Posts by James W
|
1)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 99400)
Posted 26 Oct 2020 by James W Post: Name: CLPPPJS8_255_ClpP1P2_stub_justPHE_0001_SAVE_ALL_OUT_1018533_362_1 Application: Rosetta v4.20 windows_x86_64 Device: 1759960 Task: 1284630939. WU: 1150838856 Status: Error while computing Exit status: -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION Errors: Too many errors (may have bug). Too many total results. Stderr output: (unknown error) - exit code -1073741819 (0xc0000005) I was wingman on this new for me type WU and we both got same error. Run time about 15 sec., so no big loss. Don't see any more like this in my current queue. |
|
2)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 99239)
Posted 4 Oct 2020 by James W Post: Name: DNANX53C_DnaN_53C_refine_26_stripped_relax_-1_-1_3_45942938_4mers_0002_SAVE_ALL_OUT_1014073_330_0 Errors: Too many errors (may have bug) Too many total results.Well, wingman errored out in same approximate time with same errors. Appears this type of task requiring something many hosts are missing. I do note that at least 1 or 2 of these tasks DID validate on my system(s). Not too many of them rec'd, thank goodness. |
|
3)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 99223)
Posted 3 Oct 2020 by James W Post: Name: DNANX53C_DnaN_53C_refine_26_stripped_relax_-1_-1_3_45942938_4mers_0002_SAVE_ALL_OUT_1014073_330_0 Application: Rosetta v4.20 windows_x86_64 Device: 3710630 Task: 1270233986. WU: 1138185669 Status: Error while computing Exit status: -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION Stderr output: (unknown error) - exit code -1073741819 (0xc0000005)Also rec'd identical error on host 1759960 for task 1270067381. Will see how wingman fares. |
|
4)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 99210)
Posted 1 Oct 2020 by James W Post: Name: rb_09_28_39311_38407_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_08_11_1013728_48_0 Application: Rosetta v4.20 windows_x86_64 Device: 3710630 Task: 1268869051. WU: 1137002647 Status: Error while computing Exit status: 1 (0x00000001) Unknown error code Stderr output: <message>Incorrect function. (0x1) - exit code 1 (0x1)</message>1. Coder/programmer needs to spell "occurred" correctly. 2. Thankful still able to get credit for host's efforts. Note that I rec'd more credit than wingman. |
|
5)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 99180)
Posted 29 Sep 2020 by James W Post: Name: cd28_1yjd_graft_v1_SAVE_ALL_OUT_IGNORE_THE_REST_7xw0rf6z_1013410_1_0 Application: Rosetta v4.20 windows_x86_64 Device: 3710630 Task: 1267451815. WU: 1135747396 Status: Completed and validated Peak working set size 1,351.17 MB Peak swap size 1,324.82 MB Stderr output: <stderr_txt>ftMover.cc:537And continues repeating above until apparently runs out of space. FYI -- Just noting we have another new task type with these same errors/exceptions which still create valid results. The similarity appears to be that these tasks all involve "scaffold grafts." |
|
6)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 99163)
Posted 27 Sep 2020 by James W Post: Name: vegf_site1_graft_v1_SAVE_ALL_OUT_IGNORE_THE_REST_3vc7wl1o_1013290_1 Application: Rosetta v4.20 windows_x86_64 Device: 3710630 Task: 1266413150. WU: 1134838287 Status: Completed and validated Peak working set size 1,234.59 MB Peak swap size 1,209.23 MB Stderr output: <stderr_txt>aftMover.cc:537And continues repeating above until apparently runs out of space. Just noting we have a new task type with these same errors/exceptions which still create valid results. FYI. Get these same results on both of my hosts. |
|
7)
Message boards :
Number crunching :
Record days.
