Task 1577750698

Name	RosettaVS_SAVE_ALL_OUT_NOJRAN_ctps_boinc_fulldb_IGNORE_THE_REST_yPIxHW_5_2006_2978449_2_0
Workunit	1404098052
Created	28 Jun 2024, 5:54:11 UTC
Sent	28 Jun 2024, 6:34:02 UTC
Report deadline	1 Jul 2024, 6:34:02 UTC
Received	28 Jun 2024, 8:01:30 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	2275164
Run time	25 sec
CPU time	5 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	4.45 GFLOPS
Application version	Rosetta Beta v6.04 windows_x86_64
Peak working set size	53.74 MB
Peak swap size	12.50 MB
Peak disk usage	0.01 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.04_windows_x86_64.exe @ctps_boinc_fulldb_yPIxHW_5_2006.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_0f7f01a1b07\database
Starting watchdog...
Watchdog active.

[ ERROR ]: Caught exception:


File: src/protocols/rosetta_scripts/RosettaScriptsParser.cc:1208
Input rosetta scripts XML file "input_ctps_boinc_fulldb_yPIxHW_5_2006/dock.xml" failed to validate against the rosetta scripts schema. Use the option -parser::output_schema <output filename> to output the schema to a file to see all valid options.
Your XML has failed validation.  The error message below will tell you where in your XML file the error occurred.  Here's how to fix it:

1) If the validation fails on something obvious, like an illegal attribute due to a spelling error (perhaps you used scorefnction instead of scorefunction), then you need to fix your XML file.
2) If you haven't run the XML rewriter script and this might be pre-2017 Rosetta XML, run the rewriter script (tools/xsd_xrw/rewrite_rosetta_script.py) on your input XML first.  The attribute values not being in quotes (scorefunction=talaris2014 instead of scorefunction="talaris2014") is a good indicator that this is your problem.
3) If you are a developer and neither 1 nor 2 worked - email the developer's mailing list or try Slack.
4) If you are an academic or commercial user - try the Rosetta Forums https://www.rosettacommons.org/forum




File: src/protocols/rosetta_scripts/RosettaScriptsSchemaValidator.cc:89
If you are seeing this message, the internally-generated XML Schema for rosetta_scripts could not be properly generated
This failure occurred before your XML script that provided was examined. The error has been compiled into Rosetta and will need to be fixed by a developer.Global schema validation error:  read the error message(s) below and fix your schema in the C++ code.

Errors: Error: Memory allocation failed : xmlSAX2Characters

45450:     <xs:attribute name="z1" type="real" default="0.000000">
45451:      <xs:annotation><xs:documentation xml:lang="en">
45452:       Minor helix rise per residue along the helix axis, in Angstroms.  Read from Crick params file, and not normally set by hand, sampled, or perturbed.
45453:       </xs:documentation></xs:annotation>
45454:     </xs:attribute>
45455:     <xs:attribute name="z1_perturbation" type="real" default="0.0">
45456:      <xs:annotation><xs:documentation xml:lang="en">
45457:       Perturbation magnitude for perturbing z1.
45458:       </xs:documentation></xs:annotation>
45459:     </xs:attribute>
45460:     <xs:attribute name="z1_perturbation_type" type="xs:string" default="gaussian">
Error: Extra content at the end of the document

45450:     <xs:attribute name="z1" type="real" default="0.000000">
45451:      <xs:annotation><xs:documentation xml:lang="en">
45452:       Minor helix rise per residue along the helix axis, in Angstroms.  Read from Crick params file, and not normally set by hand, sampled, or perturbed.
45453:       </xs:documentation></xs:annotation>
45454:     </xs:attribute>
45455:     <xs:attribute name="z1_perturbation" type="real" default="0.0">
45456:      <xs:annotation><xs:documentation xml:lang="en">
45457:       Perturbation magnitude for perturbing z1.
45458:       </xs:documentation></xs:annotation>
45459:     </xs:attribute>
45460:     <xs:attribute name="z1_perturbation_type" type="xs:string" default="gaussian">

Warnings: 


 ------------------------ Begin developer's backtrace ------------------------- 
BACKTRACE:
 ------------------------- End developer's backtrace -------------------------- 
DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.)

ERROR: Function not implemented.
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 101
03:01:16 (10608): called boinc_finish(0)

</stderr_txt>
]]>