Task 1583963138

Name RosettaVS_SAVE_ALL_OUT_NOJRAN_SETDB1_6BHE_fulldb_IGNORE_THE_REST_ucyRgD_2_2391_2980827_1_1
Workunit 1409303254
Created 1 Oct 2024, 8:02:37 UTC
Sent 1 Oct 2024, 8:14:11 UTC
Report deadline 4 Oct 2024, 8:14:11 UTC
Received 1 Oct 2024, 8:35:06 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 1 (0x00000001) Unknown error code
Computer ID 6281899
Run time 3 min 22 sec
CPU time 23 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4.59 GFLOPS
Application version Rosetta Beta v6.06
windows_x86_64
Peak working set size 44.39 MB
Peak swap size 16.72 MB
Peak disk usage 0.01 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
Funci�n incorrecta.
 (0x1) - exit code 1 (0x1)</message>
<stderr_txt>
oring/score_functions/MembranePotential/ELazaridis_cen_polynom_table.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/MembranePotential/AsymEZ_CG_Derivs.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/MembranePotential/CEN10_Menv_smooth_log.txt
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error:  cannot create ./database/scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt
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error:  cannot create ./database/scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/MembranePotential/AsymEZ_CB.txt
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/refresh_iedb_database.sh
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/iedb_data.db
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/Distribution of IEDB-derived data with Rosetta.pdf
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/Distribution of Propred matrices with Rosetta.pdf
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/iedb_data.info
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/iedb_data.mhc
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/propred8_5.mhc
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error:  cannot create ./database/scoring/score_functions/mhc_epitope/propred8.txt
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error:  cannot create ./database/scoring/score_functions/SecondaryStructurePotential/rsigma_dot.txt
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error:  cannot create ./database/scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth
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error:  cannot create ./database/scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth
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error:  cannot create ./database/scoring/score_functions/NV/neighbor_vector_score.histogram
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error:  cannot create ./database/scoring/score_functions/saxs/ASP__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/GLU__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/ff-rosetta-cen.cfg
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error:  cannot create ./database/scoring/score_functions/saxs/LEU__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/always_one.ff
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error:  cannot create ./database/scoring/score_functions/saxs/CYS__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/H.ff
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error:  cannot create ./database/scoring/score_functions/saxs/HIS__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/LYS__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/MET__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/VAL__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/O.ff
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error:  cannot create ./database/scoring/score_functions/saxs/PRO__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/SER__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/PHE__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/ILE__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/N.ff
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error:  cannot create ./database/scoring/score_functions/saxs/GLN__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/ff-rosetta-fa.cfg
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error:  cannot create ./database/scoring/score_functions/saxs/ASN__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/TRP__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/ff-rosetta.cfg
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error:  cannot create ./database/scoring/score_functions/saxs/ARG__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/THR__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/TYR__CEN.ff
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error:  cannot create ./database/scoring/score_functions/saxs/C.ff
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error:  cannot create ./database/scoring/score_functions/generic_potential/generic_bonded.aamerge.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/generic_potential/generic_bonded.round6p.txt
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error:  cannot create ./database/scoring/score_functions/generic_potential/torsion_distribution.round6p.gz.v1.txt
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error:  cannot create ./database/scoring/score_functions/PairEPotential/pdb_pair_stats_fine
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error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_talaris2013_boltz
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error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_mm_std_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_talaris2013_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_talaris2013_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_talaris2013_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_mm_std_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_mm_std_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_mm_std_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_mm_std_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_talaris2013_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_mm_std_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_talaris2013_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_talaris2013_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_mm_std_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_talaris2013_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_mm_std_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/pdb_database_talaris2013_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/split_unfolded_one_body_talaris2013
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_talaris2013_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_mm_std_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_talaris2013_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_talaris2013_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/pdb_database_talaris2013_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_mm_std_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_mm_std_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/unique_database_talaris2013_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_mm_std_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_talaris2013_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_mm_std_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_talaris2013_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/rosetta_database_mm_std_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/split_unfolded_one_body_mm_std
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/ele_database_mm_std_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_mm_std_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/pdb_database_talaris2013_mode
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/split_unfolded_two_body_default
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_talaris2013_median
