Posts by AMD_is_logical

1) Message boards : Number crunching : minirosetta 2.05 (Message 65263)
Posted 10 Feb 2010 by AMD_is_logical
Post:
Some lr15clusfa_opt WUs are failing after a few seconds:

http://boinc.bakerlab.org/rosetta/result.php?resultid=316845967
http://boinc.bakerlab.org/rosetta/result.php?resultid=316788455
http://boinc.bakerlab.org/rosetta/result.php?resultid=316769175
http://boinc.bakerlab.org/rosetta/result.php?resultid=316754661
http://boinc.bakerlab.org/rosetta/result.php?resultid=316741225
2) Message boards : Number crunching : minirosetta 2.05 (Message 65169)
Posted 1 Feb 2010 by AMD_is_logical
Post:
A couple of t287__boinc_filtered_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_16901 WUs on two different Linux machines failed after a few seconds claiming \"process got signal 11\".

http://boinc.bakerlab.org/rosetta/result.php?resultid=314826769
http://boinc.bakerlab.org/rosetta/result.php?resultid=314751622
3) Message boards : Number crunching : minirosetta 2.05 (Message 65118)
Posted 26 Jan 2010 by AMD_is_logical
Post:
Each of these cl1 WUs gave an error for both crunchers:

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=285818853
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=285786792
4) Message boards : Number crunching : minirosetta 2.05 (Message 65053)
Posted 21 Jan 2010 by AMD_is_logical
Post:
Here\'s a couple of relaxopt_grow WUS that exited after a few seconds with the error:

ERROR: LoopRebuild::ERROR Loop definition out of boundary
ERROR:: Exit from: src/protocols/loops/Loops.cc line: 595
BOINC:: Error reading and gzipping output datafile: default.out

http://boinc.bakerlab.org/rosetta/result.php?resultid=312109858
http://boinc.bakerlab.org/rosetta/result.php?resultid=312068049
5) Message boards : Number crunching : Not getting any new tasks (Message 64781)
Posted 4 Jan 2010 by AMD_is_logical
Post:
Oops, looks like Rosetta is still having problems. The Server Status page says that there are now only 760 WUs ready to send, and I\'m getting \"No work from project\" messages again.
6) Message boards : Number crunching : Not getting any new tasks (Message 64760)
Posted 4 Jan 2010 by AMD_is_logical
Post:
I\'m now getting plenty of new WUs.
7) Message boards : Number crunching : No new work (Message 64697)
Posted 1 Jan 2010 by AMD_is_logical
Post:
So I\'d guess that the server just can\'t keep up with the demand for new workunits at present.

There is no NEW work being generated at all right now. My machines sometimes get a WU, but it is always an old one that was resent after someone else didn\'t return it.

I notice on the Server Status page that one of the programs not working is \"db_purge\". I would guess that there is a safety that stops WUs from being generated if there are already too many in the database. Maybe that\'s the problem.

8) Message boards : Number crunching : SERVER PROBLEMS - 2. (Message 64607)
Posted 28 Dec 2009 by AMD_is_logical
Post:
I\'m getting \"No work from project\" when my machines try to get work.
9) Message boards : Number crunching : minirosetta 2.03 (Message 64531)
Posted 16 Dec 2009 by AMD_is_logical
Post:
This broker_idealclose_kic_in20_hb_t308__IGNORE_THE_REST_16512_810 WU gave an error for both crunchers.
10) Message boards : Number crunching : minirosetta 2.02 (Message 64454)
Posted 13 Dec 2009 by AMD_is_logical
Post:
This broker_idealclose_kic_in20_hb_t308__IGNORE_THE_REST_16512_115 WU failed for both crunchers.
11) Message boards : Number crunching : SERVER PROBLEMS. (Message 64432)
Posted 11 Dec 2009 by AMD_is_logical
Post:
I see the Server Status page is all green again. Thanks.
12) Message boards : Number crunching : SERVER PROBLEMS. (Message 64431)
Posted 11 Dec 2009 by AMD_is_logical
Post:
On the Server Status page, all but the first two programs are currently listed as \"Not running\".
13) Message boards : Number crunching : SERVER PROBLEMS. (Message 64408)
Posted 8 Dec 2009 by AMD_is_logical
Post:
The home page currently says there are zero queued jobs.
14) Message boards : Number crunching : Minirosetta 2.00 (Message 64180)
Posted 24 Nov 2009 by AMD_is_logical
Post:
I\'m getting a whole slew of errors from lr8_combine_smooth_torsion_it00_rama WUs. They quickly error out saying:

ERROR: Value of inactive option accessed: -score:dun08_dir

Here are a few examples:
http://boinc.bakerlab.org/rosetta/result.php?resultid=298962894
http://boinc.bakerlab.org/rosetta/result.php?resultid=298962944
http://boinc.bakerlab.org/rosetta/result.php?resultid=298984258
http://boinc.bakerlab.org/rosetta/result.php?resultid=299000848
http://boinc.bakerlab.org/rosetta/result.php?resultid=299050519
15) Message boards : Number crunching : No Work (Message 64179)
Posted 24 Nov 2009 by AMD_is_logical
Post:
Note that a task will stop when it hits the 100 decoy limit. This happens a lot if you specify a long runtime on a fast machine.
16) Message boards : Number crunching : Minirosetta 2.00 (Message 64144)
Posted 23 Nov 2009 by AMD_is_logical
Post:
These mix_score12 WUs gave validate errors for both crunchers.

This one ended reporting one decoy:
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=272164905

This one reported 12 decoys for both crunchers:
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=272118041

Both WUs ended well before the specified runtime.
17) Message boards : Number crunching : Minirosetta 2.00 (Message 64035)
Posted 13 Nov 2009 by AMD_is_logical
Post:
Had some 3gbm WUs bomb out after 100 seconds or so. This was with 32bit Linux. In some cases the other cruncher returned a successful result (with Windows).

http://boinc.bakerlab.org/rosetta/result.php?resultid=295903692
http://boinc.bakerlab.org/rosetta/result.php?resultid=295911236
http://boinc.bakerlab.org/rosetta/result.php?resultid=295912057
http://boinc.bakerlab.org/rosetta/result.php?resultid=295912773
18) Message boards : Number crunching : Minirosetta 2.00 (Message 63996)
Posted 10 Nov 2009 by AMD_is_logical
Post:
other improvement would be to used shared option
with prelink utility. That is, static linking is far from being optimal.

Static linking is needed for portability. A non-static binary would probably not run properly on a lot of Linux machines.
19) Message boards : Number crunching : Minirosetta 2.00 (Message 63987)
Posted 9 Nov 2009 by AMD_is_logical
Post:
These mix_score12 WUs gave validate errors for both crunchers:

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=268883328
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=268921690
20) Message boards : Number crunching : Minirosetta 1.98 (Message 63731)
Posted 17 Oct 2009 by AMD_is_logical
Post:
I\'m getting some errors with symm_lr8_seq_score12_ss_1.7_rlbd WUs.

ERROR: !core::conformation::symmetry::is_symmetric( pose )
ERROR:: Exit from: src/core/optimization/AtomTreeMinimizer.cc line: 55
BOINC:: Error reading and gzipping output datafile: default.out

http://boinc.bakerlab.org/rosetta/result.php?resultid=288650449
http://boinc.bakerlab.org/rosetta/result.php?resultid=288656157
http://boinc.bakerlab.org/rosetta/result.php?resultid=288660509


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