Posts by [AF>france>pas-de-calais]symaski62

1) Message boards : Number crunching : Minirosetta 3.52 (Message 77432)
Posted 30 Aug 2014 by [AF>france>pas-de-calais]symaski62
Post:
I am hoping to receive more of the "25 Hour" wu's and not those at 45-50 hours. The latter ones result in errors for me.


0 to 100% = (24 hour) minirosetta, (25 Hour) boinc


2) Message boards : Rosetta@home Science : design of protein inhibitors to target diseases (Message 77394)
Posted 23 Aug 2014 by [AF>france>pas-de-calais]symaski62
Post:
http://en.wikipedia.org/wiki/ZMapp

:)
3) Message boards : Rosetta@home Science : Rosetta@home Research Updates (Message 77350)
Posted 16 Aug 2014 by [AF>france>pas-de-calais]symaski62
Post:
http://www.ipd.uw.edu/wordpress/wp-content/uploads/2014/08/IPD_Update_WEB_8_14_14.pdf

3 pages

Standing on these successes, we recently integrated streamlined protein design methods for the de novo preparation of hyper-stable mini-protein scaffolds (30-40 amino acids) using high throughput gene synthesis and massively parallel screening methods which enable manufacturing and testing of tens of thousands of new proteins in a matter of weeks. With funding support from the Defense Threat Reduction Agency (DTRA), we recently launched a “War on Ebola” to test these new capabilities by designing medical countermeasures (MCMs) that could address the recurring hemorrhagic fever outbreaks in Africa.

what David Baker ?

"war on Ebola"
4) Message boards : Number crunching : Really small WU? (Message 73521)
Posted 23 Jul 2012 by [AF>france>pas-de-calais]symaski62
Post:
"Tc680" error :)

sorry
5) Message boards : Number crunching : Rosetta@Home version 3.31 (Message 73518)
Posted 22 Jul 2012 by [AF>france>pas-de-calais]symaski62
Post:
http://boinc.bakerlab.org/rosetta/result.php?resultid=521080073

Tc680_fold_and_dock_d2_frank_intra_inter_cst_wt_4.0_52292_394_0

# cpu_run_time_pref: 86400
======================================================
DONE ::     1 starting structures  55103.1 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================
BOINC :: WS_max 0



hier, je regarde image :) => ne pas 2 de plus (starting structures)

erreur :)

6) Message boards : Number crunching : Rosetta@Home version 3.31 (Message 73382)
Posted 7 Jul 2012 by [AF>france>pas-de-calais]symaski62
Post:
problem ^^

http://boinc.bakerlab.org/rosetta/results.php?userid=506&offset=0

Tag::read - parse error, printing backtrace.

Tag::read - parse error - file:istream line:3 column:1 - </TASKOPERATIONS>
Tag::read - parse error - file:istream line:3 column:1 - ^

Tag::read - parse error - file:istream line:7 column:1 - </stage1>
Tag::read - parse error - file:istream line:7 column:1 - ^

Tag::read - parse error - file:istream line:10 column:1 - </stage2>
Tag::read - parse error - file:istream line:10 column:1 - ^

Tag::read - parse error - file:istream line:13 column:1 - </fullatom>
Tag::read - parse error - file:istream line:13 column:1 - ^

Tag::read - parse error - file:istream line:14 column:1 - </SCOREFXNS>
Tag::read - parse error - file:istream line:14 column:1 - ^

Tag::read - parse error - file:istream line:16 column:1 - </FILTERS>
Tag::read - parse error - file:istream line:16 column:1 - ^

Tag::read - parse error - file:istream line:20 column:1 - <Template pdb="input_t000__0_C1/3qupA_303_aln.cl0.pdb" weight=0.215731022402638 /work/robetta/jobs/19939/32293/01_01_cm/t000_/hybrid/cluster0.filt.dist_csts />
Tag::read - parse error - file:istream line:20 column:1 - ^

Tag::read - parse error - file:istream line:18 column:1 - <Hybridize name=hybridize stage1_scorefxn=stage1 stage2_scorefxn=stage2 fa_scorefxn=fullatom  batch=1 stage1_increase_cycles=1.0 stage2_increase_cycles=1.0 linmin_only=0>
Tag::read - parse error - file:istream line:18 column:1 - ^