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/mm_database_talaris2013_boltz
        Permission denied
error:  cannot create ./database/scoring/score_functions/split_unfolded/pdb_database_talaris2013_mean
        Permission denied
error:  cannot create ./database/scoring/score_functions/lipid_orientation/chol_o_mem_z_smooth_energies.dat
        Permission denied
error:  cannot create ./database/scoring/score_functions/lipid_orientation/chol_com_mem_z_smooth_energies.dat
        Permission denied
error:  cannot create ./database/scoring/score_functions/lipid_orientation/chol_c25_mem_z_smooth_energies.dat
        Permission denied
error:  cannot create ./database/scoring/score_functions/netcharge/net_zero.charge
        Permission denied
error:  cannot create ./database/scoring/score_functions/netcharge/negative_one.charge
        Permission denied
error:  cannot create ./database/scoring/score_functions/omega/notes_on_data.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/omega/omega_ppdep.all.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/omega/omega_ppdep.prepro.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/omega/omega_ppdep.valile.txt
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error:  cannot create ./database/scoring/score_functions/omega/omega_ppdep.pro.txt
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error:  cannot create ./database/scoring/score_functions/omega/omega_ppdep.gly.txt
        Permission denied
error:  cannot create ./database/scoring/score_functions/unfolded/unfolded_state_residue_energies_mm_std
        Permission denied
error:  cannot create ./database/scoring/score_functions/unfolded/unfolded_state_residue_energies_score12
        Permission denied
error:  cannot create ./database/scoring/score_functions/unfolded/unfolded_state_residue_energies_rna
        Permission denied
error:  cannot create ./database/scoring/score_functions/elec_group_def.dat
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/params.db3
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/OLF_params_4/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/extended_BAH_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/helix_hb_06_2009/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/correct_no_lr_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/BBasSC_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newOH_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/His_Phil_fix/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/newCHI_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBEval.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBPoly1D.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBondWeightType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/experimental_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HBSeqSep.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HybridizationType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HBAccHybridization.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/schema.sql
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HBAccChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HBDonChemType.csv
        Permission denied
error:  cannot create ./database/scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv
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error:  cannot create ./database/scoring/score_functions/disulfides/centroid_distance_score
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error:  cannot create ./database/scoring/score_functions/custom_pair_distance/fa_custom_pair_distance
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error:  cannot create ./database/scoring/score_functions/pointwater/norm_trunc6/E_ASN_2HD2_ND2.dat
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error:  cannot create ./database/scoring/score_functions/aa_composition/sample_composition.comp
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error:  cannot create ./database/scoring/score_functions/aa_repeat_energy/default_repeat_penalty_table.rpt_pen
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error:  cannot create ./database/scoring/score_functions/SurfacePotential/hpatch_score.txt
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error:  cannot create ./database/scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt
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error:  cannot create ./database/scoring/sasa_scores/sasapack_datafile_v1.txt
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error:  cannot create ./database/scoring/sasa_scores/avge_datafile_score12prime_v1.txt
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error:  cannot create ./database/scoring/qsar/lj_table.txt
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error:  cannot create ./database/scoring/ProQ/ProQM_model.1.linear
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error:  cannot create ./database/scoring/AtomVDW/atom_vdw.txt
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error:  cannot create ./database/scoring/dna/bound_dna_dihedrals.txt
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warning:  set times/attribs failed for ./database/virtual_enzymes/kinases/h_sapiens/
warning:  set times/attribs failed for ./database/virtual_enzymes/kinases/
warning:  set times/attribs failed for ./database/virtual_enzymes/glycosyltransferases/h_sapiens/
warning:  set times/attribs failed for ./database/virtual_enzymes/glycosyltransferases/c_jejuni/
warning:  set times/attribs failed for ./database/virtual_enzymes/glycosyltransferases/
warning:  set times/attribs failed for ./database/virtual_enzymes/N-terminal_acetyltransferases/s_solfataricus/
warning:  set times/attribs failed for ./database/virtual_enzymes/N-terminal_acetyltransferases/h_sapiens/
warning:  set times/attribs failed for ./database/virtual_enzymes/N-terminal_acetyltransferases/
warning:  set times/attribs failed for ./database/virtual_enzymes/DNA_methyltransferases/h_sapiens/
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warning:  set times/attribs failed for ./database/virtual_enzymes/
warning:  set times/attribs failed for ./database/utilities/
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warning:  set times/attribs failed for ./database/sequence/mhc_rank_svm_scores/
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warning:  set times/attribs failed for ./database/scoring/score_functions/rama/shapovalov/
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warning:  set times/attribs failed for ./database/scoring/score_functions/rama/alpha_ncaa/
warning:  set times/attribs failed for ./database/scoring/score_functions/rama/
warning:  set times/attribs failed for ./database/scoring/score_functions/pointwater/norm_trunc6/
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warning:  set times/attribs failed for ./database/scoring/score_functions/mhc_epitope/
warning:  set times/attribs failed for ./database/scoring/score_functions/lipid_orientation/
warning:  set times/attribs failed for ./database/scoring/score_functions/hbonds/sp2_params/
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warning:  set times/attribs failed for ./database/scoring/score_functions/hbonds/score12_params/
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Using database: database\
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warning:  set times/attribs failed for ./input_SETDB1_6BHE_fulldb_ucyRgD_2_2391/target/
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Starting watchdog...
Watchdog active.

ERROR: Unable to open file: database\chemical/residue_type_sets/fa_standard/residue_types.txt

ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 147
BOINC:: Error reading and gzipping output datafile: default.out
10:33:18 (18332): called boinc_finish(1)

</stderr_txt>
]]>




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