Posts by Dadx

1) Message boards : Number crunching : Rosetta 4.0+ (Message 88352) Posted 23 Feb 2018 by Dadx Post: WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 Running on a Kindle HD 8, many tasks have dozens and sometimes hundreds of these messages. The more of these I see in a stderr file the longer it takes to complete, though the elapse time is much longer then the displayed and/or reported run time. I've taken to rebooting the device to see if that gooses them into continuing (works sometimes). If after 12-24 of no progress I abort them so they quickly get a chance to be run by someone else. What do the messages mean, why would they be happening and how I reduce the likelihood of them occurring ? Below is an example of the task that reported as successfully completed with what I small to moderate number of the warnings. Regards, DadX <core_client_version>7.4.53</core_client_version> <![CDATA[ <stderr_txt> WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu -use_filters true -silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -in:file:native ab_12_01__vall_2011__1aiuA.pdb -in::file::fasta ab_12_01__vall_2011__1aiuA.fasta -psipred_ss2 ab_12_01__vall_2011__1aiuA.psipred_ss2 -kill_hairpins ab_12_01__vall_2011__1aiuA.nobuformat.psipred_ss2 -frag3 ab_12_01__vall_2011__1aiuA.200.3mers.index -fragA ab_12_01__vall_2011__1aiuA.200.9mers.index -fragB ab_12_01__vall_2011__1aiuA.200.3mers.index -nstruct 10000 -cpu_run_time 14400 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1841840 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 Too many restarts with no progress. Keep application in memory while preempted. ====================================================== DONE :: 1 starting structures 1488.94 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 called boinc_finish(0) </stderr_txt> ]]>
2) Message boards : Number crunching : Rosetta and Android (Message 88289) Posted 14 Feb 2018 by Dadx Post: WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2810 WARNING: linker: ../../projects/boinc.bakerlab.org_rosetta/rosetta_android_4.06_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2 Running on a Kindle HD 8, many tasks have dozens and sometimes hundreds of these messages ususally concluded with: Too many restarts with no progress. Keep application in memory while preempted. The more of these I see in a task the longer it takes to complete, though they usually do complete. Task 972283888 would be an example. What do the messages mean and why would they be happening? Thanks DadX