Posts by savthe

1) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61556) Posted 3 Jun 2009 by savthe Post: Ah, i see where you looking now. I didn't know about these logs. I'll try rosetta again later. If my first crunches for folding@home on 32 & 64-bit BSDs will fine, it'll just remove a big headache of setting up rosetta on freebsd =) Yep, i know about seti, simap, milkyway, einstein, but simap is always lacking work units and for the seti, i'm trying to participate to projects which can give useful results. Imo there is no practical sense in knowing if the green men exist, or not. I'm running rosetta and docking @home on windows machines and, if i'll be successfull, folding@home on freebsd. Thank you very much for your help.
2) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61546) Posted 2 Jun 2009 by savthe Post: never mind. Crunching for folding@home now. Linux client runs ok and its simplier than boinc_client.
3) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61536) Posted 2 Jun 2009 by savthe Post: by the way, is there a minirosetta source code? It would be easier to compile it on freebsd.
4) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61472) Posted 30 May 2009 by savthe Post: Still not successfull: 30-May-2009 16:20:02 [rosetta@home] Starting lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 30-May-2009 16:20:02 [rosetta@home] Starting task lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 using minirosetta version 171 30-May-2009 16:20:06 [rosetta@home] Computation for task lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 finished 30-May-2009 16:20:06 [rosetta@home] Output file lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1_0 for task lr5_D_chbond_05_run2_rlbn_1opd_SAVE_ALL_OUT_NATIVE_NOCON_12601_185_1 absent By some reason minirosetta doesn't run or just exits on start. Although i don't see any crash messages. <app_info> <app> <name>rosetta_beta</name> </app> <file_info> <name>rosetta_beta_5.98_i686-pc-linux-gnu</name> <executable/> </file_info> <app_version> <app_name>rosetta_beta</app_name> <version_num>598</version_num> <file_ref> <file_name>rosetta_beta_5.98_i686-pc-linux-gnu</file_name> <main_program/> </file_ref> </app_version> <app> <name>minirosetta</name> </app> <file_info> <name>minirosetta_1.71_i686-pc-linux-gnu</name> <executable/> </file_info> <app_version> <app_name>minirosetta</app_name> <version_num>171</version_num> <file_ref> <file_name>minirosetta_1.71_i686-pc-linux-gnu</file_name> <main_program/> </file_ref> </app_version> </app_info>
5) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61462) Posted 30 May 2009 by savthe Post: i mean that the client apps (rosetta & minirosetta) should be periodically updated, so the only way i see is to start boinc on linux and let it fetch these binaries. Or is there a direct link where up-to-date versions of rosetta and minirosetta are available? I have a problem on both (32 & 64 bits) FreeBSD machines with results reporting. boinc_client starts computation: "Starting task xxx" computates several hours "Computation for task xxx finished" "Output file xxx for task xxx absent" So it sends to server "client error" It seems it doesn't save something because if i close boinc_client and start again, it says "Restarting task" instead of "Resuming computation". I have the following file permittions set on folders: 777 on /var/db/boinc 777 on /var/db/boinc/projects 777 on /var/db/boinc/projects/boinc.bakerlab.org_rosetta file listing in /var/db/boinc/projects/boinc.bakerlab.org_rosetta -rw-r--r-- 1 root nobody 94581 26 май 09:18 1ffk.vall_torsions.gz -rw-r--r-- 1 root nobody 1667226 26 май 09:20 DunbrackBBDepRots12.dat.gz -rw-r--r-- 1 root nobody 356 26 май 