1)
Message boards :
Number crunching :
Minirosetta 3.52
(Message 77432)
Posted 30 Aug 2014 by [AF>france>pas-de-calais]symaski62 Post: I am hoping to receive more of the "25 Hour" wu's and not those at 45-50 hours. The latter ones result in errors for me. 0 to 100% = (24 hour) minirosetta, (25 Hour) boinc |
2)
Message boards :
Rosetta@home Science :
design of protein inhibitors to target diseases
(Message 77394)
Posted 23 Aug 2014 by [AF>france>pas-de-calais]symaski62 Post: http://en.wikipedia.org/wiki/ZMapp :) |
3)
Message boards :
Rosetta@home Science :
Rosetta@home Research Updates
(Message 77350)
Posted 16 Aug 2014 by [AF>france>pas-de-calais]symaski62 Post: http://www.ipd.uw.edu/wordpress/wp-content/uploads/2014/08/IPD_Update_WEB_8_14_14.pdf 3 pages Standing on these successes, we recently integrated streamlined protein design methods for the de novo preparation of hyper-stable mini-protein scaffolds (30-40 amino acids) using high throughput gene synthesis and massively parallel screening methods which enable manufacturing and testing of tens of thousands of new proteins in a matter of weeks. With funding support from the Defense Threat Reduction Agency (DTRA), we recently launched a “War on Ebola” to test these new capabilities by designing medical countermeasures (MCMs) that could address the recurring hemorrhagic fever outbreaks in Africa. what David Baker ? "war on Ebola" |
4)
Message boards :
Number crunching :
Really small WU?
(Message 73521)
Posted 23 Jul 2012 by [AF>france>pas-de-calais]symaski62 Post: "Tc680" error :) sorry |
5)
Message boards :
Number crunching :
Rosetta@Home version 3.31
(Message 73518)
Posted 22 Jul 2012 by [AF>france>pas-de-calais]symaski62 Post: http://boinc.bakerlab.org/rosetta/result.php?resultid=521080073 Tc680_fold_and_dock_d2_frank_intra_inter_cst_wt_4.0_52292_394_0 # cpu_run_time_pref: 86400 ====================================================== DONE :: 1 starting structures 55103.1 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 hier, je regarde image :) => ne pas 2 de plus (starting structures) erreur :) |
6)
Message boards :
Number crunching :
Rosetta@Home version 3.31
(Message 73382)
Posted 7 Jul 2012 by [AF>france>pas-de-calais]symaski62 Post: problem ^^ http://boinc.bakerlab.org/rosetta/results.php?userid=506&offset=0 Tag::read - parse error, printing backtrace. Tag::read - parse error - file:istream line:3 column:1 - </TASKOPERATIONS> Tag::read - parse error - file:istream line:3 column:1 - ^ Tag::read - parse error - file:istream line:7 column:1 - </stage1> Tag::read - parse error - file:istream line:7 column:1 - ^ Tag::read - parse error - file:istream line:10 column:1 - </stage2> Tag::read - parse error - file:istream line:10 column:1 - ^ Tag::read - parse error - file:istream line:13 column:1 - </fullatom> Tag::read - parse error - file:istream line:13 column:1 - ^ Tag::read - parse error - file:istream line:14 column:1 - </SCOREFXNS> Tag::read - parse error - file:istream line:14 column:1 - ^ Tag::read - parse error - file:istream line:16 column:1 - </FILTERS> Tag::read - parse error - file:istream line:16 column:1 - ^ Tag::read - parse error - file:istream line:20 column:1 - <Template pdb="input_t000__0_C1/3qupA_303_aln.cl0.pdb" weight=0.215731022402638 /work/robetta/jobs/19939/32293/01_01_cm/t000_/hybrid/cluster0.filt.dist_csts /> Tag::read - parse error - file:istream line:20 column:1 - ^ Tag::read - parse error - file:istream line:18 column:1 - <Hybridize name=hybridize stage1_scorefxn=stage1 stage2_scorefxn=stage2 fa_scorefxn=fullatom batch=1 stage1_increase_cycles=1.0 stage2_increase_cycles=1.0 linmin_only=0> Tag::read - parse error - file:istream line:18 column:1 - ^ Tag::read - parse error - file:istream line:17 column:1 - <MOVERS> Tag::read - parse error - file:istream line:17 column:1 - ^ Tag::read - parse error - file:istream line:1 column:1 - <dock_design> Tag::read - parse error - file:istream line:1 column:1 - ^ ERROR: false ERROR:: Exit from: ......srcutilitytagTag.cc line: 387 BOINC:: Error reading and gzipping output datafile: default.out |
7)
Message boards :
Number crunching :
Minirosetta 3.14
(Message 71360)
Posted 1 Oct 2011 by [AF>france>pas-de-calais]symaski62 Post: http://boinc.bakerlab.org/rosetta/result.php?resultid=452608726 Task ID 452608726 Name Aug20_needle_13start_test_SAVE_ALL_OUT__31431_61348_0 <core_client_version>6.12.33</core_client_version> <![CDATA[ <stderr_txt> [2011-10- 1 0:22:16:] :: BOINC:: Initializing ... ok. [2011-10- 1 0:22:16:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev42272.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/Aug20_13start_needle.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 86400 [2011-10- 1 10:18:19:] :: BOINC:: Initializing ... ok. [2011-10- 1 10:18:19:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev42272.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/Aug20_13start_needle.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 86400 Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage1 ... success! ERROR: std::abs( coordsys_rot.det() - 1.0 ) < 1e-6 ERROR:: Exit from: ......srccoreposesymmetryutil.cc line: 740 called boinc_finish </stderr_txt> ]]> |
8)
Message boards :
Number crunching :
Minirosetta 3.14
(Message 70762)
Posted 21 Jul 2011 by [AF>france>pas-de-calais]symaski62 Post: http://boinc.bakerlab.org/rosetta/result.php?resultid=437733634 Exit status -1073741819 (0xc0000005) Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00B26465 read attempt to address 0x00000008 Engaging BOINC Windows Runtime Debugger... |
9)
Message boards :
Number crunching :
Minirosetta 3.14
(Message 70635)
Posted 24 Jun 2011 by [AF>france>pas-de-calais]symaski62 Post: 25/06/2011 01:02:23 | rosetta@home | Started download of minirosetta_3.14_windows_intelx86.exe 25/06/2011 01:02:23 | rosetta@home | Started download of minirosetta_graphics_3.13_windows_intelx86.exe 3.14 version ? |
10)
Message boards :
Number crunching :
minirosetta 2.17
(Message 69741)
Posted 5 Mar 2011 by [AF>france>pas-de-calais]symaski62 Post: I caught several tasks ending too early which mentioned in Dec - now on my own computer. Dependence(what may cause this) is not found - all looks as normal for me. yes # cpu_run_time_pref: 7200 sec = 2H http://boinc.bakerlab.org/rosetta/prefs.php?subset=project Target CPU run time => 2H > 4H, 8H, 12H, 1 day BOINC Update = rosetta@home :) |
11)
Message boards :
Cafe Rosetta :
video rosetta@home 720p HD
(Message 69617)
Posted 9 Feb 2011 by [AF>france>pas-de-calais]symaski62 Post: http://www.youtube.com/watch?v=AUdqCeOnx84 |
12)
Message boards :
Number crunching :
Anyone else having trouble uploading results?
