-apple-darw 0x000000010e99d62f protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&) + 1935
19  rosetta_beta_6.06_x86_64-apple-darw 0x000000010e88a22c protocols::jd2::JobDistributor::run_one_job(std::__1::shared_ptr<protocols::moves::Mover>&, long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, unsigned long&, unsigned long&, bool) + 8204
20  rosetta_beta_6.06_x86_64-apple-darw 0x000000010e887572 protocols::jd2::JobDistributor::go_main(std::__1::shared_ptr<protocols::moves::Mover>) + 194
21  rosetta_beta_6.06_x86_64-apple-darw 0x000000010e882612 protocols::jd2::FileSystemJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 66
22  rosetta_beta_6.06_x86_64-apple-darw 0x000000010e8780e6 protocols::jd2::BOINCJobDistributor::go(std::__1::shared_ptr<protocols::moves::Mover>) + 246
23  rosetta_beta_6.06_x86_64-apple-darw 0x000000010bdc6254 main + 22020
24  dyld                                0x000000011d82c52e start + 462
 ------------------------- End developer's backtrace -------------------------- 
======================================================
DONE ::     5 starting structures    28235 cpu seconds
This process generated      5 decoys from       5 attempts
======================================================
BOINC :: WS_max 2.68527e+09

BOINC :: Watchdog shutting down...
22:14:19 (10973): called boinc_finish(0)

</stderr_txt>
]]>