Posts by Evan

21) Message boards : Number crunching : minirosetta 2.05 (Message 65680) Posted 30 Mar 2010 by Evan Post: I have four of the tedor-cs... programs running at the moment on this computer. They all are working perfectly but only three graphs can be activated. The fourth does not respond.
22) Message boards : Number crunching : minirosetta 2.05 (Message 65658) Posted 28 Mar 2010 by Evan Post: 326722657 (placestub_alt_denovo_1zvy_1z2m_ProteinInterfaceDesign_21Mar2010_18705_22_0) failed on W7 ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 137 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Add me to the list with tedor-cs_-tdonly-1-gb3__18708_4647 ERROR: rsd_type_list.size() ERROR:: Exit from: ....srccorefragmentFrame.cc line: 62 BOINC:: Error reading and gzipping output datafile: default.out
23) Message boards : Number crunching : minirosetta 2.05 (Message 65348) Posted 16 Feb 2010 by Evan Post: CPU time at last checkpoint 00:35:26 CPU time 06:02:29] Try closing down BOINC and re-opening it. That seems to do the trick.
24) Message boards : Rosetta@home Science : Possible cancer cure found in plant (Message 65287) Posted 11 Feb 2010 by Evan Post: I'm just tired of the limitations of human competency to solve problems in a fast and efficient manner, instead of fumbling in the dark for eons - ONLY because of the limitations of human intelligence/competency. How fast would an extremely advanced AGI solve basically all of our medical problems? So clearly spinning 7 (or 10 or 15) years into a "reasonable" timeframe is masquerading the deeply hurting truth of human helplessness in the face of greater problems - all of while hundreds of thousands of people will die BECAUSE OF THAT - human incompetency, nothing else. If you claim otherwise, be my guest. I guess the lack of outrage at such timescales where there is complete knowledge of the huge amount of people that will die is the result of resignation - that we, as humanity, simply can't do any better. And looking at that truth in the eye is like looking the devil straight in the eye. Utter dread, horror. I guess this comes out as kind of misanthropic but I'm just so sick and f*****g tired of my own and humanity's incompetency, helplessness etc. And yes, I know, my rage/frustration/etc is completely impotent, it changes nothing. Just releasing some steam, as per always. We trained hard, but it seemed that every time we were beginning to form up into teams we would be reorganized. Presumably the plans for our employment were being changed. I was to learn later in life that, perhaps because we are so good at organizing, we tend as a nation to meet any new situation by reorganizing; and a wonderful method it can be for creating the illusion of progress while producing confusion, inefficiency and demoralization Petronius (c. AD 27-66)
25) Message boards : Cafe Rosetta : general chat here (Message 65279) Posted 11 Feb 2010 by Evan Post: Al Gore needs to have his money and statue taken away, this is NOT Global Warming!! Don't go on one or two seasons evidence. Global warming is long term and can produce swings on both sides of the norm. We have plenty of evidence of warming, with moths and other insects starting to come up from the warmer continent.
26) Message boards : Number crunching : minirosetta 2.05 (Message 65278) Posted 11 Feb 2010 by Evan Post: It would appear that some of these lr15clusfa.. work units have a problem. lr15clusfa_opt_.2cmx.2cmx.SAVE_ALL_OUT_IGNORE_THE_REST.c.2.28.pdb.pdb.JOB_17759_1_0 The previous one I reported has also failed on its second attempt
27) Message boards : Number crunching : minirosetta 2.05 (Message 65252) Posted 9 Feb 2010 by Evan Post: This one failed after about 20 seconds lr15clusfa_opt_.1ail.1ail.IGNORE_THE_REST.c.1.24.pdb.pdb.JOB_17559_3 Exit status -1073741819 (0xc0000005) Reason: Access Violation (0xc0000005) at address 0x006D2D46 read attempt to address 0x00000000
28) Message boards : Number crunching : Jobs lock up and never finish (Message 65205) Posted 4 Feb 2010 by Evan Post: Jobs such as these never finished, in the BOINC client they look frozen but the job doesn't utilize any cpu I have had a few of these. I find that if you either suspend that work unit and then reactivate it, or exit BOINC and restart. The work unit then usually competes normally.
29) Message boards : Number crunching : minirosetta 2.05 (Message 65187) Posted 3 Feb 2010 by Evan Post: I aborted lr15clus_opt_.1ptq.1ptq.IGNORE_THE_REST.c.3.21.pdb.pdb.JOB_17471_3_0 after 50 minutes. Stuck on model 1, step 0, with funny looking graphics. I no longer have the patience to see how these turn out. Instead of aborting just try closing and restarting Boinc. That often does the trick.
