Posts by Greger

1) Message boards : Number crunching : Rosetta 4.1+ and 4.2+ (Message 105445) Posted 15 Mar 2022 by Greger Post: Stderr output <core_client_version>7.16.11</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255)</message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu @preetham_gen_127_0001_0001_0.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1753783 Using database: database_357d5d93529_n_methyl/minirosetta_database ERROR: Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2264 BOINC:: Error reading and gzipping output datafile: default.out 11:21:46 (108818): called boinc_finish(1) </stderr_txt> ]]> Looks like it is a batch to "preetham_gen" units that affect host. all these error out after a few sec but not other units.
2) Message boards : Number crunching : Turn off Virtualbox task from host details (Message 105436) Posted 13 Mar 2022 by Greger Post: Alright thanks computezrmle will add this.
3) Message boards : Number crunching : Turn off Virtualbox task from host details (Message 105433) Posted 12 Mar 2022 by Greger Post: For my knowledge it got to be sum of task done or something. I have checked with main boinc-client the main process and fire up an additional instance of boinc-client on same computer. So both host are identical and both host detect virtualbox and have work running an also completed work. The only change is timestamp of created and added to project. Also with this sum of credit and RAC is the only change. old host: https://boinc.bakerlab.org/rosetta/results.php?hostid=6002555 (have this option) new host: https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=6183113 (Do not have option) So with this we i have a year old host that do have but other don't so thought it could be it. But then another check with new host and compare old these are also on same computer but another hostid: old: https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=5974656 (have this option) new: https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=6185273 (have this option) In this example same lineup with old and new and identical computer just fire it up with new instance of boinc-client (same domainname also) and here both have this options. I restart computer if i upgrade kernel or got an update to virtualbox also there is an issue that boinc-client start before virtualbox service and i deal with it with cronjob to start later after service of VirtualBox or restart boinc-client if service is lost before take it in progress after reboot. On instance added is mostly unaffected as they start from batch after virtualbox service is started but in some cases they "could" lose connection to client or wrapper. In that case i restart computer because it is started as daemon in shell/batch. This would be my other possible thought of change but 6185273 got this as well with old host so that would take out this possibility of site divide/separate these hosts. It got to be a parameter/section of site that is the factor in this.
4) Message boards : Number crunching : Turn off Virtualbox task from host details (Message 105432) Posted 12 Mar 2022 by Greger Post: That was my first thought also but i found several host without this option meanwhile have done several vm task and have a few in progress. example: hostid 6183117: https://boinc.bakerlab.org/rosetta/results.php?hostid=6183117 This host is only running with application rosetta python projects v1.03 (vbox64) x86_64-pc-linux-gnu only for now and do not have this option. and another https://boinc.bakerlab.org/rosetta/results.php?hostid=6182716 All have Virtualbox but some host i have not restarted virtualbox service so boinc is not detected on all host but that does not hosts id mention here.
5) Message boards : Number crunching : Turn off Virtualbox task from host details (Message 105428) Posted 12 Mar 2022 by Greger Post: Hi Today i notice that some (not all) have the option to skip "Virtualbox VM Task" under merge host. https://imgur.com/a/8qy1ICE (didn't get img to work so changed to url) My question would be why not all host have it what does it need from site to trigger to add this button on this page?
6) Message boards : Number crunching : New kind of app on Ralph (Message 101965) Posted 30 May 2021 by Greger Post: Got my first task done and valid. https://boinc.bakerlab.org/rosetta/result.php?resultid=1388114125
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 101100) Posted 6 Apr 2021 by Greger Post: <message> process exited with code 1 (0x1, -255)</message> ERROR: ERROR: FragmentIO: could not open file 00001.500.6mers ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out
8) Message boards : Number crunching : Rosetta 4.1+ and 4.2+ (Message 94239) Posted 12 Apr 2020 by Greger Post: <core_client_version>7.16.1</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255)</message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.12_x86_64-pc-linux-gnu -silent_gz -mute all -s chainA_chainB_20_04_15_28_13.pdb -run:protocol jd2_scripting -jd2:dd_parser -parser:protocol local_docking_20_04_15_28_13.xml -out:nstruct 10000 -jd2:ntrials 100 -ex1 -ex2aro -beta -use_input_sc -in:file:native chainA_chainB_20_04_15_28_13.pdb -out:file:silent default.out -out:file:silent_struct_type protein -run:write_failures false -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1004427 ERROR: Cannot determine file type. Current supported types are: PDB, CIF, SRLZ, MMTF ERROR:: Exit from: src/core/import_pose/import_pose.cc line: 380 BOINC:: Error reading and gzipping output datafile: default.out 15:03:18 (67461): called boinc_finish(1) </stderr_txt> ]]> Task: https://boinc.bakerlab.org/rosetta/result.php?resultid=1147139880 Unsupported file? any solution for this? Worked well but recently got this issue and host got 4 valid with application Rosetta v4.12 x86_64-pc-linux-gnu.
9) Message boards : Cafe Rosetta : Kings Distributed Systems - Alpha Registration (Message 87258) Posted 10 Sep 2017 by Greger Post: bYvqbI1t5o-2bV-L3gh2mTv4O6BKOcFB
10) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 86718) Posted 24 Jun 2017 by Greger Post: Website looks great thanks for upgrade https://boinc.bakerlab.org/rosetta/stats/ Starts url are empty. You guys might already on it.