Posts by kotenok2000

1) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109462) Posted 11 days ago by kotenok2000 Post: Graphics work with these tasks.
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109377) Posted 13 Jun 2024 by kotenok2000 Post: Did they port rosetta python projects to native windows? Try to increase pagefile size. It helped with gpugrid python project. It even uses gpu.
3) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109371) Posted 12 Jun 2024 by kotenok2000 Post: tasks starting with RosettaVS run for 8 hours for me.
4) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109369) Posted 12 Jun 2024 by kotenok2000 Post: Hal jobs run for three hours because subtasks are short and produce many results per task. Other jobs run for 8 hours.
5) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109341) Posted 5 Jun 2024 by kotenok2000 Post: They probably rebooted it.
6) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109339) Posted 5 Jun 2024 by kotenok2000 Post: Everything is running as of as of 5 Jun 2024, 10:16:46 UTC
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109278) Posted 23 May 2024 by kotenok2000 Post: RosettaVS tasks use more memory than 8a_hal
8) Message boards : Number crunching : Vbox_image (Message 109253) Posted 15 May 2024 by kotenok2000 Post: I think it downloads gzip compressed and unpacks after download.
9) Message boards : Number crunching : Vbox_image (Message 109251) Posted 15 May 2024 by kotenok2000 Post: I think it was 10 gb with new workunits.
10) Message boards : Number crunching : Vbox_image (Message 109248) Posted 14 May 2024 by kotenok2000 Post: Does this script run cleanup command to reduce file size? like qemu-img compact --filesystemaware --filename <filename> Because rosetta needs that.
11) Message boards : Cafe Rosetta : Rosetta@Home server (Message 109216) Posted 2 May 2024 by kotenok2000 Post: Ubuntu Pro is free for personal use. Would Canonical notice if rosetta got Ubuntu Pro for personal use for free on several emails?
12) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109206) Posted 28 Apr 2024 by kotenok2000 Post: Mine look like this. (This is really one of them.) Project Rosetta@home Name RosettaVS_SAVE_ALL_OUT_NOJRAN_CHIP_8EHZ_fulldb_IGNORE_THE_REST_9GjqZI_5_4100_2977977_2_0 Application Rosetta Beta 6.05 Workunit name RosettaVS_SAVE_ALL_OUT_NOJRAN_CHIP_8EHZ_fulldb_IGNORE_THE_REST_9GjqZI_5_4100_2977977_2 State Running Received 4/28/2024 8:42:31 AM Report deadline 5/1/2024 8:42:30 AM Estimated app speed 2.78 GFLOPs/sec Estimated task size 80 000 GFLOPs CPU time at last checkpoint 00:00:00 CPU time 02:43:13 Elapsed time 02:46:22 Estimated time remaining 06:19:37 Fraction done 20.911% Virtual memory size 2 200.04 MB Working set size 1 973.22 MB Directory slots/4 Process ID 193635 Debug State: 2 - Scheduler: 2
13) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109195) Posted 26 Apr 2024 by kotenok2000 Post: It resolves database path incorrectly.
14) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109174) Posted 25 Apr 2024 by kotenok2000 Post: It sets 8 hours for 4.20 and 3 for 6.05
15) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109147) Posted 22 Apr 2024 by kotenok2000 Post: I hope they will still get points when script runs, because each task would still generate unique data.
16) Message boards : Number crunching : libGL.so.1 No such file or directory (Message 109141) Posted 22 Apr 2024 by kotenok2000 Post: You can install it with sudo apt install libgl1
17) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109119) Posted 16 Apr 2024 by kotenok2000 Post: We should restrict registering to invites-only to reduce spam posts. Projects that have implemented registration protection: https://gene.disi.unitn.it/test/ https://srbase.my-firewall.org/sr5/ https://lhcathomedev.cern.ch/lhcathome-dev/
18) Message boards : Number crunching : Graphics do not work with linux version of rosetta beta. (Message 109110) Posted 13 Apr 2024 by kotenok2000 Post: It works if i run graphical app manually with manually specified database path user@ubuntutheoryvm:/var/lib/boinc/slots/6$ ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/ Starting graphics.. core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: 2023.36.post.dev+5.master.76e2f63f750 76e2f63f750b32d50338385a5e1d99ecb36da226 git@github.com:RosettaCommons/main.git 2023-09-11T11:01:30 core.init: command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/ basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=935815675 seed_offset=0 real_seed=935815675 basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=935815675 RG_type=mt19937 Opened semaphore Attached shared memory segment core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 985 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.971783 seconds.
19) Message boards : Number crunching : Graphics do not work with linux version of rosetta beta. (Message 109109) Posted 13 Apr 2024 by kotenok2000 Post: Graphics do not work with linux version of rosetta beta. When i start graphical app it immediately closes and outputs this in stderrgfx.txt: cat /var/lib/boinc/slots/6/stderrgfx.txt ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145 23:25:39 (68987): called boinc_finish(0) It should look for database at /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database , not /var/lib/boinc/projects/database
20) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109107) Posted 12 Apr 2024 by kotenok2000 Post: Graphics do not work with linux version of rosetta beta. When i start graphical app it immediately closes and outputs this in stderrgfx.txt: cat /var/lib/boinc/slots/6/stderrgfx.txt ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145 23:25:39 (68987): called boinc_finish(0) It should look for database at /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database , not /var/lib/boinc/projects/database

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