Task 1584089912

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_windows_x86_64.exe @SETDB1_6BHE_fulldb_ucyRgD_7_2522.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_f5ae1de8e1\database
Starting watchdog...
Watchdog active.

[ ERROR ]: Caught exception:


File: src/protocols/rosetta_scripts/RosettaScriptsParser.cc:1208
Input rosetta scripts XML file "input_SETDB1_6BHE_fulldb_ucyRgD_7_2522/dock.xml" failed to validate against the rosetta scripts schema. Use the option -parser::output_schema <output filename> to output the schema to a file to see all valid options.
Your XML has failed validation.  The error message below will tell you where in your XML file the error occurred.  Here's how to fix it:

1) If the validation fails on something obvious, like an illegal attribute due to a spelling error (perhaps you used scorefnction instead of scorefunction), then you need to fix your XML file.
2) If you haven't run the XML rewriter script and this might be pre-2017 Rosetta XML, run the rewriter script (tools/xsd_xrw/rewrite_rosetta_script.py) on your input XML first.  The attribute values not being in quotes (scorefunction=talaris2014 instead of scorefunction="talaris2014") is a good indicator that this is your problem.
3) If you are a developer and neither 1 nor 2 worked - email the developer's mailing list or try Slack.
4) If you are an academic or commercial user - try the Rosetta Forums https://www.rosettacommons.org/forum




File: src/protocols/rosetta_scripts/RosettaScriptsSchemaValidator.cc:89
If you are seeing this message, the internally-generated XML Schema for rosetta_scripts could not be properly generated
This failure occurred before your XML script that provided was examined. The error has been compiled into Rosetta and will need to be fixed by a developer.Global schema validation error:  read the error message(s) below and fix your schema in the C++ code.

Errors: Your XML Schema failed to self-validate.  This is essentially a compile-time error, but it cannot be exposed until runtime.  You've edited some class&#226;&#128;&#153;s provide_XML_schema function recently in such a way that it is now providing an invalid or incomplete schema.  The most likely problem is that you put <, >, or & in an attribute's description.  Email the devel list if the error message below does not help you locate and fix the problem.
Error: Memory allocation failed : compiling regexp

From line 33512:
Error: complex type 'mover_MultipleOutputWrapper_type': Failed to compile the content model.

33507:    The name given to this instance.
33508:    </xs:documentation></xs:annotation>
33509:  </xs:attribute>
33510: </xs:complexType>
33511: 
33512: <xs:complexType name="mover_MultipleOutputWrapper_type" mixed="true">
33513:  <xs:annotation><xs:documentation xml:lang="en">
33514:   XRW TO DO
33515:  </xs:documentation></xs:annotation>
33516:  <xs:choice>
33517:   <xs:element name="ROSETTASCRIPTS" type="rosetta_scripts_parser_ROSETTASCRIPTS_type"/>

Warnings: 


 ------------------------ Begin developer's backtrace ------------------------- 
BACKTRACE:
 ------------------------- End developer's backtrace -------------------------- 
DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.)

ERROR: Function not implemented.
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 101
06:51:26 (19516): called boinc_finish(0)

</stderr_txt>
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