Tag::read - parse error - file:istream line:17 column:1 - <MOVERS>
Tag::read - parse error - file:istream line:17 column:1 - ^

Tag::read - parse error - file:istream line:1 column:1 - <dock_design>
Tag::read - parse error - file:istream line:1 column:1 - ^


ERROR: false
ERROR:: Exit from: ......srcutilitytagTag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out
7) Message boards : Number crunching : Minirosetta 3.14 (Message 71360)
Posted 1 Oct 2011 by [AF>france>pas-de-calais]symaski62
Post:
http://boinc.bakerlab.org/rosetta/result.php?resultid=452608726

Task ID 452608726
Name Aug20_needle_13start_test_SAVE_ALL_OUT__31431_61348_0


<core_client_version>6.12.33</core_client_version>
<![CDATA[
<stderr_txt>
[2011-10- 1  0:22:16:] :: BOINC:: Initializing ... ok.
[2011-10- 1  0:22:16:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully. 
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok 
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Loaded options.... ok 
Processed options.... ok 
Initializing random generators... ok 
Initialization complete. 
Initializing options.... ok 
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Loaded options.... ok 
Processed options.... ok 
Initializing random generators... ok 
Initialization complete. 
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev42272.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/Aug20_13start_needle.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup. 
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 86400
[2011-10- 1 10:18:19:] :: BOINC:: Initializing ... ok.
[2011-10- 1 10:18:19:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully. 
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok 
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Loaded options.... ok 
Processed options.... ok 
Initializing random generators... ok 
Initialization complete. 
Initializing options.... ok 
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
Loaded options.... ok 
Processed options.... ok 
Initializing random generators... ok 
Initialization complete. 
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev42272.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/Aug20_13start_needle.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup. 
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 86400
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage1 ... success! 

ERROR: std::abs( coordsys_rot.det() - 1.0 ) < 1e-6
ERROR:: Exit from: ......srccoreposesymmetryutil.cc line: 740
called boinc_finish

</stderr_txt>
]]>
8) Message boards : Number crunching : Minirosetta 3.14 (Message 70762)
Posted 21 Jul 2011 by [AF>france>pas-de-calais]symaski62
Post:
http://boinc.bakerlab.org/rosetta/result.php?resultid=437733634


Exit status -1073741819 (0xc0000005)

Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00B26465 read attempt to address 0x00000008

Engaging BOINC Windows Runtime Debugger...
9) Message boards : Number crunching : Minirosetta 3.14 (Message 70635)
Posted 24 Jun 2011 by [AF>france>pas-de-calais]symaski62
Post:
25/06/2011 01:02:23 | rosetta@home | Started download of minirosetta_3.14_windows_intelx86.exe
25/06/2011 01:02:23 | rosetta@home | Started download of minirosetta_graphics_3.13_windows_intelx86.exe

3.14 version ?


10) Message boards : Number crunching : minirosetta 2.17 (Message 69741)
Posted 5 Mar 2011 by [AF>france>pas-de-calais]symaski62
Post:
I caught several tasks ending too early which mentioned in Dec - now on my own computer. Dependence(what may cause this) is not found - all looks as normal for me.
The CPU target time was 2 hours and did not change.
http://boinc.bakerlab.org/rosetta/result.php?resultid=403175973
http://boinc.bakerlab.org/rosetta/result.php?resultid=403175972
http://boinc.bakerlab.org/rosetta/result.php?resultid=403005728

P.S.
In general, I like the version 2.17. Over the last >2 months no serious crashes or memory leaks at all.


yes

# cpu_run_time_pref: 7200 sec = 2H

http://boinc.bakerlab.org/rosetta/prefs.php?subset=project

Target CPU run time => 2H > 4H, 8H, 12H, 1 day

BOINC Update = rosetta@home

:)
11) Message boards : Cafe Rosetta : video rosetta@home 720p HD (Message 69617)
Posted 9 Feb 2011 by [AF>france>pas-de-calais]symaski62
Post:
http://www.youtube.com/watch?v=AUdqCeOnx84

12) Message boards : Number crunching : Anyone else having trouble uploading results? (Message 69242)
Posted 12 Jan 2011 by [AF>france>pas-de-calais]symaski62
Post:
I still can't upload an old result, although a newer one has successfully uploaded.
The old one still gets the "upload handler not present" message, the newer on didn't.

