Task 1584203692

Stderr output

<core_client_version>7.4.36</core_client_version>
<![CDATA[
<message>
One or more arguments are invalid
 (0x80000003) - exit code -2147483645 (0x80000003)
</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_windows_x86_64.exe @SETDB1_6BHE_fulldb_ucyRgD_5_7687.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_f5ae1de8e1\database
Starting watchdog...
Watchdog active.

[ ERROR ]: Caught exception:


File: src/protocols/rosetta_scripts/RosettaScriptsParser.cc:1208
Input rosetta scripts XML file "input_SETDB1_6BHE_fulldb_ucyRgD_5_7687/dock.xml" failed to validate against the rosetta scripts schema. Use the option -parser::output_schema <output filename> to output the schema to a file to see all valid options.
Your XML has failed validation.  The error message below will tell you where in your XML file the error occurred.  Here's how to fix it:

1) If the validation fails on something obvious, like an illegal attribute due to a spelling error (perhaps you used scorefnction instead of scorefunction), then you need to fix your XML file.
2) If you haven't run the XML rewriter script and this might be pre-2017 Rosetta XML, run the rewriter script (tools/xsd_xrw/rewrite_rosetta_script.py) on your input XML first.  The attribute values not being in quotes (scorefunction=talaris2014 instead of scorefunction="talaris2014") is a good indicator that this is your problem.
3) If you are a developer and neither 1 nor 2 worked - email the developer's mailing list or try Slack.
4) If you are an academic or commercial user - try the Rosetta Forums https://www.rosettacommons.org/forum




File: src/protocols/rosetta_scripts/RosettaScriptsSchemaValidator.cc:89
If you are seeing this message, the internally-generated XML Schema for rosetta_scripts could not be properly generated
This failure occurred before your XML script that provided was examined. The error has been compiled into Rosetta and will need to be fixed by a developer.Global schema validation error:  read the error message(s) below and fix your schema in the C++ code.

Errors: Error: expected '>'

3368:  </xs:attribute>
3369:  <xs:attribute name="logic" type="logic_types" default="and_logic">
3370:   <xs:annotation><xs:documentation xml:lang="en">
3371:    The logic to use for mutliple properties.  Default is OR logic. Current choices are: 
3372:  [and_logic, or_logic]
3373:    </xs:documentation
Error: Premature end of data in tag annotation line 3370

3368:  </xs:attribute>
3369:  <xs:attribute name="logic" type="logic_types" default="and_logic">
3370:   <xs:annotation><xs:documentation xml:lang="en">
3371:    The logic to use for mutliple properties.  Default is OR logic. Current choices are: 
3372:  [and_logic, or_logic]
3373:    </xs:documentation
Error: Premature end of data in tag attribute line 3369

3368:  </xs:attribute>
3369:  <xs:attribute name="logic" type="logic_types" default="and_logic">
3370:   <xs:annotation><xs:documentation xml:lang="en">
3371:    The logic to use for mutliple properties.  Default is OR logic. Current choices are: 
3372:  [and_logic, or_logic]
3373:    </xs:documentation
Error: Premature end of data in tag complexType line 3358

3368:  </xs:attribute>
3369:  <xs:attribute name="logic" type="logic_types" default="and_logic">
3370:   <xs:annotation><xs:documentation xml:lang="en">
3371:    The logic to use for mutliple properties.  Default is OR logic. Current choices are: 
3372:  [and_logic, or_logic]
3373:    </xs:documentation
Error: Premature end of data in tag schema line 2

3368:  </xs:attribute>
3369:  <xs:attribute name="logic" type="logic_types" default="and_logic">
3370:   <xs:annotation><xs:documentation xml:lang="en">
3371:    The logic to use for mutliple properties.  Default is OR logic. Current choices are: 
3372:  [and_logic, or_logic]
3373:    </xs:documentation

Warnings: 


 ------------------------ Begin developer's backtrace ------------------------- 
BACKTRACE:
 ------------------------- End developer's backtrace -------------------------- 


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Breakpoint Encountered (0x80000003) at address 0x00007FFD7ADE0B52

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 7.9.0


Dump Timestamp    : 10/02/24 10:09:58
Install Directory : D:\Program Files\BOINC\
Data Directory    : D:\ProgramData\BOINC
Project Symstore  : https://boinc.bakerlab.org/rosetta/symstore
LoadLibraryA( D:\ProgramData\BOINC\dbghelp.dll ): GetLastError = 126
Loaded Library    : dbghelp.dll
LoadLibraryA( D:\ProgramData\BOINC\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( D:\ProgramData\BOINC\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( D:\ProgramData\BOINC\version.dll ): GetLastError = 126
LoadLibraryA( version.dll ): GetLastError = 1455
SymInitialize(): GetLastError = 3221225725
*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 4289, Write: 221, Other 14500

- I/O Transfers Counters -
Read: 7570753, Write: 607653, Other 156900

- Paged Pool Usage -
QuotaPagedPoolUsage: 9512, QuotaPeakPagedPoolUsage: 367056
QuotaNonPagedPoolUsage: 97361920, QuotaPeakNonPagedPoolUsage: 9376

- Virtual Memory Usage -
VirtualSize: 36735, PeakVirtualSize: 327745536

- Pagefile Usage -
PagefileUsage: 97894400, PeakPagefileUsage: 97361920

- Working Set Size -
WorkingSetSize: 367192, PeakWorkingSetSize: 138186752, PageFaultCount: 138190848

*** Dump of thread ID 4836 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 40625000.000000, User Time: 58281248.000000, Wait Time: 129852.000000

- Unhandled Exception Record -
Reason: Breakpoint Encountered (0x80000003) at address 0x00007FFD7ADE0B52


*** Dump of thread ID 9112 (state: Waiting): ***

- Information -
Status: Wait Reason: EventPairLow, , Kernel Time: 156250.000000, User Time: 0.000000, Wait Time: 128319.000000


*** Dump of thread ID 8672 (state: Waiting): ***

- Information -
Status: Wait Reason: EventPairLow, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 128319.000000


*** Dump of thread ID 8600 (state: Waiting): ***

- Information -
Status: Wait Reason: EventPairLow, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 128323.000000


*** Dump of thread ID 10176 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 129851.000000


*** Dump of thread ID 16108 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 129726.000000



*** Debug Message Dump ****


*** Foreground Window Data ***
    Window Name      : 
    Window Class     : 
    Window Process ID: 0
    Window Thread ID : 0

Exiting...

</stderr_txt>
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