Posts by kotenok2000

1) Message boards : Cafe Rosetta : Rosetta@Home server (Message 109216) Posted 3 days ago by kotenok2000 Post: Ubuntu Pro is free for personal use. Would Canonical notice if rosetta got Ubuntu Pro for personal use for free on several emails?
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109206) Posted 7 days ago by kotenok2000 Post: Mine look like this. (This is really one of them.) Project Rosetta@home Name RosettaVS_SAVE_ALL_OUT_NOJRAN_CHIP_8EHZ_fulldb_IGNORE_THE_REST_9GjqZI_5_4100_2977977_2_0 Application Rosetta Beta 6.05 Workunit name RosettaVS_SAVE_ALL_OUT_NOJRAN_CHIP_8EHZ_fulldb_IGNORE_THE_REST_9GjqZI_5_4100_2977977_2 State Running Received 4/28/2024 8:42:31 AM Report deadline 5/1/2024 8:42:30 AM Estimated app speed 2.78 GFLOPs/sec Estimated task size 80 000 GFLOPs CPU time at last checkpoint 00:00:00 CPU time 02:43:13 Elapsed time 02:46:22 Estimated time remaining 06:19:37 Fraction done 20.911% Virtual memory size 2 200.04 MB Working set size 1 973.22 MB Directory slots/4 Process ID 193635 Debug State: 2 - Scheduler: 2
3) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109195) Posted 9 days ago by kotenok2000 Post: It resolves database path incorrectly.
4) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109174) Posted 10 days ago by kotenok2000 Post: It sets 8 hours for 4.20 and 3 for 6.05
5) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109147) Posted 12 days ago by kotenok2000 Post: I hope they will still get points when script runs, because each task would still generate unique data.
6) Message boards : Number crunching : libGL.so.1 No such file or directory (Message 109141) Posted 12 days ago by kotenok2000 Post: You can install it with sudo apt install libgl1
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109119) Posted 19 days ago by kotenok2000 Post: We should restrict registering to invites-only to reduce spam posts. Projects that have implemented registration protection: https://gene.disi.unitn.it/test/ https://srbase.my-firewall.org/sr5/ https://lhcathomedev.cern.ch/lhcathome-dev/
8) Message boards : Number crunching : Graphics do not work with linux version of rosetta beta. (Message 109110) Posted 22 days ago by kotenok2000 Post: It works if i run graphical app manually with manually specified database path user@ubuntutheoryvm:/var/lib/boinc/slots/6$ ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/ Starting graphics.. core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: 2023.36.post.dev+5.master.76e2f63f750 76e2f63f750b32d50338385a5e1d99ecb36da226 git@github.com:RosettaCommons/main.git 2023-09-11T11:01:30 core.init: command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/ basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=935815675 seed_offset=0 real_seed=935815675 basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=935815675 RG_type=mt19937 Opened semaphore Attached shared memory segment core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 985 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.971783 seconds.
9) Message boards : Number crunching : Graphics do not work with linux version of rosetta beta. (Message 109109) Posted 22 days ago by kotenok2000 Post: Graphics do not work with linux version of rosetta beta. When i start graphical app it immediately closes and outputs this in stderrgfx.txt: cat /var/lib/boinc/slots/6/stderrgfx.txt ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145 23:25:39 (68987): called boinc_finish(0) It should look for database at /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database , not /var/lib/boinc/projects/database
10) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109107) Posted 22 days ago by kotenok2000 Post: Graphics do not work with linux version of rosetta beta. When i start graphical app it immediately closes and outputs this in stderrgfx.txt: cat /var/lib/boinc/slots/6/stderrgfx.txt ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145 23:25:39 (68987): called boinc_finish(0) It should look for database at /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database , not /var/lib/boinc/projects/database
11) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109080) Posted 4 Apr 2024 by kotenok2000 Post: I don't want to recieve more posts about this unless it is a post from staff member that fixed it.
12) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109063) Posted 2 Apr 2024 by kotenok2000 Post: Maybe you can reduce number of cpus allocated from 100% to 75%?
13) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109059) Posted 2 Apr 2024 by kotenok2000 Post: Tasks finish in 3 hours for me. I have set "Target CPU run time" to "not selected"
14) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109057) Posted 2 Apr 2024 by kotenok2000 Post: When i run graphics app it closes immediately. I see this in stderrgfx.txt user@ubuntu:/var/lib/boinc/slots/19$ cat stderrgfx.txt ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145 13:38:44 (25733): called boinc_finish(0)
15) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109043) Posted 27 Mar 2024 by kotenok2000 Post: I see this in stderr.txt command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.04_windows_x86_64.exe @7ahall_e_hal_7aa_15545_d239_0001.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 Extracting in project directory: database_0f7f01a1b07.zip error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/rotamer/bbdep02.May.sortlib Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/rotamer/peptoid_rotlibs/001.rotlib Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/chemical/pdb_components/components.R.cif Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/chemical/pdb_components/components.6.cif Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/chemical/pdb_components/components.1.cif Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/chemical/pdb_components/components.D.cif Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/chemical/pdb_components/components.V.cif Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/chemical/pdb_components/components.4.cif Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/sampling/disulfide_jump_database_wip.dat Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/sampling/fragpicker_rama_tables/L_QP.counts.gz Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/sampling/vall.jul19.2011.torsions.gz Permission denied error: cannot delete old E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/protocol_data/tensorflow_graphs/gcn_test_model/gcn_test_model_plot.png Permission denied Extracting in slot directory: minirosetta_database.zip Using database: database looks like each task tried to extract database to E:/ProgramData/BOINC/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07 all at once, gave up, and extracted to slot directory.
16) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109013) Posted 17 Mar 2024 by kotenok2000 Post: Reduce folding@home to 4 cores(if running on CPU) and Rosetta to 4 cores
17) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 109011) Posted 17 Mar 2024 by kotenok2000 Post: What else do you have running?
18) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 108986) Posted 14 Mar 2024 by kotenok2000 Post: Someone serverside made incorrect workunits in which residue 1 does not have a LOWER_CONNECT.
19) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 108945) Posted 8 Mar 2024 by kotenok2000 Post: What about cpu test? https://www.mersenne.org/download/#:~:text=CPU%20Stress%20/%20Torture%20Testing
20) Message boards : Number crunching : Why no work on my computer since Feb 17, 2024 (Message 108917) Posted 6 Mar 2024 by kotenok2000 Post: Log is at tools> Event log in boinc manager.

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