(Message 69242)
Posted 12 Jan 2011 by [AF>france>pas-de-calais]symaski62 Post: I still can't upload an old result, although a newer one has successfully uploaded. ok, problem servers :) 12/01/2011 16:24:45 rosetta@home Project file upload handler is missing 12/01/2011 16:24:45 rosetta@home Backing off 1 hr 36 min 48 sec on upload of abrelax_helixfrag_1vkk_SAVE_ALL_OUT_22843_2845_0_0 |
13)
Message boards :
Number crunching :
1 (0x1) error
(Message 69105)
Posted 10 Jan 2011 by [AF>france>pas-de-calais]symaski62 Post: http://boinc.bakerlab.org/rosetta/rah_status.php all Running (green) 09/01/2011 18:04:29 rosetta@home Temporarily failed download of yfsong_lrm_ghoo_sc12_run02_A.zip: connect() failed http://boinc.bakerlab.org/rosetta/result.php?resultid=391545744 --------------- 09/01/2011 18:12:16 rosetta@home Temporarily failed download of relax_options_lrm_ghoo_sc12_run02_A_yfsong: connect() failed 09/01/2011 18:12:16 rosetta@home Temporarily failed download of boinc_rb1_2hsh.pdb: connect() failed http://boinc.bakerlab.org/rosetta/result.php?resultid=391546865 |
14)
Message boards :
Cafe Rosetta :
video rosetta@home 720p HD
(Message 68894)
Posted 26 Dec 2010 by [AF>france>pas-de-calais]symaski62 Post: http://www.youtube.com/watch?v=XysoVkwn9WI 720p HD :) |
15)
Message boards :
Cafe Rosetta :
500 MB RAM of more
(Message 68893)
Posted 26 Dec 2010 by [AF>france>pas-de-calais]symaski62 Post: 58% RAM firefox + BOINC + R@H rosetta@home => 150 MB RAM of less ouf ! |
16)
Message boards :
Cafe Rosetta :
500 MB RAM of more
(Message 68891)
Posted 26 Dec 2010 by [AF>france>pas-de-calais]symaski62 Post: http://boinc.bakerlab.org/rosetta/result.php?resultid=389086141 ApBpEty_eed2_eed2_2qgo 500 MB RAM of More 1 Go RAM total 90% RAM firefox + BOINC + rosetta@home rohh ! |
17)
Message boards :
Rosetta@home Science :
Rosetta@home featured on Discovery website
(Message 68796)
Posted 11 Dec 2010 by [AF>france>pas-de-calais]symaski62 Post: http://www.miketyka.com/2010/12/energy_landscapes/ http://www.miketyka.com/data/mtyka_dkeedy_2010.pdf 12 pages :) 1Mo fichier |
18)
Message boards :
Number crunching :
At a bit of a loss
(Message 68652)
Posted 17 Nov 2010 by [AF>france>pas-de-calais]symaski62 Post: http://boincfaq.mundayweb.com/index.php?view=80&sessionID=6beaee9a77e8cbf27114ae3a750d9877 ERR_WRONG_SIZE -200 Your files have the wrong file size. |
19)
Message boards :
Number crunching :
minirosetta 2.17
(Message 68645)
Posted 16 Nov 2010 by [AF>france>pas-de-calais]symaski62 Post: yes, :) i am french 1 CPU => BOINC 0% CPU & rosetta 100% 2 CPU => BOINC 25% & rosetta 50% 2 CPU => BOINC 0% & rosetta 100% 4 CPU => BOINC 25% & rosetta 25%, 50%, 75%. 4 CPU => BOINC 0% & rosetta 100% |
20)
Message boards :
Number crunching :
Bad WU Batch - "TEMP_" all fail
(Message 68642)
Posted 16 Nov 2010 by [AF>france>pas-de-calais]symaski62 Post: http://www.boinc-wiki.info/Error_Code http://boincfaq.mundayweb.com/index.php?view=77&sessionID=a4d6f938094d567da63ac51e1a31dfb4 ERR_NOT_FOUND -161 This happens when you have an inconsistent client_state.xml file. Files aren't written to it. Task not found would be the error message. |
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