Task 1584009653
| Name | RosettaVS_SAVE_ALL_OUT_NOJRAN_SETDB1_6BHE_fulldb_IGNORE_THE_REST_ucyRgD_3_1397_2980828_1_0 |
| Workunit | 1409352362 |
| Created | 1 Oct 2024, 12:35:31 UTC |
| Sent | 1 Oct 2024, 13:07:30 UTC |
| Report deadline | 4 Oct 2024, 13:07:30 UTC |
| Received | 2 Oct 2024, 22:00:08 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 6267710 |
| Run time | 7 hours 57 min 34 sec |
| CPU time | 5 hours 1 min 48 sec |
| Validate state | Valid |
| Credit | 10.47 |
| Device peak FLOPS | 6.39 GFLOPS |
| Application version | Rosetta Beta v6.06 windows_x86_64 |
| Peak working set size | 1,677.98 MB |
| Peak swap size | 1,652.75 MB |
| Peak disk usage | 0.60 MB |
Stderr output
<core_client_version>7.16.11</core_client_version> <![CDATA[ <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_windows_x86_64.exe @SETDB1_6BHE_fulldb_ucyRgD_3_1397.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 Using database: database_f5ae1de8e1\database Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. Starting watchdog... Watchdog active. [ ERROR ]: Caught exception: File: src/protocols/rosetta_scripts/RosettaScriptsParser.cc:1208 Input rosetta scripts XML file "input_SETDB1_6BHE_fulldb_ucyRgD_3_1397/dock.xml" failed to validate against the rosetta scripts schema. Use the option -parser::output_schema <output filename> to output the schema to a file to see all valid options. Your XML has failed validation. The error message below will tell you where in your XML file the error occurred. Here's how to fix it: 1) If the validation fails on something obvious, like an illegal attribute due to a spelling error (perhaps you used scorefnction instead of scorefunction), then you need to fix your XML file. 2) If you haven't run the XML rewriter script and this might be pre-2017 Rosetta XML, run the rewriter script (tools/xsd_xrw/rewrite_rosetta_script.py) on your input XML first. The attribute values not being in quotes (scorefunction=talaris2014 instead of scorefunction="talaris2014") is a good indicator that this is your problem. 3) If you are a developer and neither 1 nor 2 worked - email the developer's mailing list or try Slack. 4) If you are an academic or commercial user - try the Rosetta Forums https://www.rosettacommons.org/forum File: src/protocols/rosetta_scripts/RosettaScriptsSchemaValidator.cc:71 If you are seeing this message, the internally-generated XML Schema for rosetta_scripts could not be properly generated This failure occurred before your XML script that provided was examined. The error has been compiled into Rosetta and will need to be fixed by a developer.An error was encountered while the string of the schema was being generated; this is before the schema is analyzed for whether it is correct or not. File: src/protocols/moves/MoverFactory.cc:181 Could not generate an XML Schema for Movers from MoverFactory; offending class must call protocols::moves::complex_type_name_for_mover when defining its XML Schema File: src/utility/tag/xml_schema_group_initialization.hh:78 define_xml_schema_group: failed to define an xml schema for "GeneralizedKIC"; message was: File: src/utility/tag/Tag.cc:760 Tag::read - parse error, printing backtrace. Tag::read - parse error - file:istream line:1 column:1 - <xs:simpleType name="non_negative_integer"> Tag::read - parse error - file:istream line:1 column:1 - ^ ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- ====================================================== DONE :: 1 starting structures 18108.5 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 BOINC :: Watchdog shutting down... 17:02:29 (17700): called boinc_finish(0) </stderr_txt> ]]>
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