Is it possible that you somehow changed something in the upload handler URL, so that it would not be found? In my client_state.xml the right path is given as this:
<url>http://srv5.bakerlab.org/rosetta_cgi/file_upload_handler</url>
I can't find the srv5 on the server status page, should I change the number to "4"?


ok, problem servers :)

12/01/2011 16:24:45 rosetta@home Project file upload handler is missing
12/01/2011 16:24:45 rosetta@home Backing off 1 hr 36 min 48 sec on upload of abrelax_helixfrag_1vkk_SAVE_ALL_OUT_22843_2845_0_0
13) Message boards : Number crunching : 1 (0x1) error (Message 69105)
Posted 10 Jan 2011 by [AF>france>pas-de-calais]symaski62
Post:
http://boinc.bakerlab.org/rosetta/rah_status.php

all Running (green)


09/01/2011 18:04:29 rosetta@home Temporarily failed download of yfsong_lrm_ghoo_sc12_run02_A.zip: connect() failed

http://boinc.bakerlab.org/rosetta/result.php?resultid=391545744

---------------

09/01/2011 18:12:16 rosetta@home Temporarily failed download of relax_options_lrm_ghoo_sc12_run02_A_yfsong: connect() failed
09/01/2011 18:12:16 rosetta@home Temporarily failed download of boinc_rb1_2hsh.pdb: connect() failed


http://boinc.bakerlab.org/rosetta/result.php?resultid=391546865
14) Message boards : Cafe Rosetta : video rosetta@home 720p HD (Message 68894)
Posted 26 Dec 2010 by [AF>france>pas-de-calais]symaski62
Post:
http://www.youtube.com/watch?v=XysoVkwn9WI

720p HD :)
15) Message boards : Cafe Rosetta : 500 MB RAM of more (Message 68893)
Posted 26 Dec 2010 by [AF>france>pas-de-calais]symaski62
Post:
58% RAM firefox + BOINC + R@H

rosetta@home => 150 MB RAM of less

ouf !
16) Message boards : Cafe Rosetta : 500 MB RAM of more (Message 68891)
Posted 26 Dec 2010 by [AF>france>pas-de-calais]symaski62
Post:
http://boinc.bakerlab.org/rosetta/result.php?resultid=389086141

ApBpEty_eed2_eed2_2qgo

500 MB RAM of More

1 Go RAM total

90% RAM firefox + BOINC + rosetta@home

rohh !
17) Message boards : Rosetta@home Science : Rosetta@home featured on Discovery website (Message 68796)
Posted 11 Dec 2010 by [AF>france>pas-de-calais]symaski62
Post:
http://www.miketyka.com/2010/12/energy_landscapes/


http://www.miketyka.com/data/mtyka_dkeedy_2010.pdf

12 pages :) 1Mo fichier
18) Message boards : Number crunching : At a bit of a loss (Message 68652)
Posted 17 Nov 2010 by [AF>france>pas-de-calais]symaski62
Post:
http://boincfaq.mundayweb.com/index.php?view=80&sessionID=6beaee9a77e8cbf27114ae3a750d9877


ERR_WRONG_SIZE -200

Your files have the wrong file size.

19) Message boards : Number crunching : minirosetta 2.17 (Message 68645)
Posted 16 Nov 2010 by [AF>france>pas-de-calais]symaski62
Post:
yes, :) i am french

1 CPU => BOINC 0% CPU & rosetta 100%

2 CPU => BOINC 25% & rosetta 50%

2 CPU => BOINC 0% & rosetta 100%

4 CPU => BOINC 25% & rosetta 25%, 50%, 75%.

4 CPU => BOINC 0% & rosetta 100%



20) Message boards : Number crunching : Bad WU Batch - "TEMP_" all fail (Message 68642)
Posted 16 Nov 2010 by [AF>france>pas-de-calais]symaski62
Post:
http://www.boinc-wiki.info/Error_Code

ERR_NOT_FOUND || -161 || not found || inconsistent client state

:)


http://boincfaq.mundayweb.com/index.php?view=77&sessionID=a4d6f938094d567da63ac51e1a31dfb4

ERR_NOT_FOUND -161

This happens when you have an inconsistent client_state.xml file. Files aren't written to it.
Task not found would be the error message.



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