Posts by mickey
|
1)
Message boards :
Number crunching :
minirosetta 2.16
(Message 68073)
Posted 13 Oct 2010 by mickey Post: Ok guys, calm down. :) I have just checked again the graphics of the workunit that I am crunching on, and it works again. So I think that what I've posted before is only a visualization issue and not an application one. |
|
2)
Message boards :
Number crunching :
minirosetta 2.16
(Message 68067)
Posted 13 Oct 2010 by mickey Post: I have found one little issue in x86_64 linux app. When the workunits are started for the first time (i.e. started from 0.000% of progress) they works normally and the graphics are displayed correctly, but sometimes i find the graphics switching countinuosly from Stage: to App suspended without printing which stage is running. The value % complete is still increasing, like the step counter and the cpu time, but the top graphs: "Searching..." "Accepted", "Low Energy" and "Accepted Energy" are empty. I think that this trouble is raised when the app is stopped (for system reboot or any other motivation), and for making the app running again correctly I have to reset the project, because also new workunits will go in this state. Following the stderr of one corrupted execution at 17% done: [2010-10-13 2: 3:34:] :: BOINC:: Initializing ... ok. [2010-10-13 2: 3:34:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev38513.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_widd_run03_centroid_A_2a9h_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 21600 [2010-10-13 9:55: 8:] :: BOINC:: Initializing ... ok. [2010-10-13 9:55: 8:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev38513.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_widd_run03_centroid_A_2a9h_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_1 ... success! # cpu_run_time_pref: 21600 Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_3 ... success! I don't know if is only a graphics issue or a real app trouble, but I think that it's a strange behaviour. edit: my system config is Fedora core 13 x86_64 boinc installed from Fedora repositories version 6.10.45 other computer infos here |
©2024 University of Washington
https://www.bakerlab.org