(Message 99162)
Posted 27 Sep 2020 by James W Post: That would make sense. The lowering of credit numbers might not be due solely to there being less "crunchers" or less hosts working on R@H. With my 2 moderately powered hosts running with 4 cores (one physical and one Hyper-threaded) and 8 G RAM each I can process about 18 WUs per day, though the amount of credit varies widely depending on the type of task being crunched. Viewing the statistics chart in BOINC manager shows this. However, are you looking at number of credits, number of hosts in service, or a combination? |
|
8)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98923)
Posted 9 Sep 2020 by James W Post: Name: kp8RjDVk_fold_and_dock_SAVE_ALL_OUT_1009390_4466 Application: Rosetta v4.20 windows_x86_64 Device: 1759960 Task: 1255806099. WU: 1125665905 Status: Error while computing Exit status: -529697949 (0xE06D7363) Unknown error code Errors: Too many errors (may have bug). Too many total results. Peak working set size 5,967.66 MB Peak swap size 8,158.26 MB Peak disk usage 26.02 MB Stderr output: Unhandled Exception Detected...This was one of 3 errors today with my two hosts, working the above "fold and dock" series. This particular host has 8 GB RAM. It held out for 18+ minutes before the memory demand noted above overwhelmed it and it errored out the task. My host was the first to crunch and the wingperson with 16 GB RAM also errored for same reason. This is the same series of tasks which many here have commented on -- memory gobblers. |
|
9)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98643)
Posted 24 Aug 2020 by James W Post: Device: 1759960 Task: 1245719883. WU: 1115277497 Puzzling credit amount. I was assigned this task after the original host did not complete by deadline. The original host and I both rec'd 26.22 credits. My host worked almost 8 hrs (CPU time) whereas original host only worked less than 1 hr., with same results. Unsure of logic of this. Computer ID 5135728And my Stderr output, etc.: Computer ID 1759960 |
|
10)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98593)
Posted 19 Aug 2020 by James W Post: The recent posts are all rather peculiar to me.And today is the first day i don't have any in my current Task list either, after having them continuously for over a week and a half. To get back into the subject of the thread (Rosetta 4.2+), I rec'd 5 more foldit1 validation errors for one of my Android devices. However, these were all resent tasks for not starting by deadline, first sent 8/15. This is forgivable, as would be difficult for system to screen for problematic tasks in this case. These had all originally been sent to Windows or Linux systems. It appears that these are slowly getting cleaned out of the system thankfully. |
|
11)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98537)
Posted 16 Aug 2020 by James W Post: And again I continue to receive validation errors (another 8 total today, 8-15-20,) on my Android device (3396190) for the foldit1 tasks. Again I question why these clearly erroneous tasks continue to be created! The batch in question today were created during the day of 8/15. The admins and researcher(s) involved with this particular set of tasks must know by now that this particular set of tasks won't produce anything useful! Of note, I've only recently seen these errors/tasks on my Android devices -- not on my PCs -- for whatever reason. Examples of the specific validation errors have previously been quoted by myself and others in this thread. Today's errors include the following tasks: 1. Name: foldit1_2008762_0003_00_asym_dock_SAVE_ALL_OUT_1005836_4487 Task: 1241587912 2. Name: foldit1_2008835_c016_00_asym_dock_SAVE_ALL_OUT_1005885_4489 Task: 1241587932 3. Name: foldit1_2008835_0008_00_asym_dock_SAVE_ALL_OUT_1005883_4423 Task: 1241586218 Thank you, Grant, for your expert logical arguments regarding this continued issue! |
|
12)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98513)
Posted 15 Aug 2020 by James W Post: I continue to receive validation errors (8 total today) on my Android devices (3182472 and 3396190) for the foldit1 tasks. Again I question why these clearly erroneous tasks continue to be created! The batch in question today were created the morning of 8/14. What is to be gained by this waste of time, effort, and resources? The admins must know by now this particular set of tasks won't produce anything useful! Examples of the specific validation errors have previously been quoted by myself and others in this thread. Today's errors include the following tasks: 1. Name: foldit1_2008707_s008_00_asym_dock_SAVE_ALL_OUT_1005682_1795 Task: 1240650010 2. Name: foldit1_2008707_s007_00_asym_dock_SAVE_ALL_OUT_1005684_1795 Task: 1240650112 3. Name: foldit1_2008663_y239_00_asym_dock_SAVE_ALL_OUT_1005837_1622 Task: 1240466476 Etc. |
|
13)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98505)
Posted 14 Aug 2020 by James W Post: Re: WU 1110767160 - simsjn_out_Protein_A_v5_contacts_36_7_L20L2L1L2L2L2L2L3L20_fragments_abinitio_SAVE_ALL_OUT_1006608_826_0 Just wanted to note that my wingman also got the same error as I, with notation "Too many errors (may have bug) Too many total results." |
|
14)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98499)
Posted 13 Aug 2020 by James W Post: Name: simsjn_out_Protein_A_v5_contacts_36_7_L20L2L1L2L2L2L2L3L20_fragments_abinitio_SAVE_ALL_OUT_1006608_826_0 Application: Rosetta v4.20 windows_x86_64 Device: 1759960 Task: 1238685086. WU: 1110767160 Status: Error while computing Exit status: 1 (0x00000001) Unknown error code Stderr output: Incorrect function. |
|
15)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98498)
Posted 13 Aug 2020 by James W Post: I continue to receive validation errors (36 total today!) on my Android devices for the foldit1 tasks, today adding my Samsung phone (3182472). The only difference in the error descriptions of the 2 devices so far is that the Amazon tablet (3396190) includes the added remarks: WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x28acnot mentioned in the Samsung error. Of interest is the fact that Rosetta has not elected to rerun these particular validation errors with a wingperson. They have marked all these errors as "canonical." Also of interest is that all these errored tasks were created just this morning, despite the many reports of problems with this series of tasks!!! Doesn't appear anyone in "authority" bothers to read these posts, or just ignores them!! Examples of the validation errors previously quoted by myself in this thread, as well as by Grant. Today's errors include the following tasks: 1. Name: foldit1_2008492_0006_00_asym_dock_SAVE_ALL_OUT_1005840_1234 Task: 1239403625 on Amazon. 2. Name: foldit1_2001822_s003_00_asym_dock_SAVE_ALL_OUT_1005892_1233 Task: 1239397848 on Samsung. |
|
16)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98488)
Posted 12 Aug 2020 by James W Post: More tasks which failed to validate for my Amazon tablet (3396190), as noted in message 98480, include:
Task: 1238599419 2. Name: foldit1_2008899_0006_00_asym_dock_SAVE_ALL_OUT_1005735_1039 Task: 1238585227 3. Name: foldit1_2008762_s009_00_asym_dock_SAVE_ALL_OUT_1005863_1039 Task: 1238585235 4. Name: foldit1_2001822_0008_00_asym_dock_SAVE_ALL_OUT_1005689_1031 Task: 1238545676 5. Name: foldit1_2001209_0006_00_asym_dock_SAVE_ALL_OUT_1005688_1031 Task: 1238545660 6. Name: foldit1_2008663_y239_00_asym_dock_SAVE_ALL_OUT_1005837_947 Task: 1238195355 7. Name: foldit1_2008663_s004_00_asym_dock_SAVE_ALL_OUT_1005838_947 Task: 1238195616 8. Name: foldit1_2008663_y688_00_asym_dock_SAVE_ALL_OUT_1005783_946 Task: 1238189780 Plus 5 more tasks. |
|
17)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98482)
Posted 11 Aug 2020 by James W Post: Other tasks which failed to validate for my Amazon tablet (3396190) included:
Task: 1238189780
Task: 1238189817
Task: 1238132060
Task: 1238131939
Task: 1238130586
Task: 1238130600
|
|
18)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98480)
Posted 11 Aug 2020 by James W Post: Another set of Foldit1 invalidation errors on my Android tablet (an Amazon Fire tablet): Name: foldit1_2008663_y688_00_asym_dock_SAVE_ALL_OUT_1005783_946_0 Application: Rosetta v4.20 arm-android-linux-gnu Device: 3396190 Task: 1238189780. WU: 1110337695 Status: Validate error Exit status: 0 (0x00000000) Stderr output: WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x28ac |
|
19)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98439)
Posted 8 Aug 2020 by James W Post: First Android task I've processed in ages (also first Android error in ages). Also had a similar Validate Error for another Android "foldit" task. Name: foldit1_2001331_0001_00_asym_dock_SAVE_ALL_OUT_1005715_293_0 Application: Rosetta v4.20 arm-android-linux-gnu Device: 3396190 Task: https://boinc.bakerlab.org/rosetta/result.php?resultid=1235917770]1235917770[/url]. WU: 1108336404 Status: Validate error Exit status: 0 (0x00000000) Stderr output: WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x28ac |
|
20)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 98438)
Posted 8 Aug 2020 by James W Post: Name: foldit0_2001734_0009_relax_dock_SAVE_ALL_OUT_1005379_3 Application: Rosetta v4.20 windows_x86_64 Device: 1759960 Task: 1234502102. WU: 1107127887 Status: Error while computing. Exit status: -1 (0xFFFFFFFF) Unknown error code Errors: Too many errors (may have bug) Too many total results. Stderr output: (unknown error) - exit code -1 (0xffffffff)Appears quite similar to Grant's reported error. Wingman also failed, but different error code (Signal 11). Note my system Windows and that system Apple. |
Next 20
©2024 University of Washington
https://www.bakerlab.org