09:20 Equil_AM.mean.dat.gz -rw-r--r-- 1 root nobody 322 26 май 09:20 Equil_AM.stddev.dat.gz -rw-r--r-- 1 root nobody 187 26 май 09:20 Equil_bp_AM.mean.dat.gz -rw-r--r-- 1 root nobody 169 26 май 09:20 Equil_bp_AM.stddev.dat.gz -rw-r--r-- 1 root nobody 1267 26 май 09:20 Fij_AM.dat.gz -rw-r--r-- 1 root nobody 383 26 май 09:20 Fij_bp_AM.dat.gz -rw-r--r-- 1 root nobody 165 26 май 09:21 Paa.gz -rw-r--r-- 1 root nobody 1832 26 май 09:21 Paa_n.gz -rw-r--r-- 1 root nobody 120642 26 май 09:21 Paa_pp.gz -rw-r--r-- 1 root nobody 425070 26 май 09:21 Rama_smooth_dyn.dat_ss_6.4.gz -rw-r--r-- 1 root nobody 1132 26 май 09:21 SASA-angles.dat.gz -rw-r--r-- 1 root nobody 68809 26 май 09:21 SASA-masks.dat.gz -rw-r--r-- 1 sav sav 658 25 май 23:22 app_info.xml -rw-r--r-- 1 root nobody 11994 26 май 09:18 avgE_from_pdb.gz -rw-r--r-- 1 root nobody 245 26 май 09:20 bb_hbW.gz -rw-r--r-- 1 root nobody 6665378 26 май 09:20 bbdep02.May.sortlib.gz -rw-r--r-- 1 root nobody 177854 26 май 09:20 disulf_jumps.dat.gz -rw-r--r-- 1 root nobody 4426838 26 май 11:46 homfragments2_1ig5.zip -rw-r--r-- 1 root nobody 5019045 26 май 11:50 homfragments2_1r69.zip -rw-r--r-- 1 root nobody 689 26 май 09:20 jump_templates.dat.gz -rw-r--r-- 1 root nobody 66968 26 май 09:21 jump_templates_RNA_basepairs.dat.gz -rw-r--r-- 1 root nobody 85353 26 май 09:21 jump_templates_RNA_basepairs_v2.dat.gz -rw-r--r-- 1 root nobody 516693 26 май 09:21 jump_templates_v2.dat.gz -r-xr-xr-x 1 sav sav 3106864 25 май 20:55 minirosetta_1.28_i686-pc-linux-gnu -rw-r--r-- 1 root nobody 2515 26 май 09:21 paircutoffs.gz -rw-r--r-- 1 root nobody 71365 26 май 09:21 pdbpairstats_fine.gz -rw-r--r-- 1 root nobody 19510 26 май 09:21 phi.theta.36.HS.resmooth.gz -rw-r--r-- 1 root nobody 11863 26 май 09:21 phi.theta.36.SS.resmooth.gz -rw-r--r-- 1 root nobody 136751 26 май 09:21 plane_data_table_1015.dat.gz -rw-r--r-- 1 root nobody 33761 26 май 09:21 rna_base_pair_rho_omega1_omega2.dat.gz -rw-r--r-- 1 root nobody 12388 26 май 09:21 rna_base_pair_xy.dat.gz -rw-r--r-- 1 root nobody 21119 26 май 09:21 rna_nonbasebase_xy.dat.gz -rw-r--r-- 1 root nobody 125 26 май 09:21 rna_o2star_score.dat.gz -rw-r--r-- 1 root nobody 5216 26 май 09:21 rna_vdw_parameter.dat.gz -r-xr-xr-x 1 sav sav 4974360 25 май 23:33 rosetta_beta_5.98_i686-pc-linux-gnu -rw-r--r-- 1 root nobody 2475 26 май 09:21 sasa_offsets.txt.gz -rw-r--r-- 1 root nobody 34833 26 май 09:21 sasa_prob_cdf.txt.gz -rw-r--r-- 1 root nobody 2998 26 май 09:21 sc_hbW.gz i'm running boinc_client as root.
6) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61375) Posted 26 May 2009 by savthe Post: lol. I should have tried before asking. Surprisingly rosetta ran just the same way as it did on my i386 machine. But there should be a way to obtain fresh binaries.
7) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61365) Posted 25 May 2009 by savthe Post: It works!!! =)) Thank you very much, Dotsch. Btw, where can i get linux binaries to try rosetta on freebsd for amd64?
8) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61363) Posted 25 May 2009 by savthe Post: Hi! Are there any updates on this topic? I'd like to run rosetta on two FreeBSD 7.X hosts (i386 and amd64). Yes. I have tested the FreeBSD Linux Compat successfully and written a howto : http://www.dotsch.de/boinc/BSD_Linux-Compat_howto.html The instructions are for older rosetta/minirosetta versions. So you need to update the app_info.xml... Where do i get recent app_info.xml for rosetta (or what should i change in it)?
9) Questions and Answers : Unix/Linux : Anyone working on a FreeBSD port for Rosetta? (Message 61352) Posted 24 May 2009 by savthe Post: Hi! Are there any updates on this topic? I'd like to run rosetta on two FreeBSD 7.X hosts (i386 and amd64).