30) Message boards : Number crunching : What's with all the errors??? (Message 65142) Posted 28 Jan 2010 by Evan Post: Having restarted these cl1... work units they finished correctly at just over 6 hours.
31) Message boards : Number crunching : What's with all the errors??? (Message 65141) Posted 28 Jan 2010 by Evan Post: nope, actual cpu time I am running two of the cl1... and found that they were going for over ten hours while the cpu time said 2 and 4 hours respectively. After restarting boinc they are running from their last checkpoint and ironically both are working on model 10
32) Message boards : Number crunching : minirosetta 2.05 (Message 65122) Posted 26 Jan 2010 by Evan Post: Add me to the list with these two that failed within 17 seconds cl1.1enh.1enh.IGNORE_THE_REST.c.2.32.pdb.pdb.JOB_17243_1 cl1.1enh.1enh.IGNORE_THE_REST.c.2.21.pdb.pdb.JOB_17243_1_0
33) Message boards : Rosetta@home Science : Validation (pharmaceutical companies) (Message 65117) Posted 26 Jan 2010 by Evan Post: Not sure if that answers your question? Yes it does thank you. I was thinking along the lines of once a bond had been produced then an improvement to the model might produce an even better bond, but as you say it would be a different substrate.
34) Message boards : Rosetta@home Science : Validation (pharmaceutical companies) (Message 65115) Posted 26 Jan 2010 by Evan Post: How is validation done by a company using algorithms developed by Rosetta? As I understand it all computer software, equipment, procedures and results have to be replicated to the level demanded by a country's FDA (or similar). This may cost the company vast sums to prove its acceptability. Therefore if a company uses a successful Rosetta algorithm and finds a suitable drug, what happens if there is an improvement to this algorithm? Do they have to repeat all this expensive validation?
35) Message boards : Cafe Rosetta : BOINC/Rosetta and GNU way of thinking (Message 65100) Posted 25 Jan 2010 by Evan Post: The work that is being processed will not be sold to a pharmaceutical company because they wouldn't want them. The results are in the public domain so that they could not secure a patent on them. In addition a rival company could look at the same results and deduce what this company was trying to develop. The completed algorithms are what the companies want and are made freely available to companies or other universities to use and spend years trying to develop new drugs. Baker Lab is not permitted to sell their algorithms to any company.
36) Message boards : Number crunching : minirosetta 2.05 (Message 65091) Posted 24 Jan 2010 by Evan Post: This one failed after about 40 seconds cst2.loopbuild_threading_hb_i1705_IGNORE_THE_REST_17160_389_0 - exit code -1073741819 (0xc0000005) - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0054FC53 read attempt to address 0xFFFFFFC0
37) Message boards : Number crunching : minirosetta 2.05 (Message 65011) Posted 16 Jan 2010 by Evan Post: http://boinc.bakerlab.org/rosetta/result.php?resultid=310901552 This one stalled twice at about 5 hrs 35 mins but was running for over 9 hours. I restarted boinc and it then stalled again in the same place.
38) Message boards : Number crunching : minirosetta 2.05 (Message 64984) Posted 15 Jan 2010 by Evan Post: Although I didnt grab a screenshot the task details of the work unit show "application version 2.05" You can check it out at http://boinc.bakerlab.org/rosetta/result.php?resultid=310562856. I wish i could give you guys more information, anything else i can do to help you guys solve this issue? All other work so far has gone through fine, but upon further investigation the common factor is windows 7. I have a boinc_filtered loopbuild_threading running now at 33% which gave me problems on 2.03, so i will see how it goes on 2.05 and give an update. I wouldn't worry about it. A number of these have failed. I have just sent in two that failed on their second run.
39) Message boards : Number crunching : SERVER PROBLEMS - 2. (Message 64891) Posted 10 Jan 2010 by Evan Post: rah_validator_beta bk2 Not running rah_validator_mini bk1 Not running rah_assimilatorbeta1 bk1 Not running rah_assimilatorbeta2 bk1 Not running rah_assimilatorbeta3 bk2 Not running rah_assimilatorbeta4 bk2 Not running Still showing the same. At the time the server was down and I couldn't uldl for maybe 15 hours. Was that just me? This seemed to get 'solved' 6 or 8 hours ago as I'm getting transfers and credits awarded just fine now. I guess it's just that the server page doesn't seem to be telling the truth atm. Or am I wrong (if so, ignore me). Ignore you? Wouldn't dream of it! I also had results validated despite what the server page. Looks like a case of "don't believe what you read in the papers".
40) Message boards : Cafe Rosetta : Problems with latest version of Mozilla Firefox... (Message 64874) Posted 9 Jan 2010 by Evan Post: Everything went smoothly and haven't had